Wall clock time and date at job start Mon Mar 30 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47179 * 2 1 4 4 C 1.52992 * 109.46965 * 240.00190 * 2 1 3 5 5 C 1.50702 * 109.47137 * 173.91601 * 4 2 1 6 6 H 1.07993 * 120.00328 * 2.49491 * 5 4 2 7 7 C 1.37882 * 119.99777 * 182.49984 * 5 4 2 8 8 N 1.31514 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46757 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47232 * 119.99639 * 9 7 5 12 12 H 1.48500 * 109.46796 * 239.99916 * 9 7 5 13 13 N 1.46904 * 109.47155 * 120.00185 * 2 1 3 14 14 C 1.46897 * 110.99794 * 278.07583 * 13 2 1 15 15 H 1.08998 * 109.47134 * 32.73813 * 14 13 2 16 16 C 1.53005 * 109.46949 * 152.73928 * 14 13 2 17 17 C 1.50702 * 109.47301 * 272.73828 * 14 13 2 18 18 C 1.38229 * 119.98525 * 331.89324 * 17 14 13 19 19 C 1.38186 * 120.05130 * 180.02562 * 18 17 14 20 20 C 1.38497 * 120.02537 * 0.02562 * 19 18 17 21 21 F 1.35094 * 120.01622 * 180.02562 * 20 19 18 22 22 C 1.38403 * 119.97113 * 359.97438 * 20 19 18 23 23 C 1.38436 * 119.95198 * 0.02562 * 22 20 19 24 24 F 1.35103 * 120.01500 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47106 * 185.00868 * 1 2 3 26 26 H 1.09003 * 109.46637 * 305.00242 * 1 2 3 27 27 H 1.08998 * 109.46952 * 65.00347 * 1 2 3 28 28 H 1.09007 * 109.47662 * 293.91349 * 4 2 1 29 29 H 1.08997 * 109.47507 * 53.91374 * 4 2 1 30 30 H 0.97005 * 119.99635 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99565 * 154.12295 * 13 2 1 32 32 H 1.09005 * 109.46909 * 304.91469 * 16 14 13 33 33 H 1.08995 * 109.46997 * 64.91711 * 16 14 13 34 34 H 1.09000 * 109.47322 * 184.92015 * 16 14 13 35 35 H 1.08001 * 119.97290 * 0.02562 * 18 17 14 36 36 H 1.07999 * 119.99134 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.02422 * 179.72295 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5394 -0.5921 -1.3269 6 1 4.0792 -0.0848 -0.5410 7 6 4.2222 -1.1217 -2.4013 8 7 3.5650 -1.7399 -3.3581 9 14 6.0810 -0.9624 -2.4972 10 1 6.5771 -0.2297 -1.3046 11 1 6.6924 -2.3151 -2.5375 12 1 6.4509 -0.2152 -3.7261 13 7 2.0197 -0.6926 1.1994 14 6 2.0135 0.2031 2.3638 15 1 1.1832 0.9040 2.2786 16 6 1.8545 -0.6231 3.6418 17 6 3.3118 0.9664 2.4173 18 6 4.4606 0.4139 1.8828 19 6 5.6519 1.1124 1.9317 20 6 5.6963 2.3669 2.5169 21 9 6.8609 3.0498 2.5640 22 6 4.5466 2.9210 3.0524 23 6 3.3537 2.2203 3.0028 24 9 2.2308 2.7598 3.5256 25 1 -0.3633 -1.0237 0.0897 26 1 -0.3633 0.5895 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.7683 -1.7756 -1.1965 29 1 1.5904 -0.2741 -2.1358 30 1 4.0454 -2.1122 -4.1142 31 1 2.9393 -1.0777 1.0444 32 1 0.9600 -1.2414 3.5658 33 1 2.7279 -1.2619 3.7724 34 1 1.7622 0.0457 4.4976 35 1 4.4271 -0.5645 1.4267 36 1 6.5488 0.6799 1.5134 37 1 4.5811 3.8973 3.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276314695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:53 Heat of formation + Delta-G solvation = -78.240777 kcal Electronic energy + Delta-G solvation = -21064.093098 eV Core-core repulsion = 17669.764555 eV Total energy + Delta-G solvation = -3394.328543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.95284 -48.93218 -39.35161 -36.71844 -33.66136 -32.08754 -30.78901 -29.16308 -27.92922 -27.41165 -23.66259 -23.26062 -22.71485 -20.43686 -19.50469 -18.23899 -17.09973 -16.43453 -16.21025 -15.88546 -15.64108 -15.24767 -14.80967 -14.66512 -14.36329 -14.22789 -13.47425 -13.32492 -12.84203 -12.55863 -12.33528 -12.15402 -11.84693 -11.68242 -11.50467 -11.33531 -11.11871 -11.03837 -10.73379 -10.63791 -10.50259 -10.28338 -9.29939 -9.12354 -8.91120 -8.50399 -8.43617 -7.85104 -6.07383 -4.10623 1.02925 1.09396 3.24009 3.32439 3.33291 3.44817 3.91673 4.37646 4.46019 4.61662 4.71736 4.76720 4.97332 5.26716 5.30326 5.44588 5.62118 5.79740 5.88671 5.90318 5.96316 6.02094 6.09826 6.15283 6.17579 6.29356 6.36511 6.43720 6.55680 6.84308 6.89484 6.90467 7.45857 7.60035 7.91513 7.96945 8.14733 8.32014 8.95874 9.53738 11.03610 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.008241 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.798757 B = 3396.959325 C = 4909.545439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.030 0.970 4 C 0.020 3.980 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.671 5.671 14 C 0.121 3.879 15 H 0.085 0.915 16 C -0.132 4.132 17 C -0.145 4.145 18 C -0.049 4.049 19 C -0.154 4.154 20 C 0.119 3.881 21 F -0.136 7.136 22 C -0.195 4.195 23 C 0.128 3.872 24 F -0.132 7.132 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.353 0.647 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 5.596 13.161 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.048 0.952 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.306 5.306 14 C 0.010 3.990 15 H 0.103 0.897 16 C -0.190 4.190 17 C -0.148 4.148 18 C -0.067 4.067 19 C -0.173 4.173 20 C 0.099 3.901 21 F -0.115 7.115 22 C -0.215 4.215 23 C 0.108 3.892 24 F -0.111 7.111 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.311 5.244 13.138 14.149 hybrid contribution 1.956 1.040 -0.413 2.253 sum 1.645 6.283 12.725 14.287 Atomic orbital electron populations 1.21825 0.96571 1.01357 0.99730 1.21674 0.93436 0.96027 0.91269 0.95214 1.19276 0.95555 0.96132 0.90742 1.21308 0.92389 1.36221 1.06594 0.92401 1.24978 0.98000 0.95206 0.95780 1.69966 1.35400 1.37211 1.10197 0.86686 0.86211 0.77818 0.78232 1.19601 1.20933 1.21055 1.60852 1.32822 1.33551 1.03421 1.20588 0.91767 0.93298 0.93367 0.89686 1.21740 1.02634 0.99592 0.95019 1.21023 0.99209 0.94341 1.00228 1.20959 0.90118 1.00827 0.94836 1.21228 1.00391 0.93863 1.01783 1.17283 0.81243 0.91235 1.00328 1.91501 1.46087 1.79352 1.94555 1.20903 0.91296 1.02549 1.06727 1.17100 0.82086 0.92225 0.97776 1.91490 1.49625 1.85787 1.84179 0.92448 0.94559 0.93110 0.95666 0.95818 0.92990 0.82213 0.91275 0.92613 0.93016 0.82850 0.84087 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.33 37.16 0.35 -2.05 16 2 C 0.09 1.70 2.42 -67.71 -0.16 1.54 16 3 H 0.03 0.63 7.75 -51.93 -0.40 0.23 16 4 C 0.02 0.50 4.58 -27.89 -0.13 0.37 16 5 C -0.53 -13.61 8.19 -34.44 -0.28 -13.89 16 6 H 0.06 1.40 5.27 -52.49 -0.28 1.13 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.67 -11.99 5.99 -100.95 -0.60 -12.60 16 14 C 0.12 1.85 2.45 -68.86 -0.17 1.68 16 15 H 0.09 1.33 6.49 -51.93 -0.34 1.00 16 16 C -0.13 -1.71 9.50 37.16 0.35 -1.36 16 17 C -0.15 -2.23 4.81 -104.55 -0.50 -2.73 16 18 C -0.05 -0.77 7.94 -39.60 -0.31 -1.08 16 19 C -0.15 -2.30 10.03 -39.51 -0.40 -2.70 16 20 C 0.12 1.71 7.30 -39.43 -0.29 1.42 16 21 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 22 C -0.20 -2.66 10.01 -39.45 -0.39 -3.05 16 23 C 0.13 1.87 7.24 -39.43 -0.29 1.58 16 24 F -0.13 -1.90 16.51 2.25 0.04 -1.86 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.56 7.31 -51.93 -0.38 0.18 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.02 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.35 6.63 4.49 -39.29 -0.18 6.46 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.15 2.50 5.23 -52.49 -0.27 2.22 16 36 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -27.50 311.11 -7.23 -34.73 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.79 Total: 5.05 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.32 Total: -18.68 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.13 Total: -37.53 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.50 -7.23 -34.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276314695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.507 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds