Wall clock time and date at job start Mon Mar 30 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 S 1.81002 * 109.47326 * 120.00187 * 2 1 3 14 14 C 1.76193 * 99.99889 * 295.00017 * 13 2 1 15 15 N 1.31290 * 126.48748 * 359.68507 * 14 13 2 16 16 N 1.28526 * 109.86023 * 179.88103 * 15 14 13 17 17 C 1.30301 * 110.07621 * 0.39481 * 16 15 14 18 18 N 1.36543 * 126.48265 * 179.97438 * 14 13 2 19 19 C 1.46500 * 127.14294 * 359.96505 * 18 14 13 20 20 C 1.53003 * 109.46934 * 180.02562 * 19 18 14 21 21 C 1.52999 * 109.46806 * 299.99922 * 19 18 14 22 22 C 1.52993 * 109.47090 * 59.99836 * 19 18 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.07997 * 126.34372 * 179.76412 * 17 16 15 30 30 H 1.08994 * 109.47379 * 59.99751 * 20 19 18 31 31 H 1.08998 * 109.46621 * 180.02562 * 20 19 18 32 32 H 1.09006 * 109.46762 * 299.99512 * 20 19 18 33 33 H 1.08997 * 109.47212 * 60.00170 * 21 19 18 34 34 H 1.09002 * 109.46859 * 180.02562 * 21 19 18 35 35 H 1.09000 * 109.47510 * 299.99768 * 21 19 18 36 36 H 1.09006 * 109.47471 * 59.99957 * 22 19 18 37 37 H 1.08997 * 109.47212 * 179.97438 * 22 19 18 38 38 H 1.08997 * 109.47302 * 300.00059 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 16 2.1334 -0.8533 1.4778 14 6 1.5440 0.2421 2.7257 15 7 0.8682 1.3515 2.5350 16 7 0.5986 1.8985 3.6663 17 6 1.0889 1.1818 4.6378 18 7 1.7084 0.1007 4.0738 19 6 2.4041 -0.9836 4.7711 20 6 2.3447 -0.7400 6.2805 21 6 1.7287 -2.3167 4.4432 22 6 3.8647 -1.0269 4.3181 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 4.0608 -2.2443 -4.0351 29 1 1.0189 1.4006 5.6931 30 1 1.3040 -0.7095 6.6029 31 1 2.8627 -1.5466 6.7993 32 1 2.8256 0.2098 6.5144 33 1 1.7706 -2.4905 3.3680 34 1 2.2460 -3.1235 4.9625 35 1 0.6880 -2.2860 4.7660 36 1 4.3460 -0.0771 4.5516 37 1 4.3825 -1.8334 4.8372 38 1 3.9067 -1.2006 3.2428 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188309928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:21 Heat of formation + Delta-G solvation = 58.231258 kcal Electronic energy + Delta-G solvation = -18937.278805 eV Core-core repulsion = 16135.001271 eV Total energy + Delta-G solvation = -2802.277534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.64757 -37.59263 -34.56157 -32.11672 -31.72985 -30.49912 -27.81227 -27.58941 -27.36247 -23.57139 -23.29163 -21.75285 -21.04308 -19.81638 -17.47397 -16.37408 -16.01638 -15.85280 -15.05266 -14.67254 -14.44267 -14.26194 -14.00554 -13.29996 -12.88835 -12.64995 -12.61925 -12.49020 -12.02950 -11.82413 -11.62910 -11.59091 -11.40240 -11.24310 -10.97766 -10.79197 -10.68897 -10.49976 -10.23849 -10.02293 -9.71510 -9.40912 -9.35925 -9.15044 -8.40943 -7.04187 -6.05964 -4.08301 1.67895 1.94379 2.72405 2.91686 3.11734 3.29964 3.36609 3.40802 4.22413 4.42585 4.46885 4.56990 4.65724 5.14229 5.24329 5.31270 5.36035 5.41997 5.46036 5.54520 5.58844 5.60242 5.79539 5.84028 5.92112 6.04462 6.11753 6.19271 6.29454 6.61076 6.66260 6.85803 6.96681 7.51131 7.55527 7.91177 8.28078 8.93434 8.96740 9.56058 11.05057 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.005891 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.112972 B = 4751.847185 C = 5391.296100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 H 0.090 0.910 4 C 0.037 3.963 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 S 0.016 5.984 14 C 0.169 3.831 15 N -0.300 5.300 16 N -0.295 5.295 17 C 0.138 3.862 18 N -0.461 5.461 19 C 0.158 3.842 20 C -0.155 4.155 21 C -0.166 4.166 22 C -0.168 4.168 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.262 0.738 29 H 0.212 0.788 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -1.204 18.392 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 H 0.108 0.892 4 C -0.002 4.002 5 C -0.561 4.561 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 S 0.246 5.754 14 C -0.205 4.205 15 N -0.144 5.144 16 N -0.134 5.134 17 C -0.152 4.152 18 N -0.157 5.157 19 C 0.074 3.926 20 C -0.213 4.213 21 C -0.224 4.224 22 C -0.226 4.226 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.389 -1.182 17.612 17.812 hybrid contribution 1.022 0.221 0.570 1.191 sum -1.367 -0.960 18.182 18.258 Atomic orbital electron populations 1.22113 0.94245 1.01735 1.02493 1.23690 0.97527 1.02698 0.94982 0.89164 1.19094 0.96444 0.95575 0.89038 1.21260 0.91514 1.34762 1.08536 0.91894 1.24978 0.98447 0.95135 0.95518 1.69952 1.35635 1.35642 1.11992 0.86602 0.85729 0.78598 0.77212 1.20587 1.21223 1.19746 1.85859 1.68044 1.27229 0.94295 1.27590 1.03472 1.01568 0.87912 1.74685 1.16563 1.05577 1.17617 1.73893 1.19855 1.24547 0.95101 1.26401 0.99973 0.87386 1.01407 1.46942 1.42778 1.20578 1.05410 1.20932 0.93168 0.85891 0.92633 1.22145 1.03262 1.03539 0.92312 1.22296 1.00852 0.94614 1.04671 1.22314 0.92679 1.03124 1.04530 0.91738 0.92766 0.92044 0.95543 0.94192 0.92871 0.77195 0.91392 0.89898 0.91367 0.89899 0.90196 0.91855 0.91797 0.90226 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.01 37.16 0.33 -2.43 16 2 C -0.06 -1.27 2.29 -26.73 -0.06 -1.33 16 3 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 4 C 0.04 0.93 4.44 -27.88 -0.12 0.80 16 5 C -0.52 -14.17 8.53 -34.44 -0.29 -14.47 16 6 H 0.06 1.69 7.60 -52.48 -0.40 1.29 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 S 0.02 0.30 16.87 -107.50 -1.81 -1.52 16 14 C 0.17 3.01 7.24 -88.33 -0.64 2.37 16 15 N -0.30 -5.93 9.76 30.68 0.30 -5.63 16 16 N -0.29 -5.31 12.18 29.90 0.36 -4.94 16 17 C 0.14 1.91 11.70 -88.94 -1.04 0.87 16 18 N -0.46 -6.54 2.66 -104.23 -0.28 -6.82 16 19 C 0.16 1.67 1.10 -131.82 -0.14 1.53 16 20 C -0.16 -1.08 7.41 37.16 0.28 -0.81 16 21 C -0.17 -1.70 8.52 37.16 0.32 -1.38 16 22 C -0.17 -1.85 8.52 37.15 0.32 -1.53 16 23 H 0.06 1.23 5.92 -51.93 -0.31 0.92 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.21 1.89 7.37 -52.49 -0.39 1.50 16 30 H 0.07 0.43 7.94 -51.93 -0.41 0.02 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 7.93 -51.93 -0.41 0.04 16 33 H 0.08 1.04 6.03 -51.93 -0.31 0.73 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.17 6.03 -51.93 -0.31 0.86 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -31.62 318.38 -7.98 -39.60 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.91 Total: -1.68 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.16 Total: -14.78 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 1.12 Total: -42.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.81 Total: -1.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.62 -7.98 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188309928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.827 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds