Wall clock time and date at job start Mon Mar 30 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46459 * 2 1 4 4 C 1.52994 * 109.47434 * 119.99893 * 2 1 3 5 5 C 1.50700 * 109.47384 * 185.00017 * 4 2 1 6 6 H 1.07998 * 119.99737 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00148 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00137 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47282 * 89.99907 * 9 7 5 11 11 H 1.48501 * 109.47100 * 210.00136 * 9 7 5 12 12 H 1.48508 * 109.47006 * 329.99967 * 9 7 5 13 13 S 1.81002 * 109.47238 * 240.00726 * 2 1 3 14 14 C 1.76199 * 100.00203 * 64.99470 * 13 2 1 15 15 N 1.31284 * 126.48371 * 0.14285 * 14 13 2 16 16 N 1.28530 * 109.85475 * 180.25978 * 15 14 13 17 17 C 1.30294 * 110.07622 * 359.76188 * 16 15 14 18 18 N 1.36536 * 126.48591 * 180.02562 * 14 13 2 19 19 C 1.46504 * 127.13744 * 0.02562 * 18 14 13 20 20 C 1.53006 * 109.46883 * 179.70882 * 19 18 14 21 21 C 1.52999 * 109.47050 * 59.71680 * 19 18 14 22 22 C 1.52997 * 109.47417 * 299.70968 * 19 18 14 23 23 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46942 * 299.99556 * 1 2 3 25 25 H 1.09000 * 109.47075 * 59.99773 * 1 2 3 26 26 H 1.08997 * 109.47115 * 305.00924 * 4 2 1 27 27 H 1.09004 * 109.46779 * 65.00209 * 4 2 1 28 28 H 0.97000 * 120.00488 * 179.97438 * 8 7 5 29 29 H 1.08002 * 126.33478 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.46801 * 300.00349 * 20 19 18 31 31 H 1.09001 * 109.46998 * 59.99945 * 20 19 18 32 32 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.47160 * 179.97438 * 21 19 18 34 34 H 1.09002 * 109.46719 * 299.99449 * 21 19 18 35 35 H 1.08993 * 109.47839 * 59.99291 * 21 19 18 36 36 H 1.09001 * 109.47375 * 300.00052 * 22 19 18 37 37 H 1.09002 * 109.46777 * 60.00607 * 22 19 18 38 38 H 1.09000 * 109.47140 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0789 -0.0854 0.5395 7 6 4.2305 -1.1934 2.3577 8 7 5.5412 -1.1002 2.4133 9 14 3.3018 -2.1098 3.6946 10 1 3.1712 -3.5396 3.3155 11 1 4.0451 -2.0032 4.9757 12 1 1.9506 -1.5149 3.8553 13 16 2.1334 -0.8531 -1.4780 14 6 1.5439 0.2425 -2.7257 15 7 0.8654 1.3501 -2.5350 16 7 0.5941 1.8961 -3.6665 17 6 1.0832 1.1788 -4.6380 18 7 1.7082 0.1013 -4.0738 19 6 2.4041 -0.9830 -4.7712 20 6 2.3389 -0.7428 -6.2809 21 6 1.7334 -2.3171 -4.4378 22 6 3.8667 -1.0213 -4.3236 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7517 -1.7715 1.2055 28 1 6.0256 -1.5069 3.1487 29 1 1.0082 1.3949 -5.6935 30 1 1.2969 -0.7154 -6.5997 31 1 2.8166 0.2077 -6.5186 32 1 2.8563 -1.5497 -6.7999 33 1 2.2509 -3.1237 -4.9570 34 1 1.7799 -2.4882 -3.3623 35 1 0.6915 -2.2898 -4.7566 36 1 4.3445 -0.0709 -4.5613 37 1 3.9131 -1.1925 -3.2482 38 1 4.3845 -1.8277 -4.8429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188309913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:18 Heat of formation + Delta-G solvation = 44.459524 kcal Electronic energy + Delta-G solvation = -18952.020479 eV Core-core repulsion = 16149.145758 eV Total energy + Delta-G solvation = -2802.874721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.88682 -38.52779 -36.49339 -34.18431 -32.83284 -31.84244 -29.82324 -28.44016 -28.41584 -24.96968 -24.75069 -22.99219 -22.47834 -21.11577 -18.90424 -18.55605 -17.35529 -17.07447 -16.51348 -16.28046 -15.86725 -15.14033 -14.91410 -14.87717 -14.35596 -14.18846 -13.78339 -13.46347 -13.41504 -13.27269 -13.19150 -12.80038 -12.71212 -12.44896 -12.37827 -12.27128 -12.12800 -11.78513 -11.66720 -11.57552 -11.42786 -11.14933 -10.93075 -10.84725 -10.70611 -8.51950 -8.24846 -6.29924 0.25204 0.72506 1.28222 1.38055 1.40319 1.50811 1.68296 1.82281 2.37781 3.09717 3.42917 3.68087 3.70251 3.84255 4.00260 4.17935 4.22694 4.41926 4.49603 4.58161 4.59694 4.68772 4.71871 4.81850 4.82996 4.86475 4.93949 4.99823 5.10053 5.11958 5.21405 5.27373 5.33308 5.34641 5.60466 5.92150 6.28614 6.76460 7.33171 7.64549 8.90476 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.005702 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.044152 B = 4909.566058 C = 5443.368564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 H 0.068 0.932 4 C 0.006 3.994 5 C -0.525 4.525 6 H 0.040 0.960 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.244 1.244 13 S 0.021 5.979 14 C 0.153 3.847 15 N -0.333 5.333 16 N -0.338 5.338 17 C 0.167 3.833 18 N -0.454 5.454 19 C 0.149 3.851 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.169 4.169 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.266 0.734 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -4.088 -18.477 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.187 4.187 3 H 0.087 0.913 4 C -0.033 4.033 5 C -0.564 4.564 6 H 0.058 0.942 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.764 3.236 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.168 1.168 13 S 0.251 5.749 14 C -0.223 4.223 15 N -0.177 5.177 16 N -0.176 5.176 17 C -0.124 4.124 18 N -0.149 5.149 19 C 0.066 3.934 20 C -0.207 4.207 21 C -0.223 4.223 22 C -0.227 4.227 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.278 0.722 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.477 -4.020 -17.774 20.098 hybrid contribution 0.261 0.149 0.442 0.534 sum -8.216 -3.871 -17.332 19.568 Atomic orbital electron populations 1.22043 0.91752 1.02785 1.03068 1.23274 0.99286 1.01304 0.94811 0.91314 1.19455 0.95045 0.96201 0.92593 1.21337 0.91450 1.34608 1.08979 0.94158 1.25886 0.95481 0.96847 1.00335 1.70056 1.08479 1.46720 1.33432 0.85796 0.79934 0.79625 0.78228 1.18990 1.21198 1.16758 1.85761 1.68898 1.26603 0.93653 1.27197 1.04312 1.01444 0.89311 1.74580 1.17474 1.06426 1.19215 1.73810 1.22273 1.26037 0.95507 1.27315 0.96681 0.85675 1.02714 1.47265 1.42019 1.21524 1.04100 1.21376 0.92128 0.85048 0.94823 1.22182 1.04661 1.04968 0.88863 1.22311 1.01614 0.95269 1.03057 1.22333 0.93703 1.04019 1.02626 0.91264 0.90967 0.91862 0.93821 0.95040 0.92542 0.72215 0.90054 0.90679 0.87454 0.87310 0.92755 0.91350 0.92315 0.93119 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.01 71.98 0.65 -4.17 16 2 C -0.06 -2.40 2.29 30.59 0.07 -2.33 16 3 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 4 C 0.01 0.28 3.51 29.85 0.10 0.38 16 5 C -0.53 -29.72 9.09 25.60 0.23 -29.48 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 7 C 0.01 0.68 5.47 84.65 0.46 1.14 16 8 N -0.95 -58.71 13.96 21.45 0.30 -58.42 16 9 Si 0.94 43.23 27.47 68.60 1.88 45.11 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 13 S 0.02 0.82 16.87 -56.49 -0.95 -0.13 16 14 C 0.15 5.49 7.24 179.55 1.30 6.79 16 15 N -0.33 -13.17 9.75 -56.85 -0.55 -13.72 16 16 N -0.34 -11.84 12.18 -59.33 -0.72 -12.56 16 17 C 0.17 4.19 11.70 179.77 2.10 6.29 16 18 N -0.45 -12.23 2.66 -483.69 -1.29 -13.51 16 19 C 0.15 2.82 1.10 3.60 0.00 2.82 16 20 C -0.15 -1.46 7.41 71.98 0.53 -0.93 16 21 C -0.16 -2.97 8.51 71.98 0.61 -2.36 16 22 C -0.17 -3.65 8.52 71.98 0.61 -3.04 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 2.30 5.92 -2.39 -0.01 2.29 16 26 H 0.04 1.98 7.20 -2.39 -0.02 1.96 16 27 H 0.03 1.40 7.57 -2.38 -0.02 1.38 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.26 3.47 7.37 -2.91 -0.02 3.45 16 30 H 0.08 0.62 7.93 -2.39 -0.02 0.60 16 31 H 0.07 0.68 7.94 -2.39 -0.02 0.66 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.31 6.00 -2.39 -0.01 1.29 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.48 6.06 -2.39 -0.01 1.47 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.55 314.77 6.33 -67.22 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.98 Total: 10.90 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 6.69 Total: -24.89 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -2.26 Total: -98.21 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -0.95 Total: -0.13 kcal Total: -73.55 6.33 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188309913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.677 kcal (2) G-P(sol) polarization free energy of solvation -73.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds