Wall clock time and date at job start Mon Mar 30 2020 01:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46831 * 2 1 4 4 C 1.53001 * 109.46974 * 240.00411 * 2 1 3 5 5 C 1.50692 * 109.47123 * 175.00023 * 4 2 1 6 6 H 1.07997 * 120.00188 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00436 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99872 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47334 * 60.00027 * 9 7 5 11 11 H 1.48502 * 109.46923 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47083 * 299.99821 * 9 7 5 13 13 N 1.46893 * 109.47132 * 120.00414 * 2 1 3 14 14 C 1.46901 * 111.00360 * 58.94899 * 13 2 1 15 15 C 1.46906 * 110.99932 * 294.99616 * 13 2 1 16 16 C 1.50703 * 109.47109 * 190.00029 * 15 13 2 17 17 C 1.38249 * 119.96466 * 90.00204 * 16 15 13 18 18 C 1.38215 * 120.07460 * 179.97438 * 17 16 15 19 19 C 1.38417 * 119.99441 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.03227 * 179.97438 * 19 18 17 21 21 C 1.38644 * 119.92964 * 359.97438 * 19 18 17 22 22 F 1.35107 * 120.03465 * 180.02562 * 21 19 18 23 23 C 1.38216 * 119.96554 * 269.72481 * 16 15 13 24 24 H 1.09000 * 109.46938 * 59.99646 * 1 2 3 25 25 H 1.09002 * 109.47310 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46864 * 299.99705 * 1 2 3 27 27 H 1.09004 * 109.47028 * 295.00018 * 4 2 1 28 28 H 1.09007 * 109.47229 * 54.99685 * 4 2 1 29 29 H 0.96997 * 120.00792 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47046 * 296.04847 * 14 13 2 31 31 H 1.09008 * 109.46903 * 56.04730 * 14 13 2 32 32 H 1.08999 * 109.47457 * 176.04446 * 14 13 2 33 33 H 1.08992 * 109.47459 * 309.99948 * 15 13 2 34 34 H 1.09004 * 109.47040 * 70.00098 * 15 13 2 35 35 H 1.08009 * 119.96385 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.00302 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.99784 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3579 8 7 3.5764 -1.8385 -3.2992 9 14 6.0920 -1.0622 -2.4363 10 1 6.6838 -1.6883 -1.2266 11 1 6.5871 -1.7632 -3.6483 12 1 6.4854 0.3685 -2.4959 13 7 2.0197 -0.6925 1.1993 14 6 1.5283 -2.0761 1.2459 15 6 1.6488 0.0391 2.4180 16 6 2.3680 -0.5573 3.6005 17 6 3.6110 -0.0759 3.9673 18 6 4.2724 -0.6208 5.0517 19 6 3.6904 -1.6501 5.7714 20 9 4.3365 -2.1836 6.8312 21 6 2.4439 -2.1328 5.4035 22 9 1.8737 -3.1370 6.1048 23 6 1.7817 -1.5810 4.3206 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2616 -2.1371 29 1 4.0608 -2.2459 -4.0342 30 1 0.4419 -2.0731 1.3347 31 1 1.8166 -2.5951 0.3317 32 1 1.9617 -2.5870 2.1057 33 1 1.9298 1.0869 2.3126 34 1 0.5722 -0.0345 2.5726 35 1 4.0657 0.7269 3.4058 36 1 5.2432 -0.2436 5.3375 37 1 0.8088 -1.9535 4.0355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276340102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:34 Heat of formation + Delta-G solvation = -64.780607 kcal Electronic energy + Delta-G solvation = -20493.496156 eV Core-core repulsion = 17099.751289 eV Total energy + Delta-G solvation = -3393.744866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.47340 -48.55240 -39.45965 -37.49963 -33.19754 -31.85856 -30.82599 -29.66352 -27.54810 -26.69589 -24.31807 -23.24617 -22.87126 -21.21280 -18.81856 -17.91164 -17.13897 -16.93720 -16.35479 -16.19366 -15.62244 -14.97287 -14.85901 -14.52273 -14.42637 -14.11690 -13.96153 -13.52410 -12.98099 -12.84891 -12.31924 -12.14408 -11.86331 -11.68321 -11.51286 -11.40868 -11.25607 -10.94729 -10.71767 -10.63935 -10.45078 -9.99746 -9.24173 -9.09789 -9.03660 -8.63208 -8.27910 -7.58758 -5.91472 -3.89738 0.89575 0.97330 3.31335 3.39052 3.43353 3.46396 3.75738 4.28026 4.47431 4.53826 4.61480 4.76183 4.96719 5.09138 5.43495 5.47340 5.59562 5.68092 5.71375 5.78791 5.87696 5.90417 5.91295 5.98616 6.02599 6.09477 6.37579 6.45748 6.59958 6.69604 6.72517 6.90485 7.45881 7.59634 7.82478 7.93646 8.09110 8.53747 9.15903 9.72313 11.20382 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.005112 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.401749 B = 5475.943004 C = 6305.531127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.086 3.914 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.508 5.508 14 C 0.020 3.980 15 C 0.086 3.914 16 C -0.044 4.044 17 C -0.077 4.077 18 C -0.126 4.126 19 C 0.057 3.943 20 F -0.134 7.134 21 C 0.064 3.936 22 F -0.133 7.133 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.258 0.742 30 H 0.017 0.983 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 3.212 15.625 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.231 5.231 14 C -0.128 4.128 15 C -0.042 4.042 16 C -0.045 4.045 17 C -0.096 4.096 18 C -0.145 4.145 19 C 0.037 3.963 20 F -0.113 7.113 21 C 0.044 3.956 22 F -0.112 7.112 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.455 3.042 15.486 16.156 hybrid contribution 0.201 -0.401 0.247 0.512 sum -3.254 2.641 15.734 16.282 Atomic orbital electron populations 1.22541 0.99696 1.01436 1.00798 1.21969 0.90101 0.98490 0.91560 0.91023 1.19242 0.96431 0.95463 0.89750 1.21120 0.91726 1.33218 1.07058 0.92153 1.25001 0.98006 0.95825 0.95974 1.69944 1.35367 1.36736 1.12375 0.86704 0.86373 0.78004 0.77141 1.20363 1.21660 1.20474 1.62178 1.59039 1.01800 1.00049 1.22496 0.96279 0.90668 1.03390 1.21131 0.96312 0.98315 0.88453 1.19831 0.94702 0.94554 0.95407 1.21045 0.93661 0.99990 0.94888 1.21091 1.01292 0.95850 0.96221 1.17679 0.91581 0.97970 0.89068 1.91503 1.80791 1.85286 1.53715 1.17621 0.92417 0.90664 0.94946 1.91510 1.84287 1.57778 1.77615 1.21005 1.01402 0.97491 0.94183 0.92402 0.92807 0.94094 0.96084 0.96249 0.93224 0.96491 0.89538 0.92631 0.89712 0.94100 0.83884 0.83821 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 8.50 37.16 0.32 -2.62 16 2 C 0.09 1.63 2.29 -67.71 -0.16 1.47 16 3 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 4 C 0.03 0.68 4.27 -27.89 -0.12 0.56 16 5 C -0.49 -13.33 8.84 -34.44 -0.30 -13.63 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -8.82 4.46 -236.33 -1.05 -9.88 16 14 C 0.02 0.33 8.35 60.07 0.50 0.83 16 15 C 0.09 1.15 4.56 -4.97 -0.02 1.13 16 16 C -0.04 -0.56 4.87 -104.62 -0.51 -1.07 16 17 C -0.08 -0.92 9.70 -39.59 -0.38 -1.30 16 18 C -0.13 -1.44 10.02 -39.52 -0.40 -1.84 16 19 C 0.06 0.75 7.31 -39.37 -0.29 0.46 16 20 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 21 C 0.06 0.85 7.31 -39.37 -0.29 0.56 16 22 F -0.13 -1.87 17.18 2.25 0.04 -1.83 16 23 C -0.12 -1.51 7.96 -39.53 -0.31 -1.83 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.86 6.48 -51.93 -0.34 0.52 16 26 H 0.04 0.55 6.75 -51.93 -0.35 0.20 16 27 H 0.02 0.54 6.10 -51.93 -0.32 0.23 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.25 6.51 -51.93 -0.34 -0.08 16 31 H 0.09 1.73 6.03 -51.92 -0.31 1.41 16 32 H 0.05 0.88 6.18 -51.93 -0.32 0.56 16 33 H 0.08 1.06 7.94 -51.93 -0.41 0.65 16 34 H 0.04 0.51 6.88 -51.93 -0.36 0.15 16 35 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.14 1.58 8.04 -52.48 -0.42 1.16 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -29.43 309.78 -7.47 -36.90 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.82 Total: -2.79 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.06 Total: -15.92 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.32 Total: -35.88 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.43 -7.47 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.885 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds