Wall clock time and date at job start Mon Mar 30 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47179 * 2 1 4 4 C 1.52992 * 109.46965 * 240.00190 * 2 1 3 5 5 C 1.50702 * 109.47137 * 173.91601 * 4 2 1 6 6 H 1.07993 * 120.00328 * 2.49491 * 5 4 2 7 7 C 1.37882 * 119.99777 * 182.49984 * 5 4 2 8 8 N 1.31514 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46757 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47232 * 119.99639 * 9 7 5 12 12 H 1.48500 * 109.46796 * 239.99916 * 9 7 5 13 13 N 1.46904 * 109.47155 * 120.00185 * 2 1 3 14 14 C 1.46897 * 110.99794 * 278.07583 * 13 2 1 15 15 H 1.08998 * 109.47134 * 32.73813 * 14 13 2 16 16 C 1.53005 * 109.46949 * 152.73928 * 14 13 2 17 17 C 1.50702 * 109.47301 * 272.73828 * 14 13 2 18 18 C 1.38229 * 119.98525 * 331.89324 * 17 14 13 19 19 C 1.38186 * 120.05130 * 180.02562 * 18 17 14 20 20 C 1.38497 * 120.02537 * 0.02562 * 19 18 17 21 21 F 1.35094 * 120.01622 * 180.02562 * 20 19 18 22 22 C 1.38403 * 119.97113 * 359.97438 * 20 19 18 23 23 C 1.38436 * 119.95198 * 0.02562 * 22 20 19 24 24 F 1.35103 * 120.01500 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47106 * 185.00868 * 1 2 3 26 26 H 1.09003 * 109.46637 * 305.00242 * 1 2 3 27 27 H 1.08998 * 109.46952 * 65.00347 * 1 2 3 28 28 H 1.09007 * 109.47662 * 293.91349 * 4 2 1 29 29 H 1.08997 * 109.47507 * 53.91374 * 4 2 1 30 30 H 0.97005 * 119.99635 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99565 * 154.12295 * 13 2 1 32 32 H 1.09005 * 109.46909 * 304.91469 * 16 14 13 33 33 H 1.08995 * 109.46997 * 64.91711 * 16 14 13 34 34 H 1.09000 * 109.47322 * 184.92015 * 16 14 13 35 35 H 1.08001 * 119.97290 * 0.02562 * 18 17 14 36 36 H 1.07999 * 119.99134 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.02422 * 179.72295 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5394 -0.5921 -1.3269 6 1 4.0792 -0.0848 -0.5410 7 6 4.2222 -1.1217 -2.4013 8 7 3.5650 -1.7399 -3.3581 9 14 6.0810 -0.9624 -2.4972 10 1 6.5771 -0.2297 -1.3046 11 1 6.6924 -2.3151 -2.5375 12 1 6.4509 -0.2152 -3.7261 13 7 2.0197 -0.6926 1.1994 14 6 2.0135 0.2031 2.3638 15 1 1.1832 0.9040 2.2786 16 6 1.8545 -0.6231 3.6418 17 6 3.3118 0.9664 2.4173 18 6 4.4606 0.4139 1.8828 19 6 5.6519 1.1124 1.9317 20 6 5.6963 2.3669 2.5169 21 9 6.8609 3.0498 2.5640 22 6 4.5466 2.9210 3.0524 23 6 3.3537 2.2203 3.0028 24 9 2.2308 2.7598 3.5256 25 1 -0.3633 -1.0237 0.0897 26 1 -0.3633 0.5895 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.7683 -1.7756 -1.1965 29 1 1.5904 -0.2741 -2.1358 30 1 4.0454 -2.1122 -4.1142 31 1 2.9393 -1.0777 1.0444 32 1 0.9600 -1.2414 3.5658 33 1 2.7279 -1.2619 3.7724 34 1 1.7622 0.0457 4.4976 35 1 4.4271 -0.5645 1.4267 36 1 6.5488 0.6799 1.5134 37 1 4.5811 3.8973 3.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276314695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:53 Heat of formation + Delta-G solvation = -92.570195 kcal Electronic energy + Delta-G solvation = -21064.714468 eV Core-core repulsion = 17669.764555 eV Total energy + Delta-G solvation = -3394.949913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.07034 -50.05005 -40.56516 -38.13277 -35.34115 -33.83638 -31.92691 -30.41460 -29.25662 -29.21666 -25.12363 -24.79077 -23.94919 -21.70281 -21.09277 -19.41279 -18.44116 -18.25912 -17.46156 -17.02375 -16.82710 -16.49193 -16.36750 -16.17085 -15.61999 -15.47248 -14.97682 -14.58684 -14.16420 -13.92614 -13.64860 -13.55782 -13.38581 -13.24439 -12.94906 -12.67427 -12.63937 -12.50175 -12.29873 -12.21187 -12.04295 -11.79980 -11.17645 -10.95493 -10.55107 -10.09855 -9.64495 -9.31284 -8.15432 -6.24509 -0.12241 -0.03970 1.39604 1.42132 1.51791 2.29636 2.42028 2.78990 3.14908 3.28996 3.43128 3.53017 3.58834 3.85996 4.11432 4.25604 4.34205 4.49801 4.62490 4.68483 4.69123 4.78971 4.85973 4.91128 4.97846 5.00313 5.10284 5.22361 5.24154 5.36107 5.38869 5.56235 5.60901 5.71390 5.88578 6.25598 6.36889 6.62982 6.91623 7.44164 8.96699 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.008241 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.798757 B = 3396.959325 C = 4909.545439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.096 3.904 3 H 0.020 0.980 4 C 0.026 3.974 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.946 3.054 10 H -0.250 1.250 11 H -0.281 1.281 12 H -0.289 1.289 13 N -0.672 5.672 14 C 0.122 3.878 15 H 0.084 0.916 16 C -0.126 4.126 17 C -0.151 4.151 18 C -0.063 4.063 19 C -0.159 4.159 20 C 0.116 3.884 21 F -0.135 7.135 22 C -0.185 4.185 23 C 0.125 3.875 24 F -0.130 7.130 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.049 0.951 28 H -0.001 1.001 29 H -0.007 1.007 30 H 0.260 0.740 31 H 0.347 0.653 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 6.734 14.975 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.013 4.013 3 H 0.038 0.962 4 C -0.011 4.011 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.771 3.229 10 H -0.173 1.173 11 H -0.207 1.207 12 H -0.216 1.216 13 N -0.306 5.306 14 C 0.011 3.989 15 H 0.102 0.898 16 C -0.184 4.184 17 C -0.154 4.154 18 C -0.081 4.081 19 C -0.178 4.178 20 C 0.096 3.904 21 F -0.114 7.114 22 C -0.205 4.205 23 C 0.105 3.895 24 F -0.108 7.108 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.069 0.931 31 H 0.171 0.829 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.413 6.394 14.984 16.296 hybrid contribution 1.699 0.710 -0.948 2.071 sum 2.112 7.103 14.036 15.872 Atomic orbital electron populations 1.21751 0.94580 1.01768 1.00762 1.21426 0.95003 0.94673 0.90240 0.96234 1.19142 0.95285 0.94745 0.91945 1.21726 0.93178 1.35196 1.06580 0.90818 1.25837 1.02704 0.95086 0.95604 1.70108 1.37322 1.38786 1.11052 0.85678 0.80683 0.77902 0.78619 1.17318 1.20705 1.21567 1.60876 1.32455 1.33986 1.03276 1.20658 0.91878 0.93244 0.93093 0.89777 1.21697 1.02880 0.99621 0.94157 1.21011 0.98966 0.94819 1.00606 1.20891 0.90720 1.00730 0.95757 1.21349 1.00421 0.94191 1.01804 1.17312 0.81559 0.91109 1.00402 1.91508 1.46051 1.79253 1.94547 1.21119 0.90452 1.03267 1.05624 1.17105 0.82524 0.92002 0.97909 1.91498 1.49540 1.85683 1.84116 0.92587 0.92172 0.93182 0.98287 0.98861 0.93113 0.82910 0.90981 0.92410 0.91416 0.83852 0.83327 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.33 71.98 0.67 -3.80 16 2 C 0.10 3.83 2.42 44.91 0.11 3.93 16 3 H 0.02 0.82 7.75 -2.39 -0.02 0.80 16 4 C 0.03 1.32 4.58 29.85 0.14 1.45 16 5 C -0.53 -27.51 8.19 25.60 0.21 -27.30 16 6 H 0.07 3.53 5.27 -2.91 -0.02 3.52 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 9 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 10 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.67 -23.51 5.99 -473.31 -2.84 -26.34 16 14 C 0.12 3.52 2.45 44.17 0.11 3.63 16 15 H 0.08 2.46 6.49 -2.39 -0.02 2.44 16 16 C -0.13 -2.98 9.50 71.98 0.68 -2.29 16 17 C -0.15 -4.37 4.81 -19.81 -0.10 -4.47 16 18 C -0.06 -1.88 7.94 22.26 0.18 -1.70 16 19 C -0.16 -4.45 10.03 22.32 0.22 -4.23 16 20 C 0.12 3.05 7.30 22.37 0.16 3.22 16 21 F -0.14 -3.53 17.27 44.97 0.78 -2.75 16 22 C -0.19 -4.51 10.01 22.36 0.22 -4.29 16 23 C 0.12 3.33 7.24 22.37 0.16 3.49 16 24 F -0.13 -3.37 16.51 44.97 0.74 -2.63 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.76 7.31 -2.39 -0.02 1.74 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 31 H 0.35 12.94 4.49 -89.70 -0.40 12.53 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.14 4.57 5.23 -2.91 -0.02 4.56 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -58.55 311.11 4.91 -53.64 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.68 Total: 20.46 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.23 Total: -31.59 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.55 Total: -81.20 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 1.52 Total: -5.38 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -58.55 4.91 -53.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276314695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.930 kcal (2) G-P(sol) polarization free energy of solvation -58.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds