Wall clock time and date at job start Mon Mar 30 2020 01:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47335 * 2 1 4 4 N 1.46904 * 109.47434 * 239.99839 * 2 1 3 5 5 C 1.46900 * 110.99842 * 84.99714 * 4 2 1 6 6 C 1.53005 * 109.46724 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46730 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46909 * 180.02562 * 7 6 5 9 9 H 1.08008 * 119.99790 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99900 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99917 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99778 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47066 * 59.99679 * 12 10 8 14 14 H 1.48504 * 109.46846 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47082 * 299.99660 * 12 10 8 16 16 C 1.50704 * 109.47466 * 119.99844 * 2 1 3 17 17 C 1.38423 * 120.02305 * 255.00583 * 16 2 1 18 18 F 1.35094 * 120.01539 * 359.94770 * 17 16 2 19 19 C 1.38470 * 119.97194 * 179.97438 * 17 16 2 20 20 C 1.38215 * 120.02840 * 359.97438 * 19 17 16 21 21 C 1.38211 * 120.04705 * 0.02562 * 20 19 17 22 22 C 1.38417 * 120.02586 * 74.97307 * 16 2 1 23 23 F 1.35097 * 120.01118 * 0.05214 * 22 16 2 24 24 H 1.09005 * 109.46518 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46999 * 300.00125 * 1 2 3 26 26 H 1.08991 * 109.47003 * 60.00496 * 1 2 3 27 27 H 1.00895 * 111.00014 * 208.95732 * 4 2 1 28 28 H 1.08999 * 109.47082 * 300.00055 * 5 4 2 29 29 H 1.08994 * 109.47151 * 60.00694 * 5 4 2 30 30 H 1.08999 * 109.47042 * 299.99659 * 6 5 4 31 31 H 1.08994 * 109.47083 * 60.00232 * 6 5 4 32 32 H 1.08999 * 109.46771 * 299.99447 * 7 6 5 33 33 H 1.08990 * 109.47354 * 59.99592 * 7 6 5 34 34 H 0.96998 * 119.99864 * 179.97438 * 11 10 8 35 35 H 1.07998 * 119.99016 * 179.97438 * 19 17 16 36 36 H 1.07993 * 119.97793 * 179.72581 * 20 19 17 37 37 H 1.07993 * 119.98298 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5952 -0.5333 -3.5744 7 6 2.6611 0.4199 -4.7694 8 6 3.1655 -0.3247 -5.9787 9 1 3.4145 -1.3729 -5.9024 10 6 3.3100 0.3324 -7.1822 11 7 3.0073 1.6089 -7.2749 12 14 3.9358 -0.5904 -8.6809 13 1 3.0133 -1.7115 -8.9927 14 1 3.9998 0.3348 -9.8408 15 1 5.2914 -1.1281 -8.4007 16 6 2.0324 -0.7104 1.2305 17 6 2.5557 0.0174 2.2853 18 9 2.6172 1.3650 2.2118 19 6 3.0165 -0.6363 3.4156 20 6 2.9538 -2.0150 3.4911 21 6 2.4315 -2.7427 2.4385 22 6 1.9704 -2.0910 1.3070 23 9 1.4603 -2.8026 0.2781 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 2.9173 -1.1205 -1.0287 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1183 30 1 3.5905 -0.9273 -3.3690 31 1 1.9185 -1.3567 -3.8029 32 1 1.6659 0.8142 -4.9750 33 1 3.3379 1.2430 -4.5407 34 1 3.1093 2.0712 -8.1214 35 1 3.4252 -0.0688 4.2385 36 1 3.3175 -2.5243 4.3712 37 1 2.3833 -3.8198 2.4984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264878454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:20 Heat of formation + Delta-G solvation = -98.983069 kcal Electronic energy + Delta-G solvation = -20025.520403 eV Core-core repulsion = 16630.292406 eV Total energy + Delta-G solvation = -3395.227996 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.07835 -49.82566 -40.10299 -38.12849 -35.88584 -34.08609 -31.78691 -31.22947 -30.07486 -27.88365 -25.21629 -24.14189 -23.62197 -22.04452 -21.57934 -19.08792 -18.54278 -18.25615 -17.43691 -17.05064 -16.56125 -16.54422 -16.45122 -16.22646 -15.56612 -15.53581 -15.31487 -14.83597 -14.40630 -13.82890 -13.68110 -13.60775 -13.50369 -13.07270 -12.92863 -12.86122 -12.76586 -12.56980 -12.45712 -12.25805 -11.87239 -11.54056 -11.40226 -11.13964 -10.56287 -9.91369 -9.71778 -9.50525 -8.21126 -6.32643 -0.04489 0.00650 1.39140 1.42941 1.50879 2.38149 2.40697 2.91188 3.02877 3.11733 3.36072 3.46734 3.80794 3.89926 4.16614 4.18004 4.22120 4.27239 4.42115 4.62279 4.68305 4.77093 4.86158 4.88701 4.95455 5.01773 5.07785 5.12400 5.18227 5.22193 5.24538 5.49533 5.71623 5.79687 5.83464 5.95535 6.24562 6.31478 6.83643 7.36555 8.90792 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.003462 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.348769 B = 8085.535027 C = 8412.606932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.123 3.877 3 H 0.048 0.952 4 N -0.675 5.675 5 C 0.073 3.927 6 C -0.090 4.090 7 C 0.026 3.974 8 C -0.545 4.545 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.181 4.181 17 C 0.113 3.887 18 F -0.142 7.142 19 C -0.160 4.160 20 C -0.048 4.048 21 C -0.163 4.163 22 C 0.129 3.871 23 F -0.128 7.128 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.340 0.660 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.053 0.947 32 H -0.008 1.008 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -7.515 26.170 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.014 3.986 3 H 0.066 0.934 4 N -0.306 5.306 5 C -0.056 4.056 6 C -0.128 4.128 7 C -0.011 4.011 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.792 3.208 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.183 4.183 17 C 0.093 3.907 18 F -0.121 7.121 19 C -0.179 4.179 20 C -0.066 4.066 21 C -0.182 4.182 22 C 0.110 3.890 23 F -0.107 7.107 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.184 0.816 36 H 0.201 0.799 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.632 -7.585 25.831 26.971 hybrid contribution 0.831 0.838 -1.247 1.716 sum -0.801 -6.747 24.584 25.506 Atomic orbital electron populations 1.21733 0.92742 1.02504 1.01862 1.20321 0.97002 0.95140 0.86182 0.93357 1.60656 1.33367 1.32992 1.03634 1.21900 1.00034 0.93377 0.90274 1.21353 0.99653 0.98309 0.93477 1.18958 0.94877 0.94373 0.92935 1.21666 1.44009 0.96860 0.95792 0.92232 1.26017 0.95612 0.95803 1.02497 1.70094 1.49757 1.10718 1.26875 0.85466 0.79223 0.78336 0.77819 1.19139 1.20678 1.19077 1.20020 1.06707 0.93748 0.97808 1.17538 1.00750 0.76790 0.95625 1.91491 1.94285 1.29721 1.96567 1.21543 1.02682 0.96312 0.97337 1.21335 0.94390 0.92119 0.98715 1.21622 1.01466 1.02844 0.92270 1.17489 0.97342 0.87938 0.86268 1.91575 1.84231 1.77516 1.57340 0.92119 0.91255 0.92575 0.84191 0.91670 0.96045 0.93251 0.92795 0.98983 0.99136 0.92714 0.81570 0.79873 0.81758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.35 71.98 0.67 -2.73 16 2 C 0.12 3.43 2.60 44.17 0.12 3.54 16 3 H 0.05 1.44 6.93 -2.39 -0.02 1.42 16 4 N -0.68 -21.55 5.02 -495.43 -2.49 -24.04 16 5 C 0.07 2.73 5.48 86.30 0.47 3.20 16 6 C -0.09 -3.97 5.41 30.60 0.17 -3.80 16 7 C 0.03 1.45 4.97 29.85 0.15 1.60 16 8 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 10 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 11 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 12 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.18 -4.26 4.68 -19.78 -0.09 -4.35 16 17 C 0.11 2.33 7.24 22.37 0.16 2.49 16 18 F -0.14 -3.37 16.27 44.97 0.73 -2.64 16 19 C -0.16 -2.10 10.02 22.32 0.22 -1.88 16 20 C -0.05 -0.46 10.04 22.26 0.22 -0.23 16 21 C -0.16 -2.27 10.03 22.32 0.22 -2.05 16 22 C 0.13 2.80 6.79 22.37 0.15 2.95 16 23 F -0.13 -3.40 15.27 44.97 0.69 -2.72 16 24 H 0.06 1.62 7.64 -2.38 -0.02 1.60 16 25 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.06 1.54 7.45 -2.39 -0.02 1.52 16 27 H 0.34 10.52 8.06 -89.70 -0.72 9.80 16 28 H 0.06 2.48 7.44 -2.39 -0.02 2.46 16 29 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.90 318.40 4.75 -64.15 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.35 Total: 8.93 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.16 Total: -32.96 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.20 Total: -82.17 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.42 Total: -5.35 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.90 4.75 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264878454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.832 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds