Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 14 14 C 1.46908 * 110.99837 * 84.99962 * 13 2 1 15 15 H 1.08995 * 109.47306 * 325.00071 * 14 13 2 16 16 C 1.53000 * 109.46974 * 85.00191 * 14 13 2 17 17 C 1.50706 * 109.46857 * 205.00258 * 14 13 2 18 18 C 1.38251 * 120.00021 * 339.72392 * 17 14 13 19 19 C 1.38215 * 120.06713 * 179.77267 * 18 17 14 20 20 C 1.38259 * 120.07363 * 0.50058 * 19 18 17 21 21 C 1.38371 * 119.99475 * 359.75583 * 20 19 18 22 22 F 1.35101 * 120.03369 * 179.97438 * 21 20 19 23 23 C 1.38369 * 119.99670 * 160.00069 * 17 14 13 24 24 F 1.35103 * 120.03597 * 359.97438 * 23 17 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00604 * 208.95432 * 13 2 1 32 32 H 1.08994 * 109.47425 * 299.99897 * 16 14 13 33 33 H 1.09003 * 109.46758 * 60.00533 * 16 14 13 34 34 H 1.08997 * 109.46833 * 179.97438 * 16 14 13 35 35 H 1.08001 * 119.96714 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.96540 * 180.25925 * 19 18 17 37 37 H 1.08001 * 120.00053 * 179.72421 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1993 14 6 2.0825 0.2226 -2.3468 15 1 1.2577 0.9329 -2.2907 16 6 3.4112 0.9809 -2.3223 17 6 1.9787 -0.5677 -3.6258 18 6 2.2657 -1.9201 -3.6280 19 6 2.1664 -2.6472 -4.7992 20 6 1.7898 -2.0217 -5.9733 21 6 1.5071 -0.6672 -5.9754 22 9 1.1395 -0.0550 -7.1223 23 6 1.6017 0.0614 -4.7991 24 9 1.3259 1.3840 -4.7988 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 6.0256 -1.5084 3.1481 31 1 2.9173 -1.1205 -1.0286 32 1 3.4863 1.5525 -1.3973 33 1 4.2360 0.2705 -2.3785 34 1 3.4579 1.6595 -3.1739 35 1 2.5639 -2.4098 -2.7127 36 1 2.3869 -3.7045 -4.7981 37 1 1.7169 -2.5901 -6.8887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276364526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -77.684747 kcal Electronic energy + Delta-G solvation = -20618.694821 eV Core-core repulsion = 17224.390389 eV Total energy + Delta-G solvation = -3394.304432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.41940 -48.49834 -39.27597 -37.06551 -33.72260 -32.18322 -30.29924 -29.73944 -28.06510 -27.62174 -24.05311 -22.88486 -22.55095 -20.64344 -19.54671 -17.85850 -17.08967 -16.85510 -16.80774 -16.26792 -15.20658 -14.95901 -14.90898 -14.64930 -14.35920 -14.14004 -13.76535 -13.07362 -12.84459 -12.77212 -12.34031 -12.24996 -12.02163 -11.86696 -11.74673 -11.61314 -11.32625 -11.12538 -10.84966 -10.66192 -10.34317 -9.86480 -9.53807 -9.27556 -8.82541 -8.70487 -8.60832 -7.86515 -6.12029 -4.11004 0.97368 1.03176 3.27136 3.35320 3.38884 3.42138 3.76725 4.34842 4.39628 4.49096 4.71046 4.89939 5.02111 5.17247 5.26222 5.38819 5.49747 5.70404 5.79022 5.79575 5.91439 5.96478 6.03259 6.09728 6.17685 6.30210 6.32963 6.46104 6.50893 6.65325 6.73689 6.80399 7.12701 7.21765 7.69731 7.76430 8.07848 8.42350 8.89832 9.50806 11.00645 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.004571 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.423815 B = 6124.078827 C = 6313.282666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.097 3.903 3 H 0.039 0.961 4 C -0.017 4.017 5 C -0.526 4.526 6 H 0.071 0.929 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.676 5.676 14 C 0.121 3.879 15 H 0.086 0.914 16 C -0.174 4.174 17 C -0.066 4.066 18 C -0.075 4.075 19 C -0.103 4.103 20 C -0.138 4.138 21 C 0.059 3.941 22 F -0.135 7.135 23 C 0.063 3.937 24 F -0.130 7.130 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.361 0.639 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -1.196 -13.979 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.012 4.012 3 H 0.057 0.943 4 C -0.054 4.054 5 C -0.564 4.564 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.708 3.292 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.310 5.310 14 C 0.010 3.990 15 H 0.104 0.896 16 C -0.233 4.233 17 C -0.067 4.067 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.156 4.156 21 C 0.039 3.961 22 F -0.114 7.114 23 C 0.042 3.958 24 F -0.109 7.109 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.183 0.817 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.159 -1.419 -14.055 16.313 hybrid contribution 0.322 0.423 0.705 0.883 sum -7.837 -0.996 -13.350 15.512 Atomic orbital electron populations 1.21854 0.96554 1.01461 0.99873 1.21407 0.93181 0.96351 0.90294 0.94275 1.19768 0.97082 0.95963 0.92615 1.21090 0.89804 1.35459 1.10002 0.91050 1.25000 0.94651 0.95691 0.97807 1.69912 1.06581 1.45092 1.32314 0.86770 0.80421 0.80556 0.81471 1.20243 1.21559 1.19053 1.60668 1.35128 1.31238 1.04006 1.20327 0.97902 0.92577 0.88201 0.89558 1.22434 0.97393 1.00994 1.02498 1.20002 0.98118 0.95243 0.93386 1.21161 0.96756 0.92413 0.99024 1.21138 0.98777 1.00677 0.91537 1.21016 1.02377 0.91832 1.00418 1.17620 1.05495 0.91847 0.81157 1.91497 1.89416 1.83252 1.47226 1.17533 1.06043 0.78535 0.93646 1.91494 1.91480 1.30845 1.97084 0.92579 0.94123 0.93189 0.96003 0.96040 0.92701 0.81671 0.91144 0.91800 0.92768 0.83151 0.84417 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.40 37.16 0.35 -1.91 16 2 C 0.10 1.81 2.40 -67.72 -0.16 1.65 16 3 H 0.04 0.77 7.11 -51.93 -0.37 0.40 16 4 C -0.02 -0.37 3.64 -27.89 -0.10 -0.47 16 5 C -0.53 -13.78 8.67 -34.44 -0.30 -14.08 16 6 H 0.07 1.99 7.73 -52.49 -0.41 1.58 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.88 20.95 27.47 -169.99 -4.67 16.29 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 N -0.68 -11.61 4.90 -100.95 -0.49 -12.10 16 14 C 0.12 1.86 2.33 -68.86 -0.16 1.70 16 15 H 0.09 1.36 6.92 -51.93 -0.36 1.00 16 16 C -0.17 -2.71 9.12 37.16 0.34 -2.37 16 17 C -0.07 -0.93 5.09 -104.57 -0.53 -1.47 16 18 C -0.08 -0.96 9.32 -39.58 -0.37 -1.33 16 19 C -0.10 -1.08 10.04 -39.58 -0.40 -1.47 16 20 C -0.14 -1.46 10.02 -39.52 -0.40 -1.86 16 21 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16 22 F -0.14 -1.84 17.18 2.25 0.04 -1.80 16 23 C 0.06 0.90 7.25 -39.37 -0.29 0.61 16 24 F -0.13 -1.98 16.58 2.25 0.04 -1.94 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 29 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.36 6.78 6.48 -39.29 -0.25 6.52 16 32 H 0.07 1.19 7.43 -51.93 -0.39 0.80 16 33 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.15 1.95 6.84 -52.49 -0.36 1.59 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -28.21 312.60 -6.99 -35.21 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.99 Total: 4.06 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.40 Total: -18.68 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.28 Total: -37.84 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.21 -6.99 -35.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.479 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds