Wall clock time and date at job start Mon Mar 30 2020 01:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99491 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47011 * 90.00204 * 12 10 8 14 14 H 1.48498 * 109.47112 * 210.00472 * 12 10 8 15 15 H 1.48499 * 109.47134 * 330.00583 * 12 10 8 16 16 C 1.50697 * 109.46664 * 239.99625 * 2 1 3 17 17 C 1.38257 * 120.00048 * 264.72705 * 16 2 1 18 18 C 1.38217 * 120.06549 * 179.72809 * 17 16 2 19 19 C 1.38257 * 120.07448 * 0.54758 * 18 17 16 20 20 C 1.38365 * 119.99840 * 359.73327 * 19 18 17 21 21 F 1.35095 * 120.03771 * 179.97438 * 20 19 18 22 22 C 1.38370 * 119.99993 * 85.00598 * 16 2 1 23 23 F 1.35099 * 120.03558 * 359.97438 * 22 16 2 24 24 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 25 25 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 27 27 H 1.00897 * 110.99542 * 151.04632 * 4 2 1 28 28 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 29 29 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 31 31 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 32 32 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 33 33 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 34 34 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 35 35 H 1.07992 * 119.96729 * 359.97438 * 17 16 2 36 36 H 1.08009 * 119.96109 * 180.27909 * 18 17 16 37 37 H 1.08003 * 120.00061 * 179.70525 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5329 3.5742 7 6 2.6610 0.4200 4.7694 8 6 3.1664 -0.3243 5.9784 9 1 3.4167 -1.3721 5.9019 10 6 3.3102 0.3327 7.1821 11 7 3.0058 1.6088 7.2752 12 14 3.9373 -0.5896 8.6806 13 1 5.4182 -0.4955 8.7358 14 1 3.3570 0.0094 9.9092 15 1 3.5351 -2.0161 8.5878 16 6 2.0322 -0.7105 -1.2304 17 6 2.3664 -2.0506 -1.1669 18 6 2.8218 -2.7050 -2.2960 19 6 2.9549 -2.0182 -3.4885 20 6 2.6269 -0.6755 -3.5539 21 9 2.7572 -0.0036 -4.7186 22 6 2.1645 -0.0203 -2.4224 23 9 1.8430 1.2905 -2.4840 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9172 -1.1205 1.0287 28 1 1.0871 0.6163 2.5526 29 1 2.7588 1.0462 2.1182 30 1 1.9200 -1.3567 3.8031 31 1 3.5915 -0.9263 3.3683 32 1 3.3369 1.2441 4.5409 33 1 1.6654 0.8132 4.9751 34 1 3.1066 2.0709 8.1220 35 1 2.2676 -2.5876 -0.2352 36 1 3.0781 -3.7530 -2.2455 37 1 3.3154 -2.5295 -4.3688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181979425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:15 Heat of formation + Delta-G solvation = -82.844710 kcal Electronic energy + Delta-G solvation = -19694.250471 eV Core-core repulsion = 16299.722287 eV Total energy + Delta-G solvation = -3394.528184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.68013 -48.75884 -39.62232 -36.86329 -34.07577 -32.33635 -30.65863 -30.28573 -29.06325 -26.10575 -24.16603 -23.18825 -22.31380 -20.71620 -20.14600 -18.15217 -17.44605 -17.13192 -16.54861 -16.28493 -15.78342 -15.20023 -15.04279 -14.88158 -14.55424 -14.39134 -14.14489 -13.67069 -13.11713 -12.85780 -12.36670 -12.30240 -12.22444 -12.06467 -11.91202 -11.61141 -11.32282 -10.98171 -10.79836 -10.57592 -10.50098 -9.71655 -9.37441 -9.18580 -9.04617 -9.00768 -8.35018 -8.32563 -5.99375 -4.01590 0.65549 0.68039 3.07846 3.32333 3.38554 3.42000 3.46815 4.05439 4.17638 4.24206 4.47024 4.56505 4.63555 4.86009 5.09704 5.26130 5.36475 5.44687 5.49694 5.65022 5.70023 5.76531 5.83151 5.88078 5.91443 6.01703 6.18951 6.31574 6.47243 6.68227 6.72739 7.11491 7.23041 7.49940 7.68387 7.82978 8.00855 8.43743 9.05647 9.62411 11.12077 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.036505 B = 0.003068 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.825945 B = 9125.697443 C = 9463.044223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.121 3.879 3 H 0.059 0.941 4 N -0.683 5.683 5 C 0.058 3.942 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.099 4.099 19 C -0.132 4.132 20 C 0.064 3.936 21 F -0.131 7.131 22 C 0.069 3.931 23 F -0.127 7.127 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.340 0.660 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -7.012 -22.124 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.076 0.924 4 N -0.315 5.315 5 C -0.071 4.071 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.091 4.091 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.044 3.956 21 F -0.110 7.110 22 C 0.049 3.951 23 F -0.105 7.105 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.661 -7.019 -21.869 23.121 hybrid contribution 1.135 0.585 0.340 1.322 sum -1.526 -6.435 -21.528 22.521 Atomic orbital electron populations 1.21755 0.92847 1.02761 1.01786 1.20391 0.96648 0.95579 0.86286 0.92367 1.60780 1.33255 1.33869 1.03583 1.22219 1.00826 0.93692 0.90332 1.21621 0.99284 0.99501 0.94009 1.19065 0.97160 0.94221 0.91145 1.21251 1.43543 0.96407 0.94554 0.92658 1.25038 0.95636 0.94891 0.98981 1.69967 1.48836 1.09025 1.25745 0.86593 0.78957 0.80029 0.82420 1.20712 1.21244 1.19839 1.20082 1.00048 0.95131 0.93809 1.21194 0.96724 0.92818 0.99932 1.21150 0.98371 1.00718 0.91479 1.21103 1.02004 0.91645 1.00339 1.17657 1.05226 0.91460 0.81243 1.91522 1.93815 1.80224 1.45411 1.17539 1.04367 0.79254 0.93958 1.91523 1.90386 1.31757 1.96833 0.92769 0.91612 0.91498 0.84160 0.91149 0.95514 0.92437 0.93629 0.96816 0.96543 0.93025 0.82896 0.84067 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.40 37.16 0.35 -1.21 16 2 C 0.12 1.50 2.60 -68.86 -0.18 1.32 16 3 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 4 N -0.68 -9.25 5.57 -107.95 -0.60 -9.85 16 5 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 6 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 7 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 12 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.09 -0.99 4.94 -104.57 -0.52 -1.51 16 17 C -0.09 -0.81 8.86 -39.58 -0.35 -1.16 16 18 C -0.10 -0.73 10.04 -39.58 -0.40 -1.13 16 19 C -0.13 -1.07 10.02 -39.53 -0.40 -1.46 16 20 C 0.06 0.69 7.31 -39.37 -0.29 0.40 16 21 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 22 C 0.07 0.82 7.25 -39.36 -0.29 0.54 16 23 F -0.13 -1.67 16.48 2.25 0.04 -1.64 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.82 7.45 -51.93 -0.39 0.43 16 27 H 0.34 4.25 7.25 -39.29 -0.28 3.97 16 28 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 29 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.15 1.31 6.95 -52.49 -0.37 0.95 16 36 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -30.43 319.84 -7.92 -38.35 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.15 Total: -1.85 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.78 Total: -18.66 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.14 Total: -36.18 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.43 -7.92 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181979425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.497 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds