Wall clock time and date at job start Mon Mar 30 2020 01:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46831 * 2 1 4 4 C 1.53001 * 109.46974 * 240.00411 * 2 1 3 5 5 C 1.50692 * 109.47123 * 175.00023 * 4 2 1 6 6 H 1.07997 * 120.00188 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00436 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99872 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47334 * 60.00027 * 9 7 5 11 11 H 1.48502 * 109.46923 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47083 * 299.99821 * 9 7 5 13 13 N 1.46893 * 109.47132 * 120.00414 * 2 1 3 14 14 C 1.46901 * 111.00360 * 58.94899 * 13 2 1 15 15 C 1.46906 * 110.99932 * 294.99616 * 13 2 1 16 16 C 1.50703 * 109.47109 * 190.00029 * 15 13 2 17 17 C 1.38249 * 119.96466 * 90.00204 * 16 15 13 18 18 C 1.38215 * 120.07460 * 179.97438 * 17 16 15 19 19 C 1.38417 * 119.99441 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.03227 * 179.97438 * 19 18 17 21 21 C 1.38644 * 119.92964 * 359.97438 * 19 18 17 22 22 F 1.35107 * 120.03465 * 180.02562 * 21 19 18 23 23 C 1.38216 * 119.96554 * 269.72481 * 16 15 13 24 24 H 1.09000 * 109.46938 * 59.99646 * 1 2 3 25 25 H 1.09002 * 109.47310 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46864 * 299.99705 * 1 2 3 27 27 H 1.09004 * 109.47028 * 295.00018 * 4 2 1 28 28 H 1.09007 * 109.47229 * 54.99685 * 4 2 1 29 29 H 0.96997 * 120.00792 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47046 * 296.04847 * 14 13 2 31 31 H 1.09008 * 109.46903 * 56.04730 * 14 13 2 32 32 H 1.08999 * 109.47457 * 176.04446 * 14 13 2 33 33 H 1.08992 * 109.47459 * 309.99948 * 15 13 2 34 34 H 1.09004 * 109.47040 * 70.00098 * 15 13 2 35 35 H 1.08009 * 119.96385 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.00302 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.99784 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3579 8 7 3.5764 -1.8385 -3.2992 9 14 6.0920 -1.0622 -2.4363 10 1 6.6838 -1.6883 -1.2266 11 1 6.5871 -1.7632 -3.6483 12 1 6.4854 0.3685 -2.4959 13 7 2.0197 -0.6925 1.1993 14 6 1.5283 -2.0761 1.2459 15 6 1.6488 0.0391 2.4180 16 6 2.3680 -0.5573 3.6005 17 6 3.6110 -0.0759 3.9673 18 6 4.2724 -0.6208 5.0517 19 6 3.6904 -1.6501 5.7714 20 9 4.3365 -2.1836 6.8312 21 6 2.4439 -2.1328 5.4035 22 9 1.8737 -3.1370 6.1048 23 6 1.7817 -1.5810 4.3206 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2616 -2.1371 29 1 4.0608 -2.2459 -4.0342 30 1 0.4419 -2.0731 1.3347 31 1 1.8166 -2.5951 0.3317 32 1 1.9617 -2.5870 2.1057 33 1 1.9298 1.0869 2.3126 34 1 0.5722 -0.0345 2.5726 35 1 4.0657 0.7269 3.4058 36 1 5.2432 -0.2436 5.3375 37 1 0.8088 -1.9535 4.0355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276340102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:33 Heat of formation + Delta-G solvation = -81.104133 kcal Electronic energy + Delta-G solvation = -20494.203997 eV Core-core repulsion = 17099.751289 eV Total energy + Delta-G solvation = -3394.452707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.49922 -49.58433 -40.51601 -38.79512 -35.03678 -33.32343 -31.78406 -30.99071 -29.25060 -27.95693 -25.70988 -24.63261 -24.16721 -22.34251 -20.30386 -18.91387 -18.31925 -18.12858 -17.93267 -17.40159 -16.96263 -16.51682 -16.01483 -15.82203 -15.52441 -15.43265 -14.95497 -14.72412 -14.46465 -13.98114 -13.91666 -13.56826 -13.37048 -12.95026 -12.79482 -12.75101 -12.57275 -12.42115 -12.34164 -12.16617 -12.05447 -11.69340 -11.06345 -10.99134 -10.43053 -10.03623 -9.65041 -8.88926 -8.06219 -6.10405 -0.09199 0.04228 1.44844 1.47116 1.53882 2.34036 2.50410 2.80196 3.23545 3.29694 3.40263 3.59492 3.72788 4.04085 4.16686 4.28279 4.38817 4.45473 4.53826 4.66016 4.74476 4.77091 4.78232 4.92507 4.93036 5.04007 5.09573 5.20879 5.27646 5.32526 5.47540 5.55693 5.75559 5.77914 5.94737 6.34291 6.42477 6.54911 7.04457 7.55567 9.05564 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.005112 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.401749 B = 5475.943004 C = 6305.531127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 H 0.074 0.926 4 C 0.031 3.969 5 C -0.496 4.496 6 H 0.063 0.937 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.267 1.267 13 N -0.528 5.528 14 C 0.028 3.972 15 C 0.090 3.910 16 C -0.052 4.052 17 C -0.077 4.077 18 C -0.119 4.119 19 C 0.045 3.955 20 F -0.141 7.141 21 C 0.048 3.952 22 F -0.142 7.142 23 C -0.119 4.119 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.072 0.928 27 H -0.002 1.002 28 H -0.009 1.009 29 H 0.257 0.743 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 4.482 17.047 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.012 4.012 3 H 0.092 0.908 4 C -0.006 4.006 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.192 1.192 13 N -0.251 5.251 14 C -0.120 4.120 15 C -0.037 4.037 16 C -0.053 4.053 17 C -0.096 4.096 18 C -0.138 4.138 19 C 0.025 3.975 20 F -0.120 7.120 21 C 0.028 3.972 22 F -0.120 7.120 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.009 0.991 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.089 4.325 16.930 17.745 hybrid contribution 0.075 -0.792 -0.161 0.811 sum -3.014 3.533 16.769 17.400 Atomic orbital electron populations 1.22418 0.97221 1.01637 1.02280 1.21644 0.92029 0.97553 0.89961 0.90823 1.19121 0.95197 0.94556 0.91698 1.21501 0.93279 1.32133 1.06556 0.91919 1.25833 1.02583 0.95831 0.95899 1.70083 1.37060 1.38130 1.13150 0.85690 0.81007 0.78435 0.76994 1.19843 1.21820 1.19238 1.62027 1.59972 1.02056 1.01033 1.22347 0.97513 0.90491 1.01674 1.21162 0.97485 0.98460 0.86607 1.19843 0.95182 0.94902 0.95371 1.21283 0.93338 1.00109 0.94858 1.21336 1.02052 0.94894 0.95491 1.17935 0.91728 0.98590 0.89260 1.91484 1.80903 1.85495 1.54106 1.17816 0.92875 0.90982 0.95527 1.91486 1.84462 1.58202 1.77876 1.21105 1.01808 0.97178 0.93692 0.92591 0.93235 0.90923 0.98385 0.99065 0.93448 0.94577 0.93490 0.91654 0.88338 0.92358 0.82453 0.81431 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.23 8.50 71.98 0.61 -4.62 16 2 C 0.10 3.51 2.29 44.92 0.10 3.61 16 3 H 0.07 2.65 8.03 -2.39 -0.02 2.64 16 4 C 0.03 1.55 4.27 29.85 0.13 1.68 16 5 C -0.50 -26.96 8.84 25.60 0.23 -26.73 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.53 -17.38 4.46 -901.60 -4.02 -21.40 16 14 C 0.03 0.92 8.35 127.69 1.07 1.98 16 15 C 0.09 2.13 4.56 85.56 0.39 2.52 16 16 C -0.05 -1.19 4.87 -19.87 -0.10 -1.28 16 17 C -0.08 -1.62 9.70 22.27 0.22 -1.40 16 18 C -0.12 -2.43 10.02 22.31 0.22 -2.20 16 19 C 0.05 1.10 7.31 22.41 0.16 1.27 16 20 F -0.14 -3.70 17.18 44.97 0.77 -2.93 16 21 C 0.05 1.21 7.31 22.41 0.16 1.38 16 22 F -0.14 -3.85 17.18 44.97 0.77 -3.07 16 23 C -0.12 -2.70 7.96 22.30 0.18 -2.52 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.50 6.48 -2.39 -0.02 1.48 16 26 H 0.07 1.70 6.75 -2.39 -0.02 1.68 16 27 H 0.00 -0.11 6.10 -2.38 -0.01 -0.13 16 28 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.04 1.03 6.51 -2.39 -0.02 1.01 16 31 H 0.05 1.91 6.03 -2.38 -0.01 1.90 16 32 H 0.06 1.99 6.18 -2.39 -0.01 1.97 16 33 H 0.10 2.09 7.94 -2.39 -0.02 2.07 16 34 H 0.06 1.21 6.88 -2.38 -0.02 1.19 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.15 3.04 8.04 -2.91 -0.02 3.01 16 Total: -1.00 -63.70 309.78 4.75 -58.95 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.83 Total: -26.19 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.73 Total: -78.10 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.55 Total: -6.00 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.70 4.75 -58.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.153 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds