Wall clock time and date at job start Mon Mar 30 2020 01:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47317 * 2 1 4 4 O 1.21272 * 119.99836 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99593 * 179.97438 * 3 2 1 6 6 C 1.47018 * 125.65214 * 359.97438 * 5 3 2 7 7 C 1.54325 * 107.40412 * 181.01647 * 6 5 3 8 8 C 1.55552 * 102.75696 * 22.23822 * 7 6 5 9 9 H 1.09000 * 111.02984 * 82.56372 * 8 7 6 10 10 C 1.50704 * 110.99971 * 206.38998 * 8 7 6 11 11 O 1.20817 * 120.00086 * 112.21181 * 10 8 7 12 12 O 1.34234 * 119.99527 * 292.21335 * 10 8 7 13 13 C 1.45202 * 116.99849 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.46912 * 179.97438 * 13 12 10 15 15 C 1.50711 * 109.46962 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99882 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99975 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46901 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47591 * 119.99907 * 19 17 15 22 22 H 1.48504 * 109.46994 * 240.00237 * 19 17 15 23 23 C 1.47430 * 125.64252 * 180.02562 * 5 3 2 24 24 H 1.09002 * 109.47102 * 59.99927 * 1 2 3 25 25 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 300.00371 * 1 2 3 27 27 H 1.09002 * 109.47060 * 239.99629 * 2 1 3 28 28 H 1.09002 * 109.47102 * 120.00073 * 2 1 3 29 29 H 1.09002 * 109.88241 * 300.51175 * 6 5 3 30 30 H 1.09000 * 109.88049 * 61.52304 * 6 5 3 31 31 H 1.08993 * 110.72531 * 140.63023 * 7 6 5 32 32 H 1.09000 * 110.72094 * 263.91129 * 7 6 5 33 33 H 1.08994 * 109.47231 * 300.00240 * 13 12 10 34 34 H 1.09001 * 109.46740 * 60.00037 * 13 12 10 35 35 H 1.09000 * 109.47495 * 299.99785 * 14 13 12 36 36 H 1.09001 * 109.47264 * 60.00509 * 14 13 12 37 37 H 0.96997 * 119.99785 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.36526 * 274.67677 * 23 5 3 39 39 H 1.08992 * 110.36633 * 36.89142 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4182 0.6489 0.0017 7 6 5.7707 1.3915 0.0280 8 6 5.3885 2.7807 0.6144 9 1 5.3386 2.7456 1.7026 10 6 6.3519 3.8445 0.1548 11 8 5.9783 4.7144 -0.5958 12 8 7.6252 3.8255 0.5794 13 6 8.4972 4.8809 0.0956 14 6 9.8975 4.6948 0.6832 15 6 10.8025 5.7906 0.1816 16 1 10.4172 6.5446 -0.4888 17 6 12.1222 5.8306 0.5786 18 7 12.5913 4.9127 1.3954 19 14 13.2437 7.1892 -0.0425 20 1 12.4788 8.0900 -0.9419 21 1 13.7653 7.9664 1.1103 22 1 14.3787 6.5910 -0.7904 23 6 3.9833 3.0018 0.0011 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.3248 0.0173 0.8851 30 1 4.3476 0.0391 -0.8990 31 1 6.4798 0.8785 0.6776 32 1 6.1737 1.4947 -0.9795 33 1 8.5506 4.8381 -0.9922 34 1 8.1007 5.8488 0.4022 35 1 9.8439 4.7379 1.7710 36 1 10.2944 3.7268 0.3770 37 1 13.5197 4.9411 1.6749 38 1 4.0693 3.3809 -1.0172 39 1 3.4043 3.6920 0.6145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179029795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:20 Heat of formation + Delta-G solvation = -160.321658 kcal Electronic energy + Delta-G solvation = -20094.371809 eV Core-core repulsion = 16807.571488 eV Total energy + Delta-G solvation = -3286.800322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86876 -40.85229 -38.62047 -37.59761 -35.46151 -33.95436 -32.95226 -32.14941 -30.28361 -27.50840 -26.34254 -24.19433 -23.50978 -22.82779 -21.33434 -20.22525 -19.11758 -18.38584 -18.33081 -17.72620 -17.38065 -16.72867 -16.51888 -16.33882 -15.62566 -15.14797 -14.69926 -14.52650 -14.38301 -14.34806 -13.91382 -13.56422 -13.20377 -13.13125 -13.05768 -12.88460 -12.64401 -12.61970 -12.59062 -12.40119 -12.07825 -11.92001 -11.80029 -11.51766 -11.49925 -11.30753 -10.97594 -10.62186 -9.76407 -8.28054 -6.40704 1.07780 1.39409 1.40938 1.46357 1.55433 1.60150 2.07525 2.39869 3.06606 3.12517 3.36775 3.70431 3.74864 4.01828 4.10563 4.20043 4.20949 4.22563 4.25844 4.29344 4.53209 4.68293 4.69437 4.74343 4.79777 4.92198 5.01045 5.04216 5.10469 5.16675 5.25394 5.37621 5.46822 5.51851 5.73585 6.06078 6.43686 6.65336 6.73442 7.08888 7.29106 8.84582 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.062743 B = 0.002802 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.156191 B = 9990.767665 C =10290.260692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.517 3.483 4 O -0.593 6.593 5 N -0.621 5.621 6 C 0.101 3.899 7 C -0.115 4.115 8 C -0.091 4.091 9 H 0.144 0.856 10 C 0.467 3.533 11 O -0.543 6.543 12 O -0.356 6.356 13 C 0.090 3.910 14 C 0.032 3.968 15 C -0.550 4.550 16 H 0.063 0.937 17 C 0.007 3.993 18 N -0.925 5.925 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.274 1.274 23 C 0.123 3.877 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.268 0.732 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.032 -15.327 -1.359 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.309 3.691 4 O -0.474 6.474 5 N -0.356 5.356 6 C -0.020 4.020 7 C -0.153 4.153 8 C -0.110 4.110 9 H 0.161 0.839 10 C 0.311 3.689 11 O -0.433 6.433 12 O -0.272 6.272 13 C 0.016 3.984 14 C -0.006 4.006 15 C -0.588 4.588 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.564 5.564 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.001 4.001 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.450 -14.667 -1.498 23.617 hybrid contribution 0.848 1.336 -0.291 1.609 sum -17.603 -13.331 -1.789 22.153 Atomic orbital electron populations 1.21565 0.93574 1.02804 1.01729 1.21701 0.97904 0.90352 1.06907 1.21431 0.79754 0.93444 0.74490 1.90698 1.55618 1.48766 1.52307 1.48666 1.05946 1.07744 1.73195 1.22374 0.83817 0.90499 1.05308 1.22813 0.98303 0.91198 1.02965 1.22240 0.90712 0.93707 1.04376 0.83860 1.23902 0.82308 0.85371 0.77293 1.90646 1.78576 1.38604 1.35517 1.86508 1.21412 1.52044 1.67270 1.23181 0.89318 0.87473 0.98390 1.18978 0.88542 0.97091 0.95955 1.21401 0.95700 1.11972 1.29711 0.91924 1.25923 0.99674 0.98683 0.94902 1.70086 1.16121 1.35750 1.34457 0.85305 0.78276 0.78549 0.78351 1.18839 1.20097 1.19960 1.21835 0.90899 0.86240 1.01132 0.93840 0.89213 0.93627 0.86277 0.85904 0.87263 0.88201 0.85979 0.90420 0.92156 0.92484 0.97410 0.97084 0.92302 0.91805 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.10 16 2 C -0.13 -1.35 5.61 29.85 0.17 -1.18 16 3 C 0.52 10.80 7.85 87.66 0.69 11.49 16 4 O -0.59 -18.55 16.24 -3.00 -0.05 -18.60 16 5 N -0.62 -11.51 3.33 -811.83 -2.70 -14.21 16 6 C 0.10 1.00 6.47 86.73 0.56 1.56 16 7 C -0.12 -1.67 6.44 31.92 0.21 -1.46 16 8 C -0.09 -1.96 3.55 -10.01 -0.04 -1.99 16 9 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 10 C 0.47 15.19 7.28 71.24 0.52 15.71 16 11 O -0.54 -21.12 15.47 21.99 0.34 -20.78 16 12 O -0.36 -13.41 10.22 -51.45 -0.53 -13.94 16 13 C 0.09 3.93 5.40 71.98 0.39 4.32 16 14 C 0.03 1.65 5.35 29.85 0.16 1.81 16 15 C -0.55 -30.80 9.11 25.60 0.23 -30.57 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 19 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.12 2.95 6.03 86.85 0.52 3.47 16 24 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 34 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.06 1.80 7.40 -2.39 -0.02 1.79 16 39 H 0.07 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -74.99 332.43 4.93 -70.06 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.02 Total: 3.42 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.54 Total: 2.93 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -2.42 Total: -68.33 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.23 Total: -53.31 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.99 4.93 -70.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179029795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.265 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds