Wall clock time and date at job start Mon Mar 30 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47320 * 89.99850 * 9 7 5 11 11 H 1.48505 * 109.47486 * 209.99782 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99955 * 9 7 5 13 13 S 1.81003 * 109.47194 * 119.99905 * 2 1 3 14 14 C 1.76206 * 99.99950 * 295.00093 * 13 2 1 15 15 N 1.31287 * 126.48113 * 0.02562 * 14 13 2 16 16 N 1.28529 * 109.85457 * 179.97438 * 15 14 13 17 17 C 1.30295 * 110.07654 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.34028 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47391 * 254.97345 * 18 17 16 20 20 C 1.53002 * 109.46671 * 14.97457 * 18 17 16 21 21 C 1.53008 * 109.47017 * 134.97001 * 18 17 16 22 22 N 1.36536 * 126.48272 * 179.71228 * 14 13 2 23 23 H 0.96997 * 127.14740 * 359.97438 * 22 14 13 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 28 28 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 29 29 H 0.96998 * 120.00442 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.46646 * 59.99948 * 19 18 17 31 31 H 1.08998 * 109.46905 * 180.02562 * 19 18 17 32 32 H 1.08997 * 109.46535 * 299.99898 * 19 18 17 33 33 H 1.09003 * 109.47087 * 60.00087 * 20 18 17 34 34 H 1.09008 * 109.46598 * 179.97438 * 20 18 17 35 35 H 1.08998 * 109.47445 * 299.99353 * 20 18 17 36 36 H 1.08993 * 109.46865 * 60.00141 * 21 18 17 37 37 H 1.09000 * 109.46957 * 180.02562 * 21 18 17 38 38 H 1.08997 * 109.47261 * 300.00257 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 5.5412 -1.1011 -2.4128 9 14 3.3016 -2.1087 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7004 -3.1232 13 16 2.1333 -0.8532 1.4779 14 6 1.5439 0.2423 2.7258 15 7 0.8628 1.3484 2.5352 16 7 0.5967 1.8976 3.6664 17 6 1.0880 1.1816 4.6378 18 6 0.9903 1.4872 6.1103 19 6 2.3402 2.0005 6.6153 20 6 -0.0800 2.5562 6.3392 21 6 0.6114 0.2149 6.8711 22 7 1.7039 0.0984 4.0740 23 1 2.1610 -0.6216 4.5361 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6055 -0.2617 -2.1369 29 1 6.0257 -1.5085 -3.1478 30 1 2.6100 2.9068 6.0733 31 1 2.2696 2.2211 7.6804 32 1 3.1026 1.2389 6.4521 33 1 -1.0417 2.1904 5.9795 34 1 -0.1510 2.7769 7.4044 35 1 0.1899 3.4626 5.7973 36 1 1.3738 -0.5467 6.7079 37 1 0.5403 0.4361 7.9361 38 1 -0.3503 -0.1508 6.5113 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188288948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:17 Heat of formation + Delta-G solvation = 47.278885 kcal Electronic energy + Delta-G solvation = -18317.675173 eV Core-core repulsion = 15514.922709 eV Total energy + Delta-G solvation = -2802.752464 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.71687 -37.13323 -34.76662 -33.39493 -32.15500 -29.96407 -27.96317 -27.64203 -27.48300 -23.55131 -23.10563 -22.22346 -20.57290 -20.02748 -18.02293 -16.78535 -16.18853 -15.84869 -15.42243 -14.90549 -14.35997 -14.23458 -14.14895 -13.04444 -12.68053 -12.62447 -12.48612 -12.34328 -12.01189 -11.95861 -11.83590 -11.58695 -11.34621 -11.25113 -11.17544 -11.05646 -10.67425 -10.64702 -10.34863 -9.98601 -9.71427 -9.60457 -9.50288 -9.26378 -8.59217 -7.11108 -6.08615 -4.08110 1.56152 1.84375 2.74535 2.99209 3.11916 3.27752 3.35641 3.37667 4.16600 4.40238 4.44573 4.61767 4.88380 5.21664 5.25126 5.26855 5.39985 5.42157 5.48407 5.60069 5.61259 5.65839 5.72382 5.74923 5.76432 5.97117 6.02871 6.05499 6.18807 6.43328 6.44410 6.70069 6.98180 7.08442 7.14185 7.65094 8.45440 8.85447 8.97487 9.51769 11.03987 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.039683 B = 0.004119 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.414739 B = 6795.910674 C = 7078.330862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 H 0.097 0.903 4 C 0.000 4.000 5 C -0.525 4.525 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.265 1.265 13 S 0.019 5.981 14 C 0.169 3.831 15 N -0.297 5.297 16 N -0.283 5.283 17 C 0.180 3.820 18 C 0.023 3.977 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.146 4.146 22 N -0.575 5.575 23 H 0.426 0.574 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 1.595 18.246 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 H 0.116 0.884 4 C -0.039 4.039 5 C -0.564 4.564 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.189 1.189 13 S 0.249 5.751 14 C -0.207 4.207 15 N -0.142 5.142 16 N -0.122 5.122 17 C -0.092 4.092 18 C 0.020 3.980 19 C -0.200 4.200 20 C -0.188 4.188 21 C -0.204 4.204 22 N -0.191 5.191 23 H 0.266 0.734 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.601 1.780 17.401 19.953 hybrid contribution 0.021 -0.810 -0.099 0.816 sum -9.580 0.970 17.301 19.800 Atomic orbital electron populations 1.22171 0.94016 1.01898 1.02884 1.23390 0.97382 1.02860 0.93966 0.88445 1.19573 0.98037 0.95630 0.90676 1.21149 0.89165 1.35805 1.10236 0.90044 1.24976 0.94703 0.95661 0.97666 1.69902 1.06531 1.44894 1.32185 0.86869 0.80350 0.80114 0.82579 1.20125 1.21253 1.18913 1.86115 1.68006 1.26585 0.94392 1.27609 1.03465 1.01903 0.87683 1.74696 1.16226 1.05570 1.17671 1.73869 1.19844 1.24111 0.94425 1.24826 0.99299 0.87325 0.97701 1.19016 0.97816 0.97115 0.84046 1.21930 0.94790 1.01810 1.01513 1.21718 0.97540 0.98147 1.01395 1.21961 1.01890 0.95909 1.00627 1.44146 1.46053 1.22772 1.06137 0.73383 0.92656 0.91885 0.91320 0.95609 0.94612 0.92628 0.91696 0.91207 0.92573 0.92008 0.91904 0.91201 0.92709 0.90982 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.01 37.16 0.33 -2.29 16 2 C -0.05 -0.94 2.29 -26.74 -0.06 -1.01 16 3 H 0.10 2.11 8.14 -51.92 -0.42 1.69 16 4 C 0.00 0.00 3.51 -27.89 -0.10 -0.10 16 5 C -0.53 -14.44 9.09 -34.44 -0.31 -14.75 16 6 H 0.08 2.43 7.84 -52.49 -0.41 2.02 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 13 S 0.02 0.37 21.07 -107.50 -2.26 -1.90 16 14 C 0.17 2.95 8.06 -88.34 -0.71 2.24 16 15 N -0.30 -5.68 9.74 30.68 0.30 -5.38 16 16 N -0.28 -4.93 11.53 33.00 0.38 -4.55 16 17 C 0.18 2.48 6.55 -153.99 -1.01 1.48 16 18 C 0.02 0.22 0.99 -155.65 -0.15 0.06 16 19 C -0.14 -1.18 8.46 37.16 0.31 -0.87 16 20 C -0.13 -1.18 8.05 37.16 0.30 -0.88 16 21 C -0.15 -1.07 8.36 37.16 0.31 -0.76 16 22 N -0.57 -7.95 6.16 -9.92 -0.06 -8.01 16 23 H 0.43 4.50 8.63 -40.82 -0.35 4.15 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.22 5.91 -51.93 -0.31 0.92 16 27 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 28 H 0.04 0.81 7.57 -51.93 -0.39 0.42 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.05 0.36 7.79 -51.93 -0.40 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -31.93 323.28 -7.91 -39.84 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.06 Total: -0.02 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.19 Total: -14.93 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 1.39 Total: -44.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.26 Total: -1.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.93 -7.91 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188288948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.120 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds