Wall clock time and date at job start Mon Mar 30 2020 01:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47335 * 2 1 4 4 N 1.46904 * 109.47434 * 239.99839 * 2 1 3 5 5 C 1.46900 * 110.99842 * 84.99714 * 4 2 1 6 6 C 1.53005 * 109.46724 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46730 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46909 * 180.02562 * 7 6 5 9 9 H 1.08008 * 119.99790 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99900 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99917 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99778 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47066 * 59.99679 * 12 10 8 14 14 H 1.48504 * 109.46846 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47082 * 299.99660 * 12 10 8 16 16 C 1.50704 * 109.47466 * 119.99844 * 2 1 3 17 17 C 1.38423 * 120.02305 * 255.00583 * 16 2 1 18 18 F 1.35094 * 120.01539 * 359.94770 * 17 16 2 19 19 C 1.38470 * 119.97194 * 179.97438 * 17 16 2 20 20 C 1.38215 * 120.02840 * 359.97438 * 19 17 16 21 21 C 1.38211 * 120.04705 * 0.02562 * 20 19 17 22 22 C 1.38417 * 120.02586 * 74.97307 * 16 2 1 23 23 F 1.35097 * 120.01118 * 0.05214 * 22 16 2 24 24 H 1.09005 * 109.46518 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46999 * 300.00125 * 1 2 3 26 26 H 1.08991 * 109.47003 * 60.00496 * 1 2 3 27 27 H 1.00895 * 111.00014 * 208.95732 * 4 2 1 28 28 H 1.08999 * 109.47082 * 300.00055 * 5 4 2 29 29 H 1.08994 * 109.47151 * 60.00694 * 5 4 2 30 30 H 1.08999 * 109.47042 * 299.99659 * 6 5 4 31 31 H 1.08994 * 109.47083 * 60.00232 * 6 5 4 32 32 H 1.08999 * 109.46771 * 299.99447 * 7 6 5 33 33 H 1.08990 * 109.47354 * 59.99592 * 7 6 5 34 34 H 0.96998 * 119.99864 * 179.97438 * 11 10 8 35 35 H 1.07998 * 119.99016 * 179.97438 * 19 17 16 36 36 H 1.07993 * 119.97793 * 179.72581 * 20 19 17 37 37 H 1.07993 * 119.98298 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5952 -0.5333 -3.5744 7 6 2.6611 0.4199 -4.7694 8 6 3.1655 -0.3247 -5.9787 9 1 3.4145 -1.3729 -5.9024 10 6 3.3100 0.3324 -7.1822 11 7 3.0073 1.6089 -7.2749 12 14 3.9358 -0.5904 -8.6809 13 1 3.0133 -1.7115 -8.9927 14 1 3.9998 0.3348 -9.8408 15 1 5.2914 -1.1281 -8.4007 16 6 2.0324 -0.7104 1.2305 17 6 2.5557 0.0174 2.2853 18 9 2.6172 1.3650 2.2118 19 6 3.0165 -0.6363 3.4156 20 6 2.9538 -2.0150 3.4911 21 6 2.4315 -2.7427 2.4385 22 6 1.9704 -2.0910 1.3070 23 9 1.4603 -2.8026 0.2781 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 2.9173 -1.1205 -1.0287 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1183 30 1 3.5905 -0.9273 -3.3690 31 1 1.9185 -1.3567 -3.8029 32 1 1.6659 0.8142 -4.9750 33 1 3.3379 1.2430 -4.5407 34 1 3.1093 2.0712 -8.1214 35 1 3.4252 -0.0688 4.2385 36 1 3.3175 -2.5243 4.3712 37 1 2.3833 -3.8198 2.4984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264878454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:20 Heat of formation + Delta-G solvation = -81.094546 kcal Electronic energy + Delta-G solvation = -20024.744698 eV Core-core repulsion = 16630.292406 eV Total energy + Delta-G solvation = -3394.452292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.24021 -48.93322 -39.30245 -36.91738 -34.06085 -32.32827 -30.56112 -30.33091 -28.94296 -26.04882 -24.02106 -23.15346 -22.28021 -20.71745 -20.05911 -18.28746 -17.45412 -16.56070 -16.22526 -16.10491 -15.73061 -15.42289 -15.25704 -14.56269 -14.50528 -14.41421 -14.11618 -13.43582 -12.94166 -12.85875 -12.33225 -12.22223 -12.16784 -12.13960 -11.81752 -11.58348 -11.33644 -10.90817 -10.72051 -10.51587 -10.49724 -9.65277 -9.35165 -9.14529 -9.01043 -8.97447 -8.30518 -8.19623 -5.95768 -3.97765 0.67683 0.72187 3.07541 3.36643 3.40416 3.43451 3.67763 4.11872 4.18615 4.27826 4.49795 4.51501 4.66781 4.85011 5.21515 5.30690 5.39895 5.49050 5.60185 5.64312 5.71272 5.76036 5.84814 5.85815 5.92404 5.99115 6.25048 6.38124 6.50919 6.75520 6.79752 7.17470 7.32325 7.59421 7.72557 7.87936 8.04797 8.48146 9.09217 9.65932 11.15724 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.003462 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.348769 B = 8085.535027 C = 8412.606932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.123 3.877 3 H 0.059 0.941 4 N -0.677 5.677 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.163 4.163 17 C 0.133 3.867 18 F -0.129 7.129 19 C -0.170 4.170 20 C -0.064 4.064 21 C -0.171 4.171 22 C 0.153 3.847 23 F -0.109 7.109 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.337 0.663 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -5.764 24.412 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 H 0.077 0.923 4 N -0.309 5.309 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.165 4.165 17 C 0.113 3.887 18 F -0.108 7.108 19 C -0.189 4.189 20 C -0.082 4.082 21 C -0.190 4.190 22 C 0.133 3.867 23 F -0.087 7.087 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.512 -5.824 24.051 24.873 hybrid contribution 1.101 0.287 -0.809 1.396 sum -1.411 -5.537 23.241 23.933 Atomic orbital electron populations 1.21774 0.93176 1.02761 1.01590 1.20355 0.96632 0.95602 0.86045 0.92315 1.60735 1.33218 1.33529 1.03379 1.22205 1.00664 0.93610 0.90422 1.21615 0.99289 0.99484 0.93991 1.19060 0.97112 0.94200 0.91141 1.21227 1.43572 0.96352 0.94571 0.92717 1.25029 0.95661 0.94886 0.98946 1.69957 1.48929 1.08979 1.25799 0.86652 0.79424 0.79612 0.82275 1.20210 1.21327 1.20277 1.20165 1.04998 0.93261 0.98123 1.17255 0.99531 0.77199 0.94674 1.91525 1.94042 1.28773 1.96425 1.21164 1.04257 0.95497 0.97964 1.20835 0.96465 0.92725 0.98181 1.21280 1.02920 1.01555 0.93269 1.17199 0.95873 0.88126 0.85500 1.91627 1.83636 1.77220 1.56240 0.91688 0.92868 0.91535 0.84460 0.91233 0.95671 0.93714 0.92432 0.96561 0.96832 0.93000 0.84134 0.84061 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.35 37.16 0.35 -1.38 16 2 C 0.12 1.69 2.60 -68.86 -0.18 1.51 16 3 H 0.06 0.84 6.93 -51.93 -0.36 0.48 16 4 N -0.68 -10.60 5.02 -107.95 -0.54 -11.14 16 5 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 6 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 7 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 8 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 9 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 12 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C -0.16 -1.96 4.68 -104.49 -0.49 -2.45 16 17 C 0.13 1.45 7.24 -39.43 -0.29 1.17 16 18 F -0.13 -1.55 16.27 2.25 0.04 -1.51 16 19 C -0.17 -1.38 10.02 -39.50 -0.40 -1.78 16 20 C -0.06 -0.44 10.04 -39.60 -0.40 -0.84 16 21 C -0.17 -1.44 10.03 -39.50 -0.40 -1.84 16 22 C 0.15 1.74 6.79 -39.43 -0.27 1.47 16 23 F -0.11 -1.46 15.27 2.25 0.03 -1.42 16 24 H 0.06 0.85 7.64 -51.93 -0.40 0.45 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.88 7.45 -51.93 -0.39 0.50 16 27 H 0.34 5.16 8.06 -39.29 -0.32 4.84 16 28 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 29 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -31.24 318.40 -7.92 -39.16 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.19 Total: -1.21 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.78 Total: -18.96 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.19 Total: -37.95 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.24 -7.92 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264878454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.931 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds