Wall clock time and date at job start Mon Mar 30 2020 01:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.46897 * 111.00355 * 84.99974 * 13 2 1 15 15 H 1.09000 * 109.46539 * 325.00433 * 14 13 2 16 16 C 1.53005 * 109.46870 * 84.99686 * 14 13 2 17 17 C 1.50690 * 109.47634 * 205.00295 * 14 13 2 18 18 C 1.38239 * 119.98667 * 339.99791 * 17 14 13 19 19 C 1.38187 * 120.05074 * 179.97438 * 18 17 14 20 20 C 1.38491 * 120.02529 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.01460 * 179.97438 * 20 19 18 22 22 C 1.38399 * 119.97744 * 0.02562 * 20 19 18 23 23 C 1.38443 * 119.94723 * 359.76674 * 22 20 19 24 24 F 1.35097 * 120.01433 * 180.23326 * 23 22 20 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 29 29 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 30 30 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00393 * 208.95929 * 13 2 1 32 32 H 1.08998 * 109.46575 * 180.02562 * 16 14 13 33 33 H 1.08988 * 109.47163 * 300.00387 * 16 14 13 34 34 H 1.09004 * 109.46437 * 60.00960 * 16 14 13 35 35 H 1.07998 * 119.96944 * 359.97438 * 18 17 14 36 36 H 1.07999 * 119.98357 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.02710 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 3.5763 -1.8378 3.2996 9 14 6.0920 -1.0612 2.4370 10 1 6.5835 -0.2899 1.2671 11 1 6.4860 -0.3659 3.6886 12 1 6.6862 -2.4220 2.4185 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3469 15 1 1.2577 0.9328 -2.2906 16 6 3.4112 0.9809 -2.3222 17 6 1.9788 -0.5676 -3.6258 18 6 2.2603 -1.9211 -3.6266 19 6 2.1650 -2.6470 -4.7985 20 6 1.7867 -2.0194 -5.9737 21 9 1.6941 -2.7292 -7.1194 22 6 1.5046 -0.6644 -5.9742 23 6 1.5963 0.0610 -4.7986 24 9 1.3166 1.3827 -4.7966 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0607 -2.2445 4.0350 31 1 2.9173 -1.1206 -1.0287 32 1 3.4576 1.6601 -3.1734 33 1 3.4863 1.5524 -1.3973 34 1 4.2361 0.2704 -2.3785 35 1 2.5549 -2.4113 -2.7105 36 1 2.3855 -3.7042 -4.7980 37 1 1.2100 -0.1741 -6.8902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276314692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:49 Heat of formation + Delta-G solvation = -82.326397 kcal Electronic energy + Delta-G solvation = -20498.839149 eV Core-core repulsion = 17104.333440 eV Total energy + Delta-G solvation = -3394.505709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03978 -48.98354 -39.21480 -36.95802 -33.63974 -32.09815 -30.82961 -29.31071 -27.63560 -27.44070 -23.78198 -23.23876 -22.78500 -20.60209 -19.54169 -18.17843 -17.12286 -16.41269 -16.14460 -15.94752 -15.61918 -15.30948 -14.92140 -14.58421 -14.42216 -14.14449 -13.77855 -13.13750 -12.84981 -12.76035 -12.47382 -12.09940 -11.84527 -11.63659 -11.59041 -11.33805 -11.27105 -11.04298 -10.75971 -10.66563 -10.48039 -10.29636 -9.31699 -9.10340 -9.05164 -8.56850 -8.44277 -7.79071 -6.07406 -4.10842 0.96155 1.03841 3.25197 3.33946 3.35827 3.39191 3.84971 4.38836 4.39400 4.47888 4.65809 4.86662 4.96187 5.23464 5.31354 5.41124 5.51407 5.70828 5.81399 5.89982 5.92163 6.00057 6.05401 6.12546 6.19300 6.28918 6.34207 6.45794 6.55545 6.78486 6.88286 6.89584 7.44511 7.58954 7.91423 7.96082 8.14929 8.31621 8.95820 9.53971 11.03406 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.004738 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.623205 B = 5908.320316 C = 6273.642209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.033 0.967 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.676 5.676 14 C 0.121 3.879 15 H 0.086 0.914 16 C -0.175 4.175 17 C -0.102 4.102 18 C -0.037 4.037 19 C -0.164 4.164 20 C 0.115 3.885 21 F -0.138 7.138 22 C -0.196 4.196 23 C 0.124 3.876 24 F -0.133 7.133 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.260 0.740 31 H 0.357 0.643 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 1.726 -15.848 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.309 5.309 14 C 0.010 3.990 15 H 0.104 0.896 16 C -0.234 4.234 17 C -0.104 4.104 18 C -0.055 4.055 19 C -0.183 4.183 20 C 0.095 3.905 21 F -0.117 7.117 22 C -0.216 4.216 23 C 0.105 3.895 24 F -0.111 7.111 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.179 0.821 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.158 0.842 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.981 1.401 -15.868 16.420 hybrid contribution 1.730 0.704 0.083 1.870 sum -2.251 2.105 -15.785 16.083 Atomic orbital electron populations 1.21817 0.96669 1.01419 0.99542 1.21626 0.93284 0.96132 0.91009 0.94905 1.19285 0.95469 0.96205 0.90748 1.21213 0.92149 1.34476 1.08432 0.92810 1.24980 0.98152 0.95184 0.95708 1.69968 1.35408 1.35566 1.11921 0.86610 0.86049 0.77793 0.77976 1.19830 1.21079 1.20972 1.60662 1.34744 1.31328 1.04215 1.20317 0.97595 0.92629 0.88432 0.89633 1.22450 0.97646 1.00908 1.02375 1.20159 1.00681 0.95339 0.94185 1.20935 0.94386 0.92263 0.97949 1.21275 1.03936 1.01611 0.91492 1.17295 1.01791 0.89063 0.82329 1.91501 1.93883 1.78144 1.48134 1.20884 1.08240 0.93545 0.98923 1.17149 1.00805 0.78025 0.93564 1.91498 1.91086 1.31379 1.97144 0.92583 0.93225 0.94535 0.95993 0.95551 0.92982 0.82114 0.92782 0.91335 0.92081 0.82756 0.84205 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.40 37.16 0.35 -2.01 16 2 C 0.09 1.72 2.40 -67.71 -0.16 1.56 16 3 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 4 C 0.02 0.49 4.57 -27.88 -0.13 0.36 16 5 C -0.52 -13.63 8.12 -34.44 -0.28 -13.91 16 6 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -11.74 4.89 -100.96 -0.49 -12.23 16 14 C 0.12 1.83 2.34 -68.87 -0.16 1.67 16 15 H 0.09 1.33 6.91 -51.93 -0.36 0.97 16 16 C -0.17 -2.57 9.13 37.16 0.34 -2.23 16 17 C -0.10 -1.41 5.09 -104.55 -0.53 -1.94 16 18 C -0.04 -0.48 9.32 -39.60 -0.37 -0.85 16 19 C -0.16 -1.90 10.02 -39.51 -0.40 -2.30 16 20 C 0.11 1.37 7.30 -39.43 -0.29 1.08 16 21 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 22 C -0.20 -2.31 10.01 -39.45 -0.39 -2.71 16 23 C 0.12 1.63 7.24 -39.43 -0.29 1.35 16 24 F -0.13 -1.79 16.66 2.25 0.04 -1.75 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.36 6.65 6.48 -39.29 -0.25 6.39 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.09 7.42 -51.94 -0.39 0.70 16 34 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 35 H 0.15 2.02 6.83 -52.49 -0.36 1.67 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -27.37 316.30 -7.36 -34.73 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.02 Total: 3.67 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.41 Total: -18.36 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.24 Total: -37.14 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.37 -7.36 -34.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276314692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.595 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds