Wall clock time and date at job start Mon Mar 30 2020 01:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46596 * 2 1 4 4 N 1.46893 * 109.47523 * 120.00240 * 2 1 3 5 5 C 1.46907 * 111.00063 * 275.00424 * 4 2 1 6 6 C 1.52999 * 109.47242 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.46988 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47157 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00288 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99675 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99988 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47566 * 89.99697 * 12 10 8 14 14 H 1.48502 * 109.46981 * 209.99698 * 12 10 8 15 15 H 1.48504 * 109.47304 * 329.99567 * 12 10 8 16 16 C 1.50698 * 109.47001 * 240.00531 * 2 1 3 17 17 C 1.38264 * 119.96322 * 279.72133 * 16 2 1 18 18 C 1.38210 * 120.07144 * 180.27972 * 17 16 2 19 19 C 1.38410 * 120.00055 * 359.97438 * 18 17 16 20 20 F 1.35102 * 120.03943 * 180.02562 * 19 18 17 21 21 C 1.38650 * 119.92901 * 359.97438 * 19 18 17 22 22 F 1.35105 * 120.03821 * 180.02562 * 21 19 18 23 23 C 1.38215 * 119.96850 * 99.99657 * 16 2 1 24 24 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47140 * 299.99336 * 1 2 3 26 26 H 1.08992 * 109.47197 * 60.00190 * 1 2 3 27 27 H 1.00905 * 111.00303 * 38.95149 * 4 2 1 28 28 H 1.09001 * 109.46608 * 299.99831 * 5 4 2 29 29 H 1.08996 * 109.46878 * 59.99447 * 5 4 2 30 30 H 1.08997 * 109.46972 * 300.00233 * 6 5 4 31 31 H 1.09004 * 109.46965 * 59.99708 * 6 5 4 32 32 H 1.08997 * 109.47889 * 300.00203 * 7 6 5 33 33 H 1.09004 * 109.47071 * 60.00306 * 7 6 5 34 34 H 0.97001 * 119.99257 * 179.97438 * 11 10 8 35 35 H 1.07995 * 119.96100 * 0.27813 * 17 16 2 36 36 H 1.07998 * 120.00309 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.99321 * 359.74111 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0825 0.2226 2.3469 6 6 2.5952 -0.5332 3.5744 7 6 2.6611 0.4199 4.7693 8 6 3.1655 -0.3246 5.9786 9 1 3.4146 -1.3728 5.9023 10 6 3.3090 0.3322 7.1824 11 7 3.0062 1.6087 7.2751 12 14 3.9349 -0.5905 8.6810 13 1 5.4158 -0.4973 8.7371 14 1 3.3544 0.0088 9.9095 15 1 3.5319 -2.0168 8.5882 16 6 2.0324 -0.7103 -1.2305 17 6 2.0718 -2.0920 -1.2625 18 6 2.5375 -2.7456 -2.3878 19 6 2.9645 -2.0170 -3.4844 20 9 3.4194 -2.6551 -4.5849 21 6 2.9239 -0.6314 -3.4527 22 9 3.3397 0.0820 -4.5220 23 6 2.4585 0.0202 -2.3238 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.4497 -1.4980 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0872 0.6162 2.5525 30 1 1.9186 -1.3567 3.8028 31 1 3.5906 -0.9272 3.3690 32 1 3.3380 1.2431 4.5407 33 1 1.6659 0.8142 4.9749 34 1 3.1069 2.0706 8.1221 35 1 1.7384 -2.6610 -0.4074 36 1 2.5675 -3.8249 -2.4117 37 1 2.4273 1.0994 -2.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182244639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:18 Heat of formation + Delta-G solvation = -102.823148 kcal Electronic energy + Delta-G solvation = -19407.568581 eV Core-core repulsion = 16012.174066 eV Total energy + Delta-G solvation = -3395.394515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.49590 -49.58196 -40.45696 -37.92414 -35.76642 -33.91882 -32.02794 -31.30767 -29.68762 -27.66266 -25.02617 -24.37105 -23.83644 -22.04261 -21.55146 -18.99168 -18.48469 -18.10087 -17.86085 -17.33538 -16.67752 -16.51546 -16.07090 -16.01524 -15.59335 -15.48912 -14.95477 -14.85814 -14.46926 -14.09683 -13.90873 -13.72850 -13.55705 -13.16163 -12.91562 -12.66345 -12.53411 -12.43539 -12.41803 -12.16872 -11.90253 -11.49338 -11.33886 -11.06832 -10.53107 -10.04915 -9.63009 -9.32233 -8.18483 -6.28934 -0.08367 0.04583 1.41786 1.42795 1.53826 2.37103 2.42752 2.78714 3.11779 3.15058 3.40742 3.61468 3.72058 4.08496 4.10595 4.18611 4.30250 4.36133 4.47748 4.63678 4.77630 4.81443 4.83194 4.89871 4.99245 5.05852 5.10739 5.16955 5.27013 5.30013 5.42278 5.56169 5.76930 5.80047 5.89704 6.07855 6.29796 6.52609 6.88872 7.40390 8.93335 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002863 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.579343 B = 9779.268954 C =10028.552422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.121 3.879 3 H 0.088 0.912 4 N -0.683 5.683 5 C 0.074 3.926 6 C -0.093 4.093 7 C 0.024 3.976 8 C -0.542 4.542 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.963 3.037 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.262 1.262 16 C -0.045 4.045 17 C -0.077 4.077 18 C -0.118 4.118 19 C 0.042 3.958 20 F -0.142 7.142 21 C 0.049 3.951 22 F -0.142 7.142 23 C -0.123 4.123 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.349 0.651 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.051 0.949 32 H -0.010 1.010 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -6.814 -20.692 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.011 3.989 3 H 0.107 0.893 4 N -0.314 5.314 5 C -0.055 4.055 6 C -0.131 4.131 7 C -0.013 4.013 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.788 3.212 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.186 1.186 16 C -0.046 4.046 17 C -0.095 4.095 18 C -0.137 4.137 19 C 0.022 3.978 20 F -0.121 7.121 21 C 0.029 3.971 22 F -0.121 7.121 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.169 0.831 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.386 -6.591 -20.820 22.274 hybrid contribution -0.283 0.196 0.625 0.713 sum -4.669 -6.395 -20.195 21.692 Atomic orbital electron populations 1.22443 0.94465 1.03405 1.02948 1.20457 0.93944 0.97364 0.87114 0.89339 1.60529 1.57611 1.09999 1.03299 1.21834 0.98984 0.95063 0.89600 1.21369 1.00334 0.98073 0.93316 1.18973 0.94819 0.94525 0.93008 1.21733 1.43582 0.96906 0.95775 0.92195 1.25978 0.95746 0.95770 1.02444 1.70096 1.49984 1.10680 1.26715 0.85471 0.78532 0.79029 0.78171 1.19938 1.20822 1.18614 1.19805 0.96698 0.94065 0.94007 1.21141 0.97057 0.93718 0.97569 1.21335 0.99082 1.02197 0.91055 1.17972 1.04660 0.89004 0.86170 1.91488 1.87057 1.81822 1.51740 1.17833 1.04695 0.88145 0.86453 1.91490 1.88312 1.78129 1.54173 1.21062 0.99930 1.02076 0.91106 0.91031 0.92414 0.90783 0.83132 0.92118 0.95156 0.92797 0.93038 0.99199 0.98953 0.92836 0.82503 0.81475 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.14 71.98 0.66 -2.01 16 2 C 0.12 2.24 2.79 44.17 0.12 2.36 16 3 H 0.09 1.71 7.66 -2.39 -0.02 1.69 16 4 N -0.68 -15.67 5.70 -495.44 -2.82 -18.49 16 5 C 0.07 2.25 5.48 86.30 0.47 2.72 16 6 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 7 C 0.02 1.26 4.97 29.85 0.15 1.40 16 8 C -0.54 -30.56 9.11 25.60 0.23 -30.32 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 11 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 12 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 C -0.04 -0.79 4.96 -19.86 -0.10 -0.89 16 17 C -0.08 -1.21 9.32 22.27 0.21 -1.00 16 18 C -0.12 -1.90 10.02 22.30 0.22 -1.68 16 19 C 0.04 0.87 7.31 22.41 0.16 1.04 16 20 F -0.14 -3.29 17.18 44.97 0.77 -2.52 16 21 C 0.05 1.05 7.31 22.41 0.16 1.21 16 22 F -0.14 -3.43 17.18 44.97 0.77 -2.66 16 23 C -0.12 -2.26 9.65 22.30 0.22 -2.05 16 24 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.06 1.00 7.45 -2.38 -0.02 0.98 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.35 6.93 7.81 -89.69 -0.70 6.23 16 28 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 29 H 0.03 0.91 7.44 -2.39 -0.02 0.89 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 35 H 0.16 1.96 7.24 -2.91 -0.02 1.93 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.16 2.38 8.04 -2.91 -0.02 2.35 16 Total: -1.00 -64.77 321.78 4.54 -60.23 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.37 Total: 6.09 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 3.14 Total: -32.29 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -2.54 Total: -74.81 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.55 Total: -5.17 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.77 4.54 -60.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182244639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.591 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds