Wall clock time and date at job start Mon Mar 30 2020 01:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46596 * 2 1 4 4 N 1.46893 * 109.47523 * 120.00240 * 2 1 3 5 5 C 1.46907 * 111.00063 * 275.00424 * 4 2 1 6 6 C 1.52999 * 109.47242 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.46988 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47157 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00288 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99675 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99988 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47566 * 89.99697 * 12 10 8 14 14 H 1.48502 * 109.46981 * 209.99698 * 12 10 8 15 15 H 1.48504 * 109.47304 * 329.99567 * 12 10 8 16 16 C 1.50698 * 109.47001 * 240.00531 * 2 1 3 17 17 C 1.38264 * 119.96322 * 279.72133 * 16 2 1 18 18 C 1.38210 * 120.07144 * 180.27972 * 17 16 2 19 19 C 1.38410 * 120.00055 * 359.97438 * 18 17 16 20 20 F 1.35102 * 120.03943 * 180.02562 * 19 18 17 21 21 C 1.38650 * 119.92901 * 359.97438 * 19 18 17 22 22 F 1.35105 * 120.03821 * 180.02562 * 21 19 18 23 23 C 1.38215 * 119.96850 * 99.99657 * 16 2 1 24 24 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47140 * 299.99336 * 1 2 3 26 26 H 1.08992 * 109.47197 * 60.00190 * 1 2 3 27 27 H 1.00905 * 111.00303 * 38.95149 * 4 2 1 28 28 H 1.09001 * 109.46608 * 299.99831 * 5 4 2 29 29 H 1.08996 * 109.46878 * 59.99447 * 5 4 2 30 30 H 1.08997 * 109.46972 * 300.00233 * 6 5 4 31 31 H 1.09004 * 109.46965 * 59.99708 * 6 5 4 32 32 H 1.08997 * 109.47889 * 300.00203 * 7 6 5 33 33 H 1.09004 * 109.47071 * 60.00306 * 7 6 5 34 34 H 0.97001 * 119.99257 * 179.97438 * 11 10 8 35 35 H 1.07995 * 119.96100 * 0.27813 * 17 16 2 36 36 H 1.07998 * 120.00309 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.99321 * 359.74111 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 0.2226 2.3469 6 6 2.5952 -0.5332 3.5744 7 6 2.6611 0.4199 4.7693 8 6 3.1655 -0.3246 5.9786 9 1 3.4146 -1.3728 5.9023 10 6 3.3090 0.3322 7.1824 11 7 3.0062 1.6087 7.2751 12 14 3.9349 -0.5905 8.6810 13 1 5.4158 -0.4973 8.7371 14 1 3.3544 0.0088 9.9095 15 1 3.5319 -2.0168 8.5882 16 6 2.0324 -0.7103 -1.2305 17 6 2.0718 -2.0920 -1.2625 18 6 2.5375 -2.7456 -2.3878 19 6 2.9645 -2.0170 -3.4844 20 9 3.4194 -2.6551 -4.5849 21 6 2.9239 -0.6314 -3.4527 22 9 3.3397 0.0820 -4.5220 23 6 2.4585 0.0202 -2.3238 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.4497 -1.4980 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0872 0.6162 2.5525 30 1 1.9186 -1.3567 3.8028 31 1 3.5906 -0.9272 3.3690 32 1 3.3380 1.2431 4.5407 33 1 1.6659 0.8142 4.9749 34 1 3.1069 2.0706 8.1221 35 1 1.7384 -2.6610 -0.4074 36 1 2.5675 -3.8249 -2.4117 37 1 2.4273 1.0994 -2.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182244639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:18 Heat of formation + Delta-G solvation = -86.144656 kcal Electronic energy + Delta-G solvation = -19406.845347 eV Core-core repulsion = 16012.174066 eV Total energy + Delta-G solvation = -3394.671281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.63151 -48.71007 -39.65867 -36.86108 -34.04057 -32.28180 -31.14664 -30.07797 -28.75298 -26.00032 -23.95705 -23.54044 -22.39334 -20.94983 -20.13214 -18.14637 -17.32429 -17.01952 -16.47830 -16.35829 -15.55486 -15.13068 -14.94693 -14.78260 -14.66566 -14.37539 -14.16953 -13.67220 -13.30904 -13.07240 -12.82026 -12.30966 -12.22950 -11.85526 -11.73493 -11.52967 -11.39884 -11.11873 -10.86349 -10.61785 -10.52069 -9.74076 -9.39023 -9.28747 -9.08855 -8.79457 -8.35877 -8.30346 -6.01009 -4.03123 0.71756 0.79035 3.14098 3.31611 3.37809 3.41047 3.57195 4.00322 4.23354 4.41391 4.45850 4.53490 4.81664 4.86864 4.96814 5.09479 5.34640 5.35077 5.52476 5.55616 5.59650 5.73266 5.77978 5.79874 5.85081 6.00253 6.16851 6.26613 6.53359 6.66929 6.70748 7.09734 7.21549 7.48676 7.66563 7.80990 7.99207 8.42272 9.04105 9.61059 11.10437 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002863 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.579343 B = 9779.268954 C =10028.552422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 H 0.091 0.909 4 N -0.683 5.683 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.041 4.041 17 C -0.078 4.078 18 C -0.125 4.125 19 C 0.057 3.943 20 F -0.133 7.133 21 C 0.066 3.934 22 F -0.132 7.132 23 C -0.124 4.124 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -5.326 -20.740 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.008 3.992 3 H 0.109 0.891 4 N -0.314 5.314 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.042 4.042 17 C -0.097 4.097 18 C -0.144 4.144 19 C 0.037 3.963 20 F -0.112 7.112 21 C 0.046 3.954 22 F -0.110 7.110 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.056 -5.087 -20.847 21.838 hybrid contribution -0.372 -0.278 0.666 0.812 sum -4.427 -5.366 -20.180 21.346 Atomic orbital electron populations 1.22497 0.95826 1.02630 1.02796 1.20473 0.92916 0.97691 0.88147 0.89067 1.60665 1.56626 1.10176 1.03891 1.22182 0.99339 0.95387 0.89973 1.21626 1.00147 0.98953 0.93799 1.19059 0.97031 0.94324 0.91128 1.21255 1.43588 0.96407 0.94523 0.92669 1.25031 0.95609 0.94894 0.98994 1.69967 1.48892 1.08998 1.25746 0.86595 0.79044 0.79990 0.82380 1.20645 1.21264 1.19875 1.19810 0.96434 0.93650 0.94330 1.20913 0.97740 0.93900 0.97134 1.21096 1.00264 1.01071 0.91962 1.17696 1.03954 0.88865 0.85787 1.91514 1.86815 1.81695 1.51154 1.17615 1.03700 0.87858 0.86212 1.91522 1.88038 1.77867 1.53615 1.20935 1.00502 1.01308 0.91550 0.92094 0.91570 0.91933 0.84227 0.91316 0.95393 0.93609 0.92502 0.96581 0.96811 0.93026 0.84138 0.83773 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.14 37.16 0.34 -1.24 16 2 C 0.12 1.21 2.79 -68.87 -0.19 1.02 16 3 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 4 N -0.68 -8.54 5.70 -107.95 -0.62 -9.16 16 5 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 6 C -0.11 -2.11 5.41 -26.74 -0.14 -2.25 16 7 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 8 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 9 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 12 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.04 -0.41 4.96 -104.62 -0.52 -0.93 16 17 C -0.08 -0.72 9.32 -39.58 -0.37 -1.09 16 18 C -0.13 -1.14 10.02 -39.53 -0.40 -1.54 16 19 C 0.06 0.63 7.31 -39.37 -0.29 0.34 16 20 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 21 C 0.07 0.74 7.31 -39.37 -0.29 0.45 16 22 F -0.13 -1.59 17.18 2.25 0.04 -1.56 16 23 C -0.12 -1.23 9.65 -39.53 -0.38 -1.61 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 25 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.34 3.83 7.81 -39.29 -0.31 3.53 16 28 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 29 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.14 1.11 7.24 -52.49 -0.38 0.74 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.19 8.04 -52.49 -0.42 0.76 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -30.20 321.78 -7.98 -38.18 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.20 Total: -2.28 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.81 Total: -18.94 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.12 Total: -35.24 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.20 -7.98 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182244639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.964 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds