Wall clock time and date at job start Mon Mar 30 2020 01:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.46897 * 111.00355 * 84.99974 * 13 2 1 15 15 H 1.09000 * 109.46539 * 325.00433 * 14 13 2 16 16 C 1.53005 * 109.46870 * 84.99686 * 14 13 2 17 17 C 1.50690 * 109.47634 * 205.00295 * 14 13 2 18 18 C 1.38239 * 119.98667 * 339.99791 * 17 14 13 19 19 C 1.38187 * 120.05074 * 179.97438 * 18 17 14 20 20 C 1.38491 * 120.02529 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.01460 * 179.97438 * 20 19 18 22 22 C 1.38399 * 119.97744 * 0.02562 * 20 19 18 23 23 C 1.38443 * 119.94723 * 359.76674 * 22 20 19 24 24 F 1.35097 * 120.01433 * 180.23326 * 23 22 20 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 29 29 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 30 30 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00393 * 208.95929 * 13 2 1 32 32 H 1.08998 * 109.46575 * 180.02562 * 16 14 13 33 33 H 1.08988 * 109.47163 * 300.00387 * 16 14 13 34 34 H 1.09004 * 109.46437 * 60.00960 * 16 14 13 35 35 H 1.07998 * 119.96944 * 359.97438 * 18 17 14 36 36 H 1.07999 * 119.98357 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.02710 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 3.5763 -1.8378 3.2996 9 14 6.0920 -1.0612 2.4370 10 1 6.5835 -0.2899 1.2671 11 1 6.4860 -0.3659 3.6886 12 1 6.6862 -2.4220 2.4185 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3469 15 1 1.2577 0.9328 -2.2906 16 6 3.4112 0.9809 -2.3222 17 6 1.9788 -0.5676 -3.6258 18 6 2.2603 -1.9211 -3.6266 19 6 2.1650 -2.6470 -4.7985 20 6 1.7867 -2.0194 -5.9737 21 9 1.6941 -2.7292 -7.1194 22 6 1.5046 -0.6644 -5.9742 23 6 1.5963 0.0610 -4.7986 24 9 1.3166 1.3827 -4.7966 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0607 -2.2445 4.0350 31 1 2.9173 -1.1206 -1.0287 32 1 3.4576 1.6601 -3.1734 33 1 3.4863 1.5524 -1.3973 34 1 4.2361 0.2704 -2.3785 35 1 2.5549 -2.4113 -2.7105 36 1 2.3855 -3.7042 -4.7980 37 1 1.2100 -0.1741 -6.8902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276314692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:49 Heat of formation + Delta-G solvation = -96.014545 kcal Electronic energy + Delta-G solvation = -20499.432711 eV Core-core repulsion = 17104.333440 eV Total energy + Delta-G solvation = -3395.099271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00261 -49.96854 -40.29146 -38.33355 -35.31226 -33.82674 -31.78849 -30.47695 -29.34550 -28.89946 -25.24086 -24.60379 -23.96396 -21.79960 -21.07280 -19.16998 -18.46288 -18.14011 -17.29323 -16.93640 -16.77247 -16.37550 -16.27532 -16.24699 -15.46961 -15.42903 -14.90619 -14.60382 -14.26282 -13.95602 -13.63443 -13.53973 -13.39467 -13.25517 -12.94392 -12.69076 -12.62015 -12.49427 -12.34957 -12.17023 -12.08898 -11.83076 -11.22812 -10.96311 -10.55001 -10.00776 -9.58849 -9.20438 -8.15988 -6.25576 -0.02297 0.07983 1.40854 1.43149 1.53584 2.41081 2.42585 2.88220 3.13070 3.27612 3.45367 3.69224 3.78479 3.96802 4.15649 4.22544 4.36086 4.39805 4.58210 4.63879 4.73368 4.81756 4.87007 4.95017 4.99509 5.06393 5.17246 5.21922 5.25743 5.33804 5.38328 5.54811 5.61167 5.81641 5.88760 6.24539 6.38604 6.63697 6.90433 7.43452 8.95788 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.004738 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.623205 B = 5908.320316 C = 6273.642209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 H 0.029 0.971 4 C 0.028 3.972 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.955 3.045 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.672 5.672 14 C 0.125 3.875 15 H 0.084 0.916 16 C -0.170 4.170 17 C -0.112 4.112 18 C -0.045 4.045 19 C -0.157 4.157 20 C 0.113 3.887 21 F -0.137 7.137 22 C -0.189 4.189 23 C 0.118 3.882 24 F -0.136 7.136 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.056 0.944 28 H -0.007 1.007 29 H 0.000 1.000 30 H 0.261 0.739 31 H 0.349 0.651 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 1.992 -17.781 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.011 4.011 3 H 0.047 0.953 4 C -0.010 4.010 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.305 5.305 14 C 0.015 3.985 15 H 0.102 0.898 16 C -0.229 4.229 17 C -0.114 4.114 18 C -0.063 4.063 19 C -0.175 4.175 20 C 0.094 3.906 21 F -0.115 7.115 22 C -0.208 4.208 23 C 0.098 3.902 24 F -0.115 7.115 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.012 0.988 29 H 0.019 0.981 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.441 1.679 -17.825 18.232 hybrid contribution 1.520 0.606 0.634 1.755 sum -1.921 2.285 -17.191 17.449 Atomic orbital electron populations 1.21734 0.94836 1.01481 1.00689 1.21400 0.94719 0.95164 0.89860 0.95279 1.19133 0.94893 0.94862 0.92069 1.21564 0.93118 1.33654 1.08258 0.91975 1.25828 1.02869 0.94996 0.95483 1.70100 1.37316 1.36923 1.12766 0.85542 0.80405 0.77841 0.78100 1.18547 1.21166 1.20642 1.60659 1.34208 1.31683 1.03953 1.20279 0.97740 0.92379 0.88131 0.89845 1.22383 0.97355 1.00902 1.02222 1.20036 1.01949 0.95645 0.93735 1.20908 0.94960 0.92073 0.98351 1.21445 1.02739 1.02532 0.90805 1.17354 1.01660 0.89183 0.82401 1.91510 1.93852 1.78115 1.48052 1.21058 1.07105 0.93477 0.99199 1.17165 1.01318 0.77995 0.93732 1.91490 1.91191 1.31605 1.97169 0.93054 0.92946 0.92494 0.98827 0.98142 0.92987 0.83014 0.91287 0.92795 0.92204 0.83323 0.82210 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.40 71.98 0.68 -3.71 16 2 C 0.10 3.81 2.40 44.92 0.11 3.92 16 3 H 0.03 1.16 7.11 -2.39 -0.02 1.14 16 4 C 0.03 1.38 4.57 29.85 0.14 1.52 16 5 C -0.53 -27.67 8.12 25.60 0.21 -27.46 16 6 H 0.06 3.09 7.49 -2.91 -0.02 3.07 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -54.70 13.29 21.44 0.28 -54.41 16 9 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.67 -23.10 4.89 -473.32 -2.32 -25.41 16 14 C 0.13 3.64 2.34 44.17 0.10 3.74 16 15 H 0.08 2.47 6.91 -2.39 -0.02 2.45 16 16 C -0.17 -4.80 9.13 71.98 0.66 -4.14 16 17 C -0.11 -2.92 5.09 -19.82 -0.10 -3.02 16 18 C -0.04 -1.09 9.32 22.26 0.21 -0.88 16 19 C -0.16 -3.27 10.02 22.32 0.22 -3.05 16 20 C 0.11 2.41 7.30 22.37 0.16 2.57 16 21 F -0.14 -2.91 17.27 44.97 0.78 -2.14 16 22 C -0.19 -3.96 10.01 22.36 0.22 -3.74 16 23 C 0.12 2.84 7.24 22.37 0.16 3.01 16 24 F -0.14 -3.40 16.66 44.97 0.75 -2.65 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.69 7.43 -2.39 -0.02 1.67 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.35 12.97 6.48 -89.70 -0.58 12.39 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.66 7.42 -2.39 -0.02 1.65 16 34 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 35 H 0.15 3.79 6.83 -2.91 -0.02 3.77 16 36 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -57.97 316.30 5.25 -52.72 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.49 Total: 17.77 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.23 Total: -30.43 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.03 Total: -79.82 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.53 Total: -4.79 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -57.97 5.25 -52.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276314692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.290 kcal (2) G-P(sol) polarization free energy of solvation -57.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds