Wall clock time and date at job start Mon Mar 30 2020 01:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99491 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47011 * 90.00204 * 12 10 8 14 14 H 1.48498 * 109.47112 * 210.00472 * 12 10 8 15 15 H 1.48499 * 109.47134 * 330.00583 * 12 10 8 16 16 C 1.50697 * 109.46664 * 239.99625 * 2 1 3 17 17 C 1.38257 * 120.00048 * 264.72705 * 16 2 1 18 18 C 1.38217 * 120.06549 * 179.72809 * 17 16 2 19 19 C 1.38257 * 120.07448 * 0.54758 * 18 17 16 20 20 C 1.38365 * 119.99840 * 359.73327 * 19 18 17 21 21 F 1.35095 * 120.03771 * 179.97438 * 20 19 18 22 22 C 1.38370 * 119.99993 * 85.00598 * 16 2 1 23 23 F 1.35099 * 120.03558 * 359.97438 * 22 16 2 24 24 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 25 25 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 27 27 H 1.00897 * 110.99542 * 151.04632 * 4 2 1 28 28 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 29 29 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 31 31 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 32 32 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 33 33 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 34 34 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 35 35 H 1.07992 * 119.96729 * 359.97438 * 17 16 2 36 36 H 1.08009 * 119.96109 * 180.27909 * 18 17 16 37 37 H 1.08003 * 120.00061 * 179.70525 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5329 3.5742 7 6 2.6610 0.4200 4.7694 8 6 3.1664 -0.3243 5.9784 9 1 3.4167 -1.3721 5.9019 10 6 3.3102 0.3327 7.1821 11 7 3.0058 1.6088 7.2752 12 14 3.9373 -0.5896 8.6806 13 1 5.4182 -0.4955 8.7358 14 1 3.3570 0.0094 9.9092 15 1 3.5351 -2.0161 8.5878 16 6 2.0322 -0.7105 -1.2304 17 6 2.3664 -2.0506 -1.1669 18 6 2.8218 -2.7050 -2.2960 19 6 2.9549 -2.0182 -3.4885 20 6 2.6269 -0.6755 -3.5539 21 9 2.7572 -0.0036 -4.7186 22 6 2.1645 -0.0203 -2.4224 23 9 1.8430 1.2905 -2.4840 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9172 -1.1205 1.0287 28 1 1.0871 0.6163 2.5526 29 1 2.7588 1.0462 2.1182 30 1 1.9200 -1.3567 3.8031 31 1 3.5915 -0.9263 3.3683 32 1 3.3369 1.2441 4.5409 33 1 1.6654 0.8132 4.9751 34 1 3.1066 2.0709 8.1220 35 1 2.2676 -2.5876 -0.2352 36 1 3.0781 -3.7530 -2.2455 37 1 3.3154 -2.5295 -4.3688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181979425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:14 Heat of formation + Delta-G solvation = -99.974642 kcal Electronic energy + Delta-G solvation = -19694.993281 eV Core-core repulsion = 16299.722287 eV Total energy + Delta-G solvation = -3395.270994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.55066 -49.63984 -40.43212 -37.99174 -35.82666 -34.02441 -31.77632 -31.25059 -30.13351 -27.84702 -25.26669 -24.29187 -23.54712 -21.97483 -21.56781 -19.01277 -18.53001 -18.20699 -17.93086 -17.41543 -16.95557 -16.53017 -16.09947 -15.93379 -15.74302 -15.47204 -15.33218 -14.95817 -14.40978 -13.89850 -13.75697 -13.63744 -13.47463 -13.05155 -12.99348 -12.86814 -12.73994 -12.48990 -12.44791 -12.16793 -11.88287 -11.49713 -11.36281 -11.09591 -10.54265 -9.94535 -9.77647 -9.51045 -8.19026 -6.30067 -0.09364 -0.04503 1.41474 1.42906 1.54216 2.37328 2.42083 2.66911 3.10054 3.14390 3.27546 3.44047 3.84582 3.89533 4.12323 4.20245 4.23648 4.27117 4.47492 4.64301 4.70733 4.79386 4.82333 4.90006 4.97991 5.00755 5.10529 5.21644 5.23644 5.29049 5.29986 5.53883 5.75791 5.76435 5.87279 5.96082 6.27109 6.39710 6.87534 7.39363 8.93006 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.036505 B = 0.003068 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.825945 B = 9125.697443 C = 9463.044223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.123 3.877 3 H 0.042 0.958 4 N -0.672 5.672 5 C 0.070 3.930 6 C -0.090 4.090 7 C 0.023 3.977 8 C -0.541 4.541 9 H 0.063 0.937 10 C -0.003 4.003 11 N -0.936 5.936 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.261 1.261 16 C -0.100 4.100 17 C -0.088 4.088 18 C -0.083 4.083 19 C -0.120 4.120 20 C 0.047 3.953 21 F -0.142 7.142 22 C 0.045 3.955 23 F -0.144 7.144 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.348 0.652 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.053 0.947 32 H -0.012 1.012 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -9.833 -22.711 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.013 3.987 3 H 0.060 0.940 4 N -0.305 5.305 5 C -0.059 4.059 6 C -0.128 4.128 7 C -0.014 4.014 8 C -0.579 4.579 9 H 0.081 0.919 10 C -0.201 4.201 11 N -0.576 5.576 12 Si 0.791 3.209 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.100 4.100 19 C -0.138 4.138 20 C 0.027 3.973 21 F -0.120 7.120 22 C 0.024 3.976 23 F -0.123 7.123 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.168 0.832 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.937 -9.855 -22.478 24.619 hybrid contribution 0.912 1.443 0.467 1.769 sum -1.025 -8.412 -22.011 23.586 Atomic orbital electron populations 1.21723 0.92418 1.03113 1.01568 1.20313 0.97004 0.94885 0.86485 0.94041 1.60688 1.33802 1.32817 1.03155 1.21909 1.00064 0.93506 0.90395 1.21353 1.00018 0.98293 0.93125 1.18983 0.94792 0.94477 0.93167 1.21718 1.43561 0.96981 0.95673 0.91925 1.26022 0.95736 0.95773 1.02554 1.70106 1.49939 1.10813 1.26751 0.85427 0.78530 0.79019 0.77964 1.19785 1.20905 1.18500 1.19950 1.01383 0.96007 0.92770 1.21382 0.96279 0.91865 1.01098 1.21559 0.96147 1.02188 0.90150 1.21494 1.00284 0.90320 1.01752 1.17957 1.06128 0.92557 0.80611 1.91492 1.93997 1.80688 1.45847 1.17808 1.05971 0.78841 0.94962 1.91470 1.90787 1.33025 1.96975 0.92243 0.90896 0.92480 0.83187 0.91745 0.96256 0.92261 0.92784 0.99366 0.99096 0.92835 0.82082 0.80312 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.40 71.98 0.68 -2.34 16 2 C 0.12 3.02 2.60 44.17 0.11 3.13 16 3 H 0.04 1.16 7.45 -2.39 -0.02 1.14 16 4 N -0.67 -17.59 5.57 -495.44 -2.76 -20.35 16 5 C 0.07 2.36 5.48 86.31 0.47 2.83 16 6 C -0.09 -3.61 5.41 30.60 0.17 -3.44 16 7 C 0.02 1.24 4.97 29.85 0.15 1.39 16 8 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 10 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 11 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 12 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 C -0.10 -2.11 4.94 -19.83 -0.10 -2.21 16 17 C -0.09 -1.37 8.86 22.27 0.20 -1.17 16 18 C -0.08 -0.88 10.04 22.27 0.22 -0.66 16 19 C -0.12 -1.55 10.02 22.30 0.22 -1.32 16 20 C 0.05 0.96 7.31 22.41 0.16 1.12 16 21 F -0.14 -3.23 17.18 44.97 0.77 -2.46 16 22 C 0.04 1.05 7.25 22.41 0.16 1.21 16 23 F -0.14 -3.96 16.48 44.97 0.74 -3.22 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.41 7.45 -2.38 -0.02 1.39 16 27 H 0.35 8.14 7.25 -89.70 -0.65 7.49 16 28 H 0.06 2.24 7.44 -2.39 -0.02 2.23 16 29 H 0.02 0.67 8.06 -2.39 -0.02 0.66 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.16 2.25 6.95 -2.91 -0.02 2.23 16 36 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -66.77 319.84 4.63 -62.14 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.42 Total: 6.66 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.15 Total: -31.81 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.47 Total: -77.56 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 1.51 Total: -5.68 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.77 4.63 -62.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181979425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.836 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds