Wall clock time and date at job start Mon Mar 30 2020 01:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47455 * 240.00400 * 2 1 3 5 5 C 1.50696 * 109.47542 * 175.00080 * 4 2 1 6 6 H 1.08002 * 119.99979 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99971 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99722 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47376 * 89.99508 * 9 7 5 11 11 H 1.48503 * 109.46667 * 209.99620 * 9 7 5 12 12 H 1.48498 * 109.46954 * 329.99248 * 9 7 5 13 13 N 1.46904 * 109.47439 * 120.00121 * 2 1 3 14 14 C 1.46902 * 110.99949 * 275.00503 * 13 2 1 15 15 H 1.09001 * 109.47582 * 34.99020 * 14 13 2 16 16 C 1.53006 * 109.46626 * 274.99434 * 14 13 2 17 17 C 1.50698 * 109.46927 * 154.99782 * 14 13 2 18 18 C 1.38247 * 120.00188 * 24.99820 * 17 14 13 19 19 C 1.38218 * 120.07064 * 179.97438 * 18 17 14 20 20 C 1.38262 * 120.06749 * 0.04411 * 19 18 17 21 21 C 1.38365 * 119.99955 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.02971 * 180.02562 * 21 20 19 23 23 C 1.38368 * 119.99518 * 204.71812 * 17 14 13 24 24 F 1.35104 * 120.03991 * 0.02736 * 23 17 14 25 25 H 1.09002 * 109.46876 * 59.99770 * 1 2 3 26 26 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46647 * 299.99831 * 1 2 3 28 28 H 1.09004 * 109.46779 * 295.00329 * 4 2 1 29 29 H 1.09000 * 109.47052 * 54.99351 * 4 2 1 30 30 H 0.97006 * 119.99433 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00269 * 151.04254 * 13 2 1 32 32 H 1.09001 * 109.47002 * 179.97438 * 16 14 13 33 33 H 1.08993 * 109.46955 * 300.00347 * 16 14 13 34 34 H 1.09000 * 109.47050 * 60.00176 * 16 14 13 35 35 H 1.07996 * 119.97026 * 359.97254 * 18 17 14 36 36 H 1.08001 * 119.96473 * 180.02562 * 19 18 17 37 37 H 1.08006 * 119.99527 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5763 -1.8367 -3.3001 9 14 6.0921 -1.0613 -2.4366 10 1 6.7000 -2.2145 -1.7256 11 1 6.5296 -1.0683 -3.8558 12 1 6.5268 0.2034 -1.7909 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9808 2.3224 17 6 1.9786 -0.5678 3.6258 18 6 2.3590 -1.8967 3.6500 19 6 2.2648 -2.6228 4.8224 20 6 1.7892 -2.0217 5.9731 21 6 1.4074 -0.6920 5.9520 22 9 0.9431 -0.1039 7.0762 23 6 1.5081 0.0383 4.7773 24 9 1.1410 1.3383 4.7557 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -1.7714 -1.2056 29 1 1.6054 -0.2616 -2.1369 30 1 4.0607 -2.2428 -4.0360 31 1 2.9173 -1.1206 1.0287 32 1 3.4576 1.6601 3.1736 33 1 4.2359 0.2705 2.3785 34 1 3.4863 1.5524 1.3973 35 1 2.7300 -2.3681 2.7520 36 1 2.5628 -3.6607 4.8395 37 1 1.7158 -2.5903 6.8885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276364522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:55 Heat of formation + Delta-G solvation = -95.915910 kcal Electronic energy + Delta-G solvation = -20606.771609 eV Core-core repulsion = 17211.676615 eV Total energy + Delta-G solvation = -3395.094994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.47395 -49.56275 -40.34022 -38.37396 -35.35062 -33.88433 -31.28067 -30.79629 -29.36362 -28.94446 -25.36144 -24.75753 -23.71172 -21.88437 -21.08124 -18.90210 -18.46299 -18.14788 -17.87447 -17.32203 -16.71921 -16.32897 -16.06352 -15.94723 -15.58619 -15.41052 -15.03189 -14.52742 -14.27572 -13.90140 -13.70473 -13.50785 -13.32453 -13.05831 -13.02458 -12.81552 -12.62656 -12.58555 -12.43119 -12.21893 -12.05447 -11.77701 -11.24730 -10.98141 -10.53979 -9.83219 -9.69400 -9.23758 -8.15732 -6.25574 -0.00655 0.07377 1.42422 1.43576 1.53015 2.42938 2.46448 2.76175 3.15308 3.27749 3.45572 3.60783 3.91662 4.00160 4.13689 4.24671 4.28942 4.37913 4.55338 4.61541 4.70895 4.81029 4.89746 4.92481 5.02239 5.08497 5.17530 5.21707 5.30832 5.34826 5.39945 5.53771 5.60354 5.84250 5.88075 6.24144 6.35376 6.62763 6.89887 7.43373 8.95847 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.004710 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.780486 B = 5943.642645 C = 6262.363720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.028 0.972 4 C 0.029 3.971 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.123 3.877 15 H 0.079 0.921 16 C -0.169 4.169 17 C -0.077 4.077 18 C -0.084 4.084 19 C -0.088 4.088 20 C -0.123 4.123 21 C 0.048 3.952 22 F -0.141 7.141 23 C 0.044 3.956 24 F -0.142 7.142 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.001 0.999 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.350 0.650 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.173 0.827 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -0.273 17.862 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 H 0.046 0.954 4 C -0.008 4.008 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.302 5.302 14 C 0.013 3.987 15 H 0.097 0.903 16 C -0.228 4.228 17 C -0.079 4.079 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.141 4.141 21 C 0.028 3.972 22 F -0.120 7.120 23 C 0.024 3.976 24 F -0.121 7.121 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.171 0.829 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.191 0.809 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.627 -0.534 17.897 18.096 hybrid contribution 1.332 1.131 -0.667 1.870 sum -1.295 0.597 17.230 17.289 Atomic orbital electron populations 1.21735 0.94913 1.01515 1.00591 1.21409 0.94686 0.95153 0.89950 0.95410 1.19117 0.94935 0.94862 0.91925 1.21523 0.93061 1.33869 1.08320 0.92015 1.25831 1.02920 0.94949 0.95410 1.70096 1.37411 1.36831 1.12715 0.85585 0.80320 0.78853 0.77097 1.19577 1.21496 1.19128 1.60654 1.34289 1.31525 1.03769 1.20283 0.97791 0.92420 0.88241 0.90291 1.22378 0.97325 1.00955 1.02143 1.19835 0.99233 0.96064 0.92755 1.21231 0.97328 0.92006 0.99687 1.21489 0.96837 1.01866 0.90393 1.21401 0.99594 0.91232 1.01903 1.17867 1.04555 0.93419 0.81358 1.91482 1.86707 1.84527 1.49235 1.17708 1.05961 0.79297 0.94647 1.91456 1.89731 1.33832 1.97101 0.92878 0.92932 0.92779 0.98057 0.98827 0.92956 0.82860 0.91625 0.91734 0.92679 0.83761 0.80946 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.40 71.98 0.68 -3.83 16 2 C 0.10 3.86 2.40 44.91 0.11 3.96 16 3 H 0.03 1.13 7.11 -2.39 -0.02 1.11 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.53 -27.79 8.12 25.60 0.21 -27.58 16 6 H 0.06 3.07 7.49 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 9 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 N -0.67 -23.38 5.06 -473.29 -2.39 -25.77 16 14 C 0.12 3.74 2.38 44.17 0.11 3.85 16 15 H 0.08 2.51 6.77 -2.39 -0.02 2.49 16 16 C -0.17 -4.94 9.13 71.98 0.66 -4.28 16 17 C -0.08 -2.10 5.06 -19.83 -0.10 -2.20 16 18 C -0.08 -1.97 9.32 22.27 0.21 -1.76 16 19 C -0.09 -1.51 10.04 22.27 0.22 -1.29 16 20 C -0.12 -2.16 10.02 22.31 0.22 -1.93 16 21 C 0.05 1.15 7.31 22.41 0.16 1.32 16 22 F -0.14 -3.59 17.18 44.97 0.77 -2.81 16 23 C 0.04 1.22 7.25 22.41 0.16 1.38 16 24 F -0.14 -4.28 16.49 44.97 0.74 -3.54 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.68 7.43 -2.39 -0.02 1.66 16 28 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.35 13.04 6.38 -89.70 -0.57 12.47 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.82 8.13 -2.39 -0.02 1.81 16 34 H 0.05 1.75 7.43 -2.39 -0.02 1.73 16 35 H 0.14 3.50 6.89 -2.91 -0.02 3.48 16 36 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -60.54 316.09 5.17 -55.37 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.50 Total: 16.62 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.23 Total: -29.93 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.11 Total: -80.05 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 1.51 Total: -6.36 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -60.54 5.17 -55.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.544 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds