Wall clock time and date at job start Mon Mar 30 2020 01:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46459 * 2 1 4 4 C 1.52994 * 109.47434 * 119.99893 * 2 1 3 5 5 C 1.50700 * 109.47384 * 185.00017 * 4 2 1 6 6 H 1.07998 * 119.99737 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00148 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00137 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47282 * 89.99907 * 9 7 5 11 11 H 1.48501 * 109.47100 * 210.00136 * 9 7 5 12 12 H 1.48508 * 109.47006 * 329.99967 * 9 7 5 13 13 S 1.81002 * 109.47238 * 240.00726 * 2 1 3 14 14 C 1.76199 * 100.00203 * 64.99470 * 13 2 1 15 15 N 1.31284 * 126.48371 * 0.14285 * 14 13 2 16 16 N 1.28530 * 109.85475 * 180.25978 * 15 14 13 17 17 C 1.30294 * 110.07622 * 359.76188 * 16 15 14 18 18 N 1.36536 * 126.48591 * 180.02562 * 14 13 2 19 19 C 1.46504 * 127.13744 * 0.02562 * 18 14 13 20 20 C 1.53006 * 109.46883 * 179.70882 * 19 18 14 21 21 C 1.52999 * 109.47050 * 59.71680 * 19 18 14 22 22 C 1.52997 * 109.47417 * 299.70968 * 19 18 14 23 23 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46942 * 299.99556 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99773 * 1 2 3 26 26 H 1.08997 * 109.47115 * 305.00924 * 4 2 1 27 27 H 1.09004 * 109.46779 * 65.00209 * 4 2 1 28 28 H 0.97000 * 120.00488 * 179.97438 * 8 7 5 29 29 H 1.08002 * 126.33478 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.46801 * 300.00349 * 20 19 18 31 31 H 1.09001 * 109.46998 * 59.99945 * 20 19 18 32 32 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.47160 * 179.97438 * 21 19 18 34 34 H 1.09002 * 109.46719 * 299.99449 * 21 19 18 35 35 H 1.08993 * 109.47839 * 59.99291 * 21 19 18 36 36 H 1.09001 * 109.47375 * 300.00052 * 22 19 18 37 37 H 1.09002 * 109.46777 * 60.00607 * 22 19 18 38 38 H 1.09000 * 109.47140 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1934 2.3577 8 7 5.5412 -1.1002 2.4133 9 14 3.3018 -2.1098 3.6946 10 1 3.1712 -3.5396 3.3155 11 1 4.0451 -2.0032 4.9757 12 1 1.9506 -1.5149 3.8553 13 16 2.1334 -0.8531 -1.4780 14 6 1.5439 0.2425 -2.7257 15 7 0.8654 1.3501 -2.5350 16 7 0.5941 1.8961 -3.6665 17 6 1.0832 1.1788 -4.6380 18 7 1.7082 0.1013 -4.0738 19 6 2.4041 -0.9830 -4.7712 20 6 2.3389 -0.7428 -6.2809 21 6 1.7334 -2.3171 -4.4378 22 6 3.8667 -1.0213 -4.3236 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7517 -1.7715 1.2055 28 1 6.0256 -1.5069 3.1487 29 1 1.0082 1.3949 -5.6935 30 1 1.2969 -0.7154 -6.5997 31 1 2.8166 0.2077 -6.5186 32 1 2.8563 -1.5497 -6.7999 33 1 2.2509 -3.1237 -4.9570 34 1 1.7799 -2.4882 -3.3623 35 1 0.6915 -2.2898 -4.7566 36 1 4.3445 -0.0709 -4.5613 37 1 3.9131 -1.1925 -3.2482 38 1 4.3845 -1.8277 -4.8429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188309913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:19 Heat of formation + Delta-G solvation = 62.547649 kcal Electronic energy + Delta-G solvation = -18951.236119 eV Core-core repulsion = 16149.145758 eV Total energy + Delta-G solvation = -2802.090361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.66365 -37.59090 -34.69999 -32.15993 -31.74009 -30.54965 -28.05256 -27.68252 -27.55597 -23.58465 -23.09538 -21.76692 -21.00078 -19.81088 -17.47958 -16.76957 -16.04759 -15.87904 -15.08023 -14.78106 -14.30826 -14.25544 -13.99694 -13.30186 -12.91780 -12.66613 -12.61700 -12.51697 -12.24171 -12.01608 -11.76395 -11.65635 -11.58799 -11.31459 -11.05789 -10.96305 -10.65421 -10.27633 -10.04076 -9.98961 -9.72150 -9.60593 -9.41789 -9.24136 -8.58384 -7.06728 -6.07998 -4.07161 1.63557 1.93206 2.70676 2.83667 3.10058 3.27562 3.35903 3.38301 4.22986 4.40783 4.47748 4.57561 4.65726 5.15187 5.25404 5.25837 5.35427 5.42286 5.47741 5.54989 5.59288 5.61814 5.64358 5.77217 5.83997 6.02699 6.06637 6.13620 6.28641 6.46564 6.46994 6.72999 6.95677 7.02621 7.14877 7.66443 8.46558 8.91608 8.98187 9.52657 11.04583 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.005702 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.044152 B = 4909.566058 C = 5443.368564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 H 0.096 0.904 4 C 0.001 3.999 5 C -0.523 4.523 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.264 1.264 13 S 0.024 5.976 14 C 0.168 3.832 15 N -0.301 5.301 16 N -0.295 5.295 17 C 0.140 3.860 18 N -0.460 5.460 19 C 0.158 3.842 20 C -0.155 4.155 21 C -0.166 4.166 22 C -0.168 4.168 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.212 0.788 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -2.821 -16.612 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 H 0.114 0.886 4 C -0.038 4.038 5 C -0.562 4.562 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.189 1.189 13 S 0.254 5.746 14 C -0.206 4.206 15 N -0.145 5.145 16 N -0.134 5.134 17 C -0.150 4.150 18 N -0.156 5.156 19 C 0.073 3.927 20 C -0.213 4.213 21 C -0.224 4.224 22 C -0.227 4.227 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.900 -2.754 -15.891 17.542 hybrid contribution -0.310 -0.298 0.062 0.434 sum -7.210 -3.051 -15.829 17.659 Atomic orbital electron populations 1.22155 0.94134 1.01773 1.02806 1.23452 0.97386 1.03012 0.94553 0.88581 1.19564 0.98047 0.95278 0.90950 1.21143 0.89159 1.35710 1.10163 0.90072 1.24971 0.94688 0.95724 0.97613 1.69901 1.06500 1.44954 1.32191 0.86876 0.80610 0.80645 0.81827 1.20200 1.21259 1.18910 1.85891 1.68048 1.26739 0.93910 1.27527 1.03481 1.01654 0.87961 1.74671 1.16552 1.05573 1.17702 1.73887 1.19986 1.24439 0.95073 1.26403 0.99787 0.87420 1.01421 1.46932 1.42568 1.20742 1.05356 1.20950 0.93251 0.85804 0.92652 1.22147 1.03232 1.03604 0.92283 1.22294 1.00859 0.94678 1.04574 1.22316 0.92504 1.03211 1.04623 0.92760 0.92024 0.91353 0.94319 0.96140 0.92659 0.77147 0.91429 0.91317 0.89864 0.90143 0.89981 0.91877 0.91728 0.89556 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.01 37.16 0.33 -2.32 16 2 C -0.05 -1.13 2.29 -26.73 -0.06 -1.19 16 3 H 0.10 2.12 8.14 -51.91 -0.42 1.70 16 4 C 0.00 0.01 3.51 -27.89 -0.10 -0.08 16 5 C -0.52 -14.34 9.09 -34.44 -0.31 -14.65 16 6 H 0.08 2.41 7.84 -52.49 -0.41 2.00 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 13 S 0.02 0.45 16.87 -107.50 -1.81 -1.36 16 14 C 0.17 2.98 7.24 -88.34 -0.64 2.34 16 15 N -0.30 -5.88 9.75 30.68 0.30 -5.58 16 16 N -0.29 -5.27 12.18 29.90 0.36 -4.91 16 17 C 0.14 1.92 11.70 -88.96 -1.04 0.88 16 18 N -0.46 -6.53 2.66 -104.24 -0.28 -6.80 16 19 C 0.16 1.68 1.10 -131.82 -0.14 1.54 16 20 C -0.16 -1.10 7.41 37.16 0.28 -0.82 16 21 C -0.17 -1.68 8.51 37.16 0.32 -1.37 16 22 C -0.17 -1.92 8.52 37.16 0.32 -1.60 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.24 5.92 -51.93 -0.31 0.94 16 26 H 0.04 0.90 7.20 -51.93 -0.37 0.52 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.21 1.88 7.37 -52.49 -0.39 1.49 16 30 H 0.07 0.43 7.93 -51.93 -0.41 0.02 16 31 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.02 6.00 -51.93 -0.31 0.71 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.24 6.06 -51.93 -0.31 0.92 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -32.23 314.77 -7.60 -39.83 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.87 Total: -0.77 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.15 Total: -15.34 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.16 Total: -43.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.81 Total: -1.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.23 -7.60 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188309913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.377 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds