Wall clock time and date at job start Mon Mar 30 2020 01:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47455 * 240.00400 * 2 1 3 5 5 C 1.50696 * 109.47542 * 175.00080 * 4 2 1 6 6 H 1.08002 * 119.99979 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99971 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99722 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47376 * 89.99508 * 9 7 5 11 11 H 1.48503 * 109.46667 * 209.99620 * 9 7 5 12 12 H 1.48498 * 109.46954 * 329.99248 * 9 7 5 13 13 N 1.46904 * 109.47439 * 120.00121 * 2 1 3 14 14 C 1.46902 * 110.99949 * 275.00503 * 13 2 1 15 15 H 1.09001 * 109.47582 * 34.99020 * 14 13 2 16 16 C 1.53006 * 109.46626 * 274.99434 * 14 13 2 17 17 C 1.50698 * 109.46927 * 154.99782 * 14 13 2 18 18 C 1.38247 * 120.00188 * 24.99820 * 17 14 13 19 19 C 1.38218 * 120.07064 * 179.97438 * 18 17 14 20 20 C 1.38262 * 120.06749 * 0.04411 * 19 18 17 21 21 C 1.38365 * 119.99955 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.02971 * 180.02562 * 21 20 19 23 23 C 1.38368 * 119.99518 * 204.71812 * 17 14 13 24 24 F 1.35104 * 120.03991 * 0.02736 * 23 17 14 25 25 H 1.09002 * 109.46876 * 59.99770 * 1 2 3 26 26 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46647 * 299.99831 * 1 2 3 28 28 H 1.09004 * 109.46779 * 295.00329 * 4 2 1 29 29 H 1.09000 * 109.47052 * 54.99351 * 4 2 1 30 30 H 0.97006 * 119.99433 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00269 * 151.04254 * 13 2 1 32 32 H 1.09001 * 109.47002 * 179.97438 * 16 14 13 33 33 H 1.08993 * 109.46955 * 300.00347 * 16 14 13 34 34 H 1.09000 * 109.47050 * 60.00176 * 16 14 13 35 35 H 1.07996 * 119.97026 * 359.97254 * 18 17 14 36 36 H 1.08001 * 119.96473 * 180.02562 * 19 18 17 37 37 H 1.08006 * 119.99527 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5763 -1.8367 -3.3001 9 14 6.0921 -1.0613 -2.4366 10 1 6.7000 -2.2145 -1.7256 11 1 6.5296 -1.0683 -3.8558 12 1 6.5268 0.2034 -1.7909 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9808 2.3224 17 6 1.9786 -0.5678 3.6258 18 6 2.3590 -1.8967 3.6500 19 6 2.2648 -2.6228 4.8224 20 6 1.7892 -2.0217 5.9731 21 6 1.4074 -0.6920 5.9520 22 9 0.9431 -0.1039 7.0762 23 6 1.5081 0.0383 4.7773 24 9 1.1410 1.3383 4.7557 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -1.7714 -1.2056 29 1 1.6054 -0.2616 -2.1369 30 1 4.0607 -2.2428 -4.0360 31 1 2.9173 -1.1206 1.0287 32 1 3.4576 1.6601 3.1736 33 1 4.2359 0.2705 2.3785 34 1 3.4863 1.5524 1.3973 35 1 2.7300 -2.3681 2.7520 36 1 2.5628 -3.6607 4.8395 37 1 1.7158 -2.5903 6.8885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276364522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:55 Heat of formation + Delta-G solvation = -81.331267 kcal Electronic energy + Delta-G solvation = -20606.139171 eV Core-core repulsion = 17211.676615 eV Total energy + Delta-G solvation = -3394.462557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.42623 -48.50508 -39.27574 -36.99491 -33.69874 -32.14589 -30.29795 -29.67260 -27.64604 -27.44179 -24.06197 -23.08570 -22.68581 -20.66792 -19.52670 -17.85987 -17.09324 -16.84119 -16.37994 -16.27622 -15.21231 -14.92245 -14.87780 -14.63884 -14.41999 -14.23877 -13.76010 -13.04260 -12.83612 -12.81781 -12.33027 -12.04291 -11.88720 -11.80701 -11.64005 -11.35708 -11.25972 -11.05132 -10.76595 -10.63432 -10.47958 -10.29791 -9.32645 -9.11461 -8.82872 -8.71270 -8.44291 -7.79552 -6.07330 -4.10838 0.96606 1.02422 3.25625 3.33387 3.35085 3.41167 3.76439 4.34594 4.38714 4.49591 4.72884 4.90042 5.01928 5.17074 5.29717 5.38041 5.47719 5.68500 5.79235 5.89661 5.92187 5.99769 6.06660 6.16751 6.21779 6.29654 6.34682 6.44884 6.55504 6.79033 6.88283 6.89688 7.44001 7.58562 7.91197 7.95779 8.14809 8.31557 8.95540 9.53804 11.03439 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.004710 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.780486 B = 5943.642645 C = 6262.363720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.033 0.967 4 C 0.021 3.979 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.119 3.881 15 H 0.087 0.913 16 C -0.175 4.175 17 C -0.065 4.065 18 C -0.076 4.076 19 C -0.103 4.103 20 C -0.138 4.138 21 C 0.059 3.941 22 F -0.135 7.135 23 C 0.063 3.937 24 F -0.131 7.131 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.261 0.739 31 H 0.357 0.643 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 0.446 15.897 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.008 3.992 15 H 0.105 0.895 16 C -0.234 4.234 17 C -0.066 4.066 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.039 3.961 22 F -0.114 7.114 23 C 0.042 3.958 24 F -0.109 7.109 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.179 0.821 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.488 0.174 15.907 16.286 hybrid contribution 1.637 0.939 -0.100 1.890 sum -1.851 1.113 15.807 15.954 Atomic orbital electron populations 1.21818 0.96655 1.01430 0.99561 1.21635 0.93309 0.96140 0.90987 0.94896 1.19276 0.95449 0.96200 0.90725 1.21174 0.92143 1.34604 1.08421 0.92877 1.24980 0.98144 0.95190 0.95683 1.69960 1.35495 1.35504 1.11895 0.86664 0.86042 0.78407 0.77304 1.20600 1.21246 1.20005 1.60662 1.34767 1.31248 1.04120 1.20352 0.97798 0.92673 0.88369 0.89535 1.22449 0.97510 1.00932 1.02460 1.20005 0.97627 0.95431 0.93567 1.21131 0.97135 0.92447 0.98694 1.21133 0.98659 1.00609 0.91682 1.21014 1.01714 0.92328 1.00594 1.17622 1.04028 0.92507 0.81927 1.91496 1.86543 1.84234 1.49112 1.17538 1.04819 0.79492 0.93913 1.91493 1.89442 1.32985 1.96995 0.93202 0.92570 0.94534 0.95550 0.95975 0.92924 0.82096 0.92774 0.91987 0.91216 0.83324 0.84403 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.40 37.16 0.35 -2.04 16 2 C 0.09 1.73 2.40 -67.71 -0.16 1.57 16 3 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 4 C 0.02 0.50 4.57 -27.89 -0.13 0.38 16 5 C -0.53 -13.66 8.12 -34.44 -0.28 -13.94 16 6 H 0.05 1.33 7.49 -52.49 -0.39 0.94 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -11.83 5.06 -100.95 -0.51 -12.34 16 14 C 0.12 1.84 2.38 -68.86 -0.16 1.67 16 15 H 0.09 1.39 6.77 -51.93 -0.35 1.04 16 16 C -0.17 -2.60 9.13 37.16 0.34 -2.26 16 17 C -0.06 -0.92 5.06 -104.57 -0.53 -1.44 16 18 C -0.08 -0.96 9.32 -39.59 -0.37 -1.33 16 19 C -0.10 -1.07 10.04 -39.58 -0.40 -1.46 16 20 C -0.14 -1.46 10.02 -39.53 -0.40 -1.86 16 21 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16 22 F -0.14 -1.83 17.18 2.25 0.04 -1.79 16 23 C 0.06 0.90 7.25 -39.37 -0.29 0.61 16 24 F -0.13 -1.98 16.49 2.25 0.04 -1.95 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.58 7.43 -51.93 -0.39 0.20 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.36 6.66 6.38 -39.29 -0.25 6.41 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.07 1.11 7.43 -51.93 -0.39 0.73 16 35 H 0.15 1.91 6.89 -52.49 -0.36 1.55 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -27.97 316.09 -7.38 -35.35 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.01 Total: 3.25 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.41 Total: -18.03 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.23 Total: -37.23 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.97 -7.38 -35.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.984 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds