Wall clock time and date at job start Mon Mar 30 2020 01:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 S 1.81002 * 109.47326 * 120.00187 * 2 1 3 14 14 C 1.76193 * 99.99889 * 295.00017 * 13 2 1 15 15 N 1.31290 * 126.48748 * 359.68507 * 14 13 2 16 16 N 1.28526 * 109.86023 * 179.88103 * 15 14 13 17 17 C 1.30301 * 110.07621 * 0.39481 * 16 15 14 18 18 N 1.36543 * 126.48265 * 179.97438 * 14 13 2 19 19 C 1.46500 * 127.14294 * 359.96505 * 18 14 13 20 20 C 1.53003 * 109.46934 * 180.02562 * 19 18 14 21 21 C 1.52999 * 109.46806 * 299.99922 * 19 18 14 22 22 C 1.52993 * 109.47090 * 59.99836 * 19 18 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 29 29 H 1.07997 * 126.34372 * 179.76412 * 17 16 15 30 30 H 1.08994 * 109.47379 * 59.99751 * 20 19 18 31 31 H 1.08998 * 109.46621 * 180.02562 * 20 19 18 32 32 H 1.09006 * 109.46762 * 299.99512 * 20 19 18 33 33 H 1.08997 * 109.47212 * 60.00170 * 21 19 18 34 34 H 1.09002 * 109.46859 * 180.02562 * 21 19 18 35 35 H 1.09000 * 109.47510 * 299.99768 * 21 19 18 36 36 H 1.09006 * 109.47471 * 59.99957 * 22 19 18 37 37 H 1.08997 * 109.47212 * 179.97438 * 22 19 18 38 38 H 1.08997 * 109.47302 * 300.00059 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 16 2.1334 -0.8533 1.4778 14 6 1.5440 0.2421 2.7257 15 7 0.8682 1.3515 2.5350 16 7 0.5986 1.8985 3.6663 17 6 1.0889 1.1818 4.6378 18 7 1.7084 0.1007 4.0738 19 6 2.4041 -0.9836 4.7711 20 6 2.3447 -0.7400 6.2805 21 6 1.7287 -2.3167 4.4432 22 6 3.8647 -1.0269 4.3181 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2616 -2.1371 28 1 4.0608 -2.2443 -4.0351 29 1 1.0189 1.4006 5.6931 30 1 1.3040 -0.7095 6.6029 31 1 2.8627 -1.5466 6.7993 32 1 2.8256 0.2098 6.5144 33 1 1.7706 -2.4905 3.3680 34 1 2.2460 -3.1235 4.9625 35 1 0.6880 -2.2860 4.7660 36 1 4.3460 -0.0771 4.5516 37 1 4.3825 -1.8334 4.8372 38 1 3.9067 -1.2006 3.2428 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188309928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:20 Heat of formation + Delta-G solvation = 41.523463 kcal Electronic energy + Delta-G solvation = -18938.003310 eV Core-core repulsion = 16135.001271 eV Total energy + Delta-G solvation = -2803.002038 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.87293 -38.51473 -36.45439 -34.10404 -32.81863 -31.78876 -29.36785 -28.42661 -28.39955 -25.27210 -24.74263 -22.98213 -22.55610 -21.11373 -18.56510 -18.49169 -17.32077 -17.06129 -16.56328 -16.29496 -15.87137 -15.11925 -14.90587 -14.82453 -14.36031 -13.96402 -13.62647 -13.39296 -13.31366 -13.23449 -13.08278 -12.77943 -12.66839 -12.50050 -12.44965 -12.38747 -12.16060 -12.11913 -11.62721 -11.54323 -11.23498 -11.11077 -10.91943 -10.84844 -10.52645 -8.51018 -8.19801 -6.29102 0.26938 0.73531 1.30560 1.40812 1.41815 1.52722 1.69707 1.83558 2.41602 3.15074 3.44133 3.69161 3.71656 3.85594 4.08617 4.22125 4.24623 4.43184 4.53653 4.60005 4.60607 4.70137 4.72930 4.83025 4.84291 4.90434 4.97313 5.03049 5.11922 5.22800 5.25344 5.35320 5.39383 5.49578 5.77127 5.93612 6.17234 6.82489 7.39113 7.66088 8.91841 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.005891 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.112972 B = 4751.847185 C = 5391.296100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 H 0.071 0.929 4 C 0.047 3.953 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.268 1.268 13 S 0.027 5.973 14 C 0.153 3.847 15 N -0.334 5.334 16 N -0.338 5.338 17 C 0.167 3.833 18 N -0.454 5.454 19 C 0.148 3.852 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.169 4.169 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.008 0.992 27 H 0.016 0.984 28 H 0.264 0.736 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 -1.584 21.546 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.190 4.190 3 H 0.090 0.910 4 C 0.008 3.992 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.192 1.192 13 S 0.256 5.744 14 C -0.223 4.223 15 N -0.178 5.178 16 N -0.177 5.177 17 C -0.124 4.124 18 N -0.149 5.149 19 C 0.066 3.934 20 C -0.207 4.207 21 C -0.223 4.223 22 C -0.227 4.227 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.026 0.974 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.278 0.722 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.425 -1.565 20.782 20.889 hybrid contribution 0.708 0.335 -0.262 0.826 sum -0.717 -1.230 20.519 20.569 Atomic orbital electron populations 1.21998 0.92569 1.02200 1.02648 1.23391 0.98952 1.01327 0.95344 0.91049 1.18857 0.95625 0.94550 0.90152 1.21537 0.92632 1.34472 1.08516 0.92041 1.25814 1.03229 0.94759 0.95130 1.70069 1.37520 1.36611 1.12664 0.85577 0.80016 0.78956 0.77372 1.19437 1.20808 1.19214 1.85657 1.68566 1.26832 0.93334 1.27233 1.04407 1.01327 0.89324 1.74593 1.17489 1.06500 1.19224 1.73817 1.22157 1.26191 0.95518 1.27319 0.96744 0.85625 1.02691 1.47274 1.42182 1.21357 1.04051 1.21384 0.92343 0.84912 0.94801 1.22179 1.04579 1.05003 0.88912 1.22316 1.01526 0.95454 1.03049 1.22336 0.93446 1.04151 1.02721 0.91677 0.92065 0.91718 0.97354 0.96630 0.92684 0.72221 0.90249 0.87448 0.90563 0.92816 0.87263 0.91600 0.92049 0.87230 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.01 71.98 0.65 -4.61 16 2 C -0.06 -2.69 2.29 30.60 0.07 -2.62 16 3 H 0.07 3.37 8.14 -2.40 -0.02 3.35 16 4 C 0.05 2.44 4.44 29.85 0.13 2.57 16 5 C -0.53 -29.72 8.53 25.60 0.22 -29.50 16 6 H 0.06 3.37 7.60 -2.91 -0.02 3.35 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 9 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 S 0.03 1.03 16.87 -56.49 -0.95 0.08 16 14 C 0.15 5.44 7.24 179.55 1.30 6.75 16 15 N -0.33 -13.25 9.76 -56.85 -0.55 -13.81 16 16 N -0.34 -11.82 12.18 -59.32 -0.72 -12.55 16 17 C 0.17 4.13 11.70 179.76 2.10 6.23 16 18 N -0.45 -11.96 2.66 -483.69 -1.29 -13.25 16 19 C 0.15 2.69 1.10 3.60 0.00 2.69 16 20 C -0.15 -1.36 7.41 71.98 0.53 -0.82 16 21 C -0.17 -2.97 8.52 71.98 0.61 -2.36 16 22 C -0.17 -3.31 8.52 71.98 0.61 -2.70 16 23 H 0.06 2.54 5.92 -2.39 -0.01 2.52 16 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 29 H 0.26 3.37 7.37 -2.91 -0.02 3.35 16 30 H 0.08 0.59 7.94 -2.39 -0.02 0.57 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.62 7.93 -2.38 -0.02 0.60 16 33 H 0.05 1.30 6.03 -2.39 -0.01 1.29 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.41 6.03 -2.39 -0.01 1.40 16 Total: -1.00 -70.99 318.38 6.53 -64.46 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.03 Total: 7.52 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 6.70 Total: -23.39 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -2.28 Total: -94.58 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -0.95 Total: 0.08 kcal Total: -70.99 6.53 -64.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188309928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.982 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds