Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46800 * 2 1 4 4 C 1.50707 * 109.46714 * 119.99109 * 2 1 3 5 5 H 1.07998 * 119.99641 * 120.00367 * 4 2 1 6 6 C 1.37877 * 120.00014 * 300.00327 * 4 2 1 7 7 N 1.31508 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99527 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46934 * 120.00021 * 8 6 4 11 11 H 1.48503 * 109.46840 * 239.99796 * 8 6 4 12 12 N 1.46897 * 109.47298 * 239.99242 * 2 1 3 13 13 C 1.46899 * 111.00181 * 306.04589 * 12 2 1 14 14 C 1.46901 * 110.99874 * 70.00294 * 12 2 1 15 15 C 1.50693 * 109.47201 * 169.99963 * 14 12 2 16 16 C 1.38233 * 120.00207 * 89.99355 * 15 14 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38235 * 120.00220 * 0.28719 * 17 16 15 19 19 C 1.50700 * 120.00273 * 179.97438 * 18 17 16 20 20 F 1.39898 * 109.47133 * 209.99844 * 19 18 17 21 21 F 1.39900 * 109.46794 * 329.99355 * 19 18 17 22 22 C 1.38238 * 119.99712 * 359.97124 * 18 17 16 23 23 C 1.38233 * 120.00012 * 359.96176 * 22 18 17 24 24 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47405 * 300.00581 * 1 2 3 26 26 H 1.09002 * 109.46761 * 60.00748 * 1 2 3 27 27 H 0.97008 * 119.99562 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47138 * 183.95535 * 13 12 2 29 29 H 1.09001 * 109.47096 * 303.95801 * 13 12 2 30 30 H 1.09000 * 109.46753 * 63.95741 * 13 12 2 31 31 H 1.09000 * 109.47084 * 49.99967 * 14 12 2 32 32 H 1.09001 * 109.46701 * 289.99703 * 14 12 2 33 33 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.00009 * 180.25939 * 17 16 15 35 35 H 1.08995 * 109.47498 * 89.99601 * 19 18 17 36 36 H 1.08002 * 119.99672 * 179.97438 * 22 18 17 37 37 H 1.08004 * 119.99493 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2307 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3223 -1.1191 4.0082 9 1 3.1472 -2.2859 3.6042 10 1 3.1470 -0.1852 4.8162 11 1 1.1675 -1.5861 4.8167 12 7 2.0197 -0.6926 -1.1993 13 6 1.4344 -2.0356 -1.3076 14 6 1.7531 0.0970 -2.4090 15 6 2.4776 -0.5166 -3.5792 16 6 1.8542 -1.4798 -4.3502 17 6 2.5167 -2.0386 -5.4271 18 6 3.8048 -1.6384 -5.7296 19 6 4.5273 -2.2479 -6.9033 20 9 5.9028 -2.2606 -6.6486 21 9 4.0771 -3.5580 -7.0987 22 6 4.4302 -0.6790 -4.9554 23 6 3.7671 -0.1192 -3.8793 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 0.7093 1.1622 3.4843 28 1 1.8666 -2.5523 -2.1645 29 1 1.6467 -2.5988 -0.3987 30 1 0.3557 -1.9522 -1.4397 31 1 2.1027 1.1186 -2.2604 32 1 0.6815 0.1050 -2.6087 33 1 0.8477 -1.7924 -4.1141 34 1 2.0281 -2.7881 -6.0320 35 1 4.3289 -1.6582 -7.7982 36 1 5.4367 -0.3666 -5.1914 37 1 4.2557 0.6306 -3.2747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183959577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = -89.187443 kcal Electronic energy + Delta-G solvation = -20252.339322 eV Core-core repulsion = 16857.536096 eV Total energy + Delta-G solvation = -3394.803226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.93642 -47.96749 -40.56887 -38.62904 -35.03439 -33.32868 -31.94290 -30.50047 -28.81757 -27.28377 -26.66438 -24.53859 -23.63515 -22.01374 -20.95029 -18.53440 -18.36202 -18.23572 -18.11090 -17.10725 -16.34145 -16.27441 -16.03257 -15.47862 -14.99350 -14.84736 -14.77320 -14.51452 -14.36749 -14.09878 -13.98170 -13.55067 -13.35539 -13.07674 -12.80518 -12.67404 -12.57708 -12.50267 -12.29009 -12.09537 -11.91701 -11.86546 -11.55481 -10.92900 -10.49568 -9.88239 -9.78042 -8.86043 -8.10897 -6.21303 0.15711 0.43659 1.40980 1.43488 1.54934 2.42407 2.60667 2.88626 3.18416 3.31184 3.55088 3.61960 3.91937 4.01903 4.03730 4.11669 4.42041 4.47382 4.55701 4.65774 4.69213 4.77544 4.82558 4.89090 4.93693 5.10169 5.13892 5.17388 5.35396 5.40853 5.51789 5.68158 5.72671 5.79073 5.95680 6.20450 6.47305 6.71115 6.91810 7.47960 8.95155 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.003822 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.303646 B = 7324.295243 C = 7570.158370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 H 0.009 0.991 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.539 5.539 13 C 0.040 3.960 14 C 0.089 3.911 15 C -0.058 4.058 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.182 4.182 19 C 0.315 3.685 20 F -0.211 7.211 21 F -0.211 7.211 22 C -0.090 4.090 23 C -0.113 4.113 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -3.779 -19.292 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.027 0.973 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.263 5.263 13 C -0.109 4.109 14 C -0.039 4.039 15 C -0.059 4.059 16 C -0.139 4.139 17 C -0.107 4.107 18 C -0.183 4.183 19 C 0.262 3.738 20 F -0.193 7.193 21 F -0.192 7.192 22 C -0.107 4.107 23 C -0.132 4.132 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.926 -3.752 -19.100 19.857 hybrid contribution -0.686 -0.134 1.275 1.454 sum 3.240 -3.886 -17.825 18.529 Atomic orbital electron populations 1.22204 1.00129 0.99330 1.00081 1.19104 0.90174 0.92942 0.87033 0.97339 1.21379 1.30427 1.12348 0.90931 0.92859 1.25645 0.95423 0.95808 1.01696 1.70009 1.37957 1.24127 1.23934 0.85520 0.78077 0.78629 0.79471 1.19480 1.20698 1.20623 1.62252 1.59184 1.03134 1.01688 1.22222 0.96414 0.90978 1.01258 1.21054 0.97237 0.97037 0.88537 1.20015 0.94941 0.96087 0.94850 1.21180 1.00870 0.96506 0.95334 1.21044 0.93671 0.98967 0.96977 1.20583 0.96733 1.01269 0.99733 1.20660 0.74295 0.80057 0.98766 1.92971 1.33741 1.96623 1.95946 1.92970 1.88944 1.41015 1.96258 1.21054 1.00225 0.95426 0.94044 1.21151 0.94038 1.00809 0.97166 0.94770 0.92011 0.95492 0.92976 0.91487 0.92971 0.95918 0.91095 0.94191 0.85007 0.83497 0.82064 0.83792 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.53 8.22 71.98 0.59 -6.94 16 2 C 0.21 10.75 2.31 44.17 0.10 10.85 16 3 H 0.01 0.48 7.93 -2.39 -0.02 0.46 16 4 C -0.51 -28.18 7.91 25.60 0.20 -27.97 16 5 H 0.05 2.97 7.12 -2.91 -0.02 2.95 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.29 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.54 -22.70 4.69 -906.03 -4.25 -26.96 16 13 C 0.04 1.51 8.27 127.69 1.06 2.57 16 14 C 0.09 3.09 4.69 85.55 0.40 3.49 16 15 C -0.06 -1.71 4.88 -19.87 -0.10 -1.80 16 16 C -0.12 -3.02 7.97 22.27 0.18 -2.85 16 17 C -0.09 -1.90 9.40 22.27 0.21 -1.69 16 18 C -0.18 -3.82 5.73 -19.87 -0.11 -3.93 16 19 C 0.32 5.23 5.65 71.24 0.40 5.63 16 20 F -0.21 -4.33 16.48 44.97 0.74 -3.59 16 21 F -0.21 -4.19 16.48 44.97 0.74 -3.45 16 22 C -0.09 -2.04 9.40 22.27 0.21 -1.83 16 23 C -0.11 -3.07 9.70 22.27 0.22 -2.85 16 24 H 0.03 1.56 6.42 -2.39 -0.02 1.55 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 26 H 0.03 1.13 6.91 -2.39 -0.02 1.11 16 27 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 28 H 0.07 2.26 6.17 -2.39 -0.01 2.24 16 29 H 0.05 2.20 6.76 -2.39 -0.02 2.19 16 30 H 0.02 0.83 6.46 -2.39 -0.02 0.81 16 31 H 0.07 2.50 7.88 -2.39 -0.02 2.49 16 32 H 0.04 1.35 7.00 -2.39 -0.02 1.33 16 33 H 0.13 3.05 8.03 -2.91 -0.02 3.03 16 34 H 0.15 2.51 7.60 -2.91 -0.02 2.49 16 35 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.14 2.72 7.60 -2.91 -0.02 2.70 16 37 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -61.50 305.74 4.38 -57.12 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.07 Total: 9.49 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.81 Total: -26.18 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -4.01 Total: -79.24 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 1.48 Total: -7.04 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.50 4.38 -57.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183959577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.065 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds