Wall clock time and date at job start Mon Mar 30 2020 01:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46800 * 2 1 4 4 C 1.50707 * 109.46714 * 119.99109 * 2 1 3 5 5 H 1.07998 * 119.99641 * 120.00367 * 4 2 1 6 6 C 1.37877 * 120.00014 * 300.00327 * 4 2 1 7 7 N 1.31508 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99527 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46934 * 120.00021 * 8 6 4 11 11 H 1.48503 * 109.46840 * 239.99796 * 8 6 4 12 12 N 1.46897 * 109.47298 * 239.99242 * 2 1 3 13 13 C 1.46899 * 111.00181 * 306.04589 * 12 2 1 14 14 C 1.46901 * 110.99874 * 70.00294 * 12 2 1 15 15 C 1.50693 * 109.47201 * 169.99963 * 14 12 2 16 16 C 1.38233 * 120.00207 * 89.99355 * 15 14 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38235 * 120.00220 * 0.28719 * 17 16 15 19 19 C 1.50700 * 120.00273 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47133 * 209.99844 * 19 18 17 21 21 F 1.39900 * 109.46794 * 329.99355 * 19 18 17 22 22 C 1.38238 * 119.99712 * 359.97124 * 18 17 16 23 23 C 1.38233 * 120.00012 * 359.96176 * 22 18 17 24 24 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47405 * 300.00581 * 1 2 3 26 26 H 1.09002 * 109.46761 * 60.00748 * 1 2 3 27 27 H 0.97008 * 119.99562 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47138 * 183.95535 * 13 12 2 29 29 H 1.09001 * 109.47096 * 303.95801 * 13 12 2 30 30 H 1.09000 * 109.46753 * 63.95741 * 13 12 2 31 31 H 1.09000 * 109.47084 * 49.99967 * 14 12 2 32 32 H 1.09001 * 109.46701 * 289.99703 * 14 12 2 33 33 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.00009 * 180.25939 * 17 16 15 35 35 H 1.08995 * 109.47498 * 89.99601 * 19 18 17 36 36 H 1.08002 * 119.99672 * 179.97438 * 22 18 17 37 37 H 1.08004 * 119.99493 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3223 -1.1191 4.0082 9 1 3.1472 -2.2859 3.6042 10 1 3.1470 -0.1852 4.8162 11 1 1.1675 -1.5861 4.8167 12 7 2.0197 -0.6926 -1.1993 13 6 1.4344 -2.0356 -1.3076 14 6 1.7531 0.0970 -2.4090 15 6 2.4776 -0.5166 -3.5792 16 6 1.8542 -1.4798 -4.3502 17 6 2.5167 -2.0386 -5.4271 18 6 3.8048 -1.6384 -5.7296 19 6 4.5273 -2.2479 -6.9033 20 9 5.9028 -2.2606 -6.6486 21 9 4.0771 -3.5580 -7.0987 22 6 4.4302 -0.6790 -4.9554 23 6 3.7671 -0.1192 -3.8793 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.7093 1.1622 3.4843 28 1 1.8666 -2.5523 -2.1645 29 1 1.6467 -2.5988 -0.3987 30 1 0.3557 -1.9522 -1.4397 31 1 2.1027 1.1186 -2.2604 32 1 0.6815 0.1050 -2.6087 33 1 0.8477 -1.7924 -4.1141 34 1 2.0281 -2.7881 -6.0320 35 1 4.3289 -1.6582 -7.7982 36 1 5.4367 -0.3666 -5.1914 37 1 4.2557 0.6306 -3.2747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183959577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:24 Heat of formation + Delta-G solvation = -73.516756 kcal Electronic energy + Delta-G solvation = -20251.659790 eV Core-core repulsion = 16857.536096 eV Total energy + Delta-G solvation = -3394.123694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.11515 -47.13541 -39.45420 -37.04034 -33.30111 -31.89004 -30.93844 -28.79895 -27.47252 -25.40113 -25.24651 -23.14911 -22.60240 -20.82085 -19.24318 -17.65666 -17.54974 -17.26401 -16.27491 -15.40600 -15.08777 -15.00949 -14.42343 -14.31053 -13.94138 -13.67266 -13.40816 -13.32347 -13.11950 -13.03537 -12.56453 -12.28956 -11.86077 -11.51774 -11.21435 -11.07268 -11.01327 -10.85209 -10.76533 -10.61036 -10.44457 -10.06941 -9.85069 -8.95700 -8.87686 -8.68240 -8.40664 -7.20332 -6.02947 -4.06416 1.18431 1.43983 3.29327 3.37399 3.42413 3.57623 3.72917 4.07687 4.41257 4.47484 4.77125 4.96933 5.00657 5.04654 5.24402 5.30411 5.50794 5.56321 5.81792 5.85998 6.10284 6.12101 6.22731 6.33765 6.37581 6.40694 6.63148 6.75677 6.81568 6.85862 6.97813 7.07805 7.41318 7.67528 7.81876 8.08594 8.33929 8.55000 8.99927 9.58830 11.04186 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.003822 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.303646 B = 7324.295243 C = 7570.158370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.031 3.969 14 C 0.084 3.916 15 C -0.039 4.039 16 C -0.116 4.116 17 C -0.090 4.090 18 C -0.184 4.184 19 C 0.316 3.684 20 F -0.202 7.202 21 F -0.202 7.202 22 C -0.089 4.089 23 C -0.101 4.101 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.006 0.994 27 H 0.259 0.741 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.017 0.983 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -2.740 -17.672 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.044 4.044 15 C -0.039 4.039 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.185 4.185 19 C 0.262 3.738 20 F -0.183 7.183 21 F -0.184 7.184 22 C -0.107 4.107 23 C -0.120 4.120 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.505 -2.707 -17.462 18.014 hybrid contribution -0.586 -0.463 0.864 1.142 sum 2.919 -3.169 -16.597 17.147 Atomic orbital electron populations 1.22413 1.00776 0.99468 1.00508 1.19359 0.89824 0.94506 0.85910 0.94297 1.21137 1.30425 1.12483 0.89533 0.91886 1.24922 0.95233 0.95143 0.99006 1.69893 1.37186 1.23085 1.23313 0.86467 0.78543 0.79699 0.82872 1.19727 1.21045 1.21187 1.62397 1.58852 1.02397 1.01438 1.22304 0.96022 0.91903 1.01499 1.21111 0.96669 0.97580 0.89083 1.20204 0.94320 0.94541 0.94882 1.21076 1.00440 0.96911 0.95069 1.20805 0.93541 0.99017 0.97437 1.20278 0.96719 1.02008 0.99505 1.20289 0.75244 0.80179 0.98052 1.92987 1.32900 1.96603 1.95800 1.92983 1.88900 1.40214 1.96267 1.20873 0.99555 0.95544 0.94704 1.21072 0.94149 1.00413 0.96350 0.94950 0.89284 0.97489 0.93063 0.93610 0.90820 0.96475 0.90387 0.94494 0.85742 0.85620 0.86504 0.85494 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.22 37.16 0.31 -3.76 16 2 C 0.21 5.15 2.31 -68.86 -0.16 4.99 16 3 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.50 -13.44 7.91 -34.44 -0.27 -13.71 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 N -0.53 -11.04 4.69 -237.73 -1.12 -12.15 16 13 C 0.03 0.61 8.27 60.06 0.50 1.10 16 14 C 0.08 1.45 4.69 -4.98 -0.02 1.43 16 15 C -0.04 -0.59 4.88 -104.63 -0.51 -1.10 16 16 C -0.12 -1.57 7.97 -39.58 -0.32 -1.89 16 17 C -0.09 -1.09 9.40 -39.58 -0.37 -1.46 16 18 C -0.18 -2.19 5.73 -104.62 -0.60 -2.79 16 19 C 0.32 3.17 5.65 36.01 0.20 3.37 16 20 F -0.20 -2.35 16.48 2.25 0.04 -2.31 16 21 F -0.20 -2.33 16.48 2.25 0.04 -2.30 16 22 C -0.09 -1.10 9.40 -39.58 -0.37 -1.47 16 23 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 24 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 26 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 28 H 0.05 0.80 6.17 -51.93 -0.32 0.48 16 29 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 30 H 0.02 0.32 6.46 -51.93 -0.34 -0.02 16 31 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 32 H 0.04 0.63 7.00 -51.93 -0.36 0.27 16 33 H 0.12 1.57 8.03 -52.49 -0.42 1.15 16 34 H 0.13 1.30 7.60 -52.49 -0.40 0.90 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.13 1.35 7.60 -52.49 -0.40 0.95 16 37 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -28.72 305.74 -7.70 -36.42 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.77 Total: -0.33 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.10 Total: -15.62 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.49 Total: -36.68 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.07 Total: -4.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.72 -7.70 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183959577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.099 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds