Wall clock time and date at job start Mon Mar 30 2020 01:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46934 * 2 1 4 4 C 1.50699 * 109.47367 * 240.00066 * 2 1 3 5 5 H 1.07996 * 120.00134 * 239.99793 * 4 2 1 6 6 C 1.37882 * 120.00203 * 59.99360 * 4 2 1 7 7 N 1.31513 * 119.99556 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00090 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47213 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46929 * 120.00319 * 8 6 4 11 11 H 1.48500 * 109.47128 * 240.00205 * 8 6 4 12 12 N 1.46498 * 109.47124 * 119.99832 * 2 1 3 13 13 C 1.46500 * 120.00209 * 60.00487 * 12 2 1 14 14 C 1.34783 * 119.99765 * 240.00262 * 12 2 1 15 15 O 1.21279 * 119.99895 * 0.02562 * 14 12 2 16 16 C 1.50698 * 119.99618 * 180.02562 * 14 12 2 17 17 H 1.09003 * 110.01714 * 59.94448 * 16 14 12 18 18 C 1.53869 * 110.03390 * 298.54436 * 16 14 12 19 19 C 1.54270 * 106.63967 * 240.69268 * 18 16 14 20 20 C 1.54961 * 104.16191 * 336.44607 * 19 18 16 21 21 H 1.09001 * 110.71970 * 279.57802 * 20 19 18 22 22 C 1.50697 * 110.92464 * 156.29299 * 20 19 18 23 23 O 1.20826 * 120.00179 * 246.53964 * 22 20 19 24 24 O 1.34235 * 119.99613 * 66.54291 * 22 20 19 25 25 C 1.54268 * 110.02899 * 181.37559 * 16 14 12 26 26 H 1.08999 * 109.47427 * 299.99620 * 1 2 3 27 27 H 1.09004 * 109.47297 * 60.00262 * 1 2 3 28 28 H 1.09008 * 109.46915 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99424 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46756 * 270.00147 * 13 12 2 31 31 H 1.08996 * 109.47273 * 29.99468 * 13 12 2 32 32 H 1.08996 * 109.47045 * 150.00221 * 13 12 2 33 33 H 1.09002 * 110.03268 * 0.02562 * 18 16 14 34 34 H 1.08995 * 110.03391 * 121.38661 * 18 16 14 35 35 H 1.08997 * 110.48585 * 95.09409 * 19 18 16 36 36 H 1.09002 * 110.48442 * 217.73292 * 19 18 16 37 37 H 0.96696 * 116.99575 * 180.02562 * 24 22 20 38 38 H 1.08997 * 110.48788 * 261.57302 * 25 16 14 39 39 H 1.09001 * 110.48482 * 24.21983 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1660 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.0857 1.1258 1.8916 16 6 3.2960 -0.7460 3.3135 17 1 3.9026 -1.6050 3.0265 18 6 2.1095 -1.2042 4.1795 19 6 2.2599 -0.4991 5.5434 20 6 3.7716 -0.1712 5.6361 21 1 4.3381 -1.0487 5.9479 22 6 4.0157 0.9813 6.5758 23 8 4.4343 2.0311 6.1484 24 8 3.7682 0.8416 7.8877 25 6 4.1266 0.2225 4.1807 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7094 1.1616 -3.4845 30 1 0.7376 -2.1443 1.9993 31 1 1.5296 -2.5969 0.4709 32 1 2.4630 -2.5817 1.9864 33 1 1.1700 -0.9130 3.7098 34 1 2.1402 -2.2855 4.3129 35 1 1.6690 0.4165 5.5667 36 1 1.9631 -1.1664 6.3526 37 1 3.9398 1.6087 8.4509 38 1 5.1916 0.0818 3.9964 39 1 3.8374 1.2547 3.9834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235410250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:14 Heat of formation + Delta-G solvation = -163.950137 kcal Electronic energy + Delta-G solvation = -21308.198996 eV Core-core repulsion = 18021.241332 eV Total energy + Delta-G solvation = -3286.957664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69035 -40.82468 -38.14617 -37.07567 -37.01336 -34.79879 -31.99363 -30.19094 -29.78779 -27.52023 -27.30539 -24.94240 -23.29836 -21.76460 -20.99744 -19.77546 -18.96741 -18.45172 -18.14695 -17.54557 -17.12033 -16.96304 -16.29963 -15.95299 -15.52251 -14.85866 -14.56522 -14.33645 -14.16273 -13.85190 -13.63754 -13.33265 -12.97623 -12.87827 -12.70651 -12.67470 -12.57503 -12.46255 -12.21740 -12.16769 -12.14441 -12.09946 -11.78152 -11.66954 -11.39451 -11.17277 -10.60680 -10.40207 -9.28320 -8.14540 -6.31356 1.20706 1.40637 1.42483 1.53833 1.86168 2.08230 2.35974 2.55201 3.13524 3.37962 3.46331 3.85580 4.11650 4.28974 4.32610 4.40571 4.49971 4.59269 4.61299 4.71532 4.78504 4.80887 4.89579 4.95242 5.05617 5.08648 5.13067 5.25574 5.32106 5.33434 5.48801 5.62406 5.64450 5.69211 6.06178 6.17341 6.77826 6.89303 7.01286 7.34016 7.53449 8.90114 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.004217 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.007764 B = 6637.527669 C = 6787.606546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.259 3.741 3 H 0.001 0.999 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.598 5.598 13 C 0.078 3.922 14 C 0.493 3.507 15 O -0.612 6.612 16 C -0.102 4.102 17 H 0.130 0.870 18 C -0.109 4.109 19 C -0.102 4.102 20 C -0.079 4.079 21 H 0.157 0.843 22 C 0.488 3.512 23 O -0.559 6.559 24 O -0.505 6.505 25 C -0.101 4.101 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.425 0.575 38 H 0.078 0.922 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -10.725 19.416 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.156 3.844 3 H 0.019 0.981 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.328 5.328 13 C -0.063 4.063 14 C 0.282 3.718 15 O -0.495 6.495 16 C -0.123 4.123 17 H 0.148 0.852 18 C -0.146 4.146 19 C -0.140 4.140 20 C -0.098 4.098 21 H 0.174 0.826 22 C 0.332 3.668 23 O -0.450 6.450 24 O -0.318 6.318 25 C -0.139 4.139 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.391 -10.105 18.808 21.484 hybrid contribution 0.363 1.164 -1.051 1.610 sum 2.754 -8.941 17.757 20.070 Atomic orbital electron populations 1.21842 0.97159 1.00139 0.99661 1.18509 0.91632 0.92057 0.82158 0.98055 1.21629 1.31717 1.13030 0.91075 0.91809 1.25787 0.95107 0.95658 1.02196 1.70049 1.37517 1.24031 1.24304 0.85375 0.78201 0.78487 0.78747 1.18584 1.19948 1.21393 1.48194 1.49006 1.13512 1.22100 1.21959 1.01555 0.80268 1.02563 1.21482 0.78118 0.86694 0.85463 1.90624 1.60422 1.20275 1.78150 1.21972 0.99224 0.99279 0.91785 0.85182 1.22272 0.95883 1.03133 0.93354 1.22354 0.91643 1.01142 0.98847 1.22105 1.00964 0.95760 0.90965 0.82600 1.23706 0.71943 0.88957 0.82179 1.90757 1.44104 1.31660 1.78482 1.84493 1.80096 1.48067 1.19158 1.22193 1.00232 0.99468 0.91978 0.96430 0.91687 0.93177 0.92734 0.91290 0.91694 0.88578 0.92195 0.85864 0.93272 0.86301 0.71340 0.90281 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.97 71.98 0.65 -5.71 16 2 C 0.26 13.76 2.64 44.25 0.12 13.88 16 3 H 0.00 0.09 6.90 -2.39 -0.02 0.08 16 4 C -0.54 -29.40 7.99 25.60 0.20 -29.20 16 5 H 0.06 3.36 7.33 -2.91 -0.02 3.34 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 N -0.60 -25.07 2.72 -826.80 -2.25 -27.32 16 13 C 0.08 2.29 8.03 127.77 1.03 3.32 16 14 C 0.49 20.55 6.86 87.66 0.60 21.15 16 15 O -0.61 -32.93 14.74 -3.03 -0.04 -32.98 16 16 C -0.10 -2.68 2.43 -10.82 -0.03 -2.70 16 17 H 0.13 2.61 7.42 -2.39 -0.02 2.60 16 18 C -0.11 -2.00 4.91 31.32 0.15 -1.84 16 19 C -0.10 -1.69 6.28 31.70 0.20 -1.49 16 20 C -0.08 -1.46 3.39 -10.22 -0.03 -1.50 16 21 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 22 C 0.49 10.89 7.65 71.23 0.54 11.44 16 23 O -0.56 -18.14 16.49 21.96 0.36 -17.78 16 24 O -0.51 -7.31 13.42 -51.46 -0.69 -8.00 16 25 C -0.10 -2.81 5.22 31.67 0.17 -2.64 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 3.56 6.07 -2.38 -0.01 3.55 16 28 H 0.05 2.19 7.67 -2.38 -0.02 2.17 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.07 1.68 7.48 -2.38 -0.02 1.66 16 31 H 0.06 2.10 7.02 -2.39 -0.02 2.08 16 32 H 0.10 1.99 6.19 -2.39 -0.01 1.97 16 33 H 0.06 1.37 6.68 -2.39 -0.02 1.35 16 34 H 0.12 1.21 8.12 -2.39 -0.02 1.20 16 35 H 0.05 1.04 8.05 -2.39 -0.02 1.02 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.43 2.96 9.10 -74.06 -0.67 2.29 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.02 6.20 -2.39 -0.01 2.00 16 Total: -1.00 -81.98 314.31 4.08 -77.90 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.39 Total: 10.86 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.04 Total: 5.80 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.01 Total: -81.18 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -0.37 Total: -58.76 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -81.98 4.08 -77.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235410250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.048 kcal (2) G-P(sol) polarization free energy of solvation -81.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds