Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 14 14 C 1.46908 * 110.99837 * 84.99962 * 13 2 1 15 15 H 1.08995 * 109.47306 * 325.00071 * 14 13 2 16 16 C 1.53000 * 109.46974 * 85.00191 * 14 13 2 17 17 C 1.50706 * 109.46857 * 205.00258 * 14 13 2 18 18 C 1.38251 * 120.00021 * 339.72392 * 17 14 13 19 19 C 1.38215 * 120.06713 * 179.77267 * 18 17 14 20 20 C 1.38259 * 120.07363 * 0.50058 * 19 18 17 21 21 C 1.38371 * 119.99475 * 359.75583 * 20 19 18 22 22 F 1.35101 * 120.03369 * 179.97438 * 21 20 19 23 23 C 1.38369 * 119.99670 * 160.00069 * 17 14 13 24 24 F 1.35103 * 120.03597 * 359.97438 * 23 17 14 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00604 * 208.95432 * 13 2 1 32 32 H 1.08994 * 109.47425 * 299.99897 * 16 14 13 33 33 H 1.09003 * 109.46758 * 60.00533 * 16 14 13 34 34 H 1.08997 * 109.46833 * 179.97438 * 16 14 13 35 35 H 1.08001 * 119.96714 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.96540 * 180.25925 * 19 18 17 37 37 H 1.08001 * 120.00053 * 179.72421 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1993 14 6 2.0825 0.2226 -2.3468 15 1 1.2577 0.9329 -2.2907 16 6 3.4112 0.9809 -2.3223 17 6 1.9787 -0.5677 -3.6258 18 6 2.2657 -1.9201 -3.6280 19 6 2.1664 -2.6472 -4.7992 20 6 1.7898 -2.0217 -5.9733 21 6 1.5071 -0.6672 -5.9754 22 9 1.1395 -0.0550 -7.1223 23 6 1.6017 0.0614 -4.7991 24 9 1.3259 1.3840 -4.7988 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 6.0256 -1.5084 3.1481 31 1 2.9173 -1.1205 -1.0286 32 1 3.4863 1.5525 -1.3973 33 1 4.2360 0.2705 -2.3785 34 1 3.4579 1.6595 -3.1739 35 1 2.5639 -2.4098 -2.7127 36 1 2.3869 -3.7045 -4.7981 37 1 1.7169 -2.5901 -6.8887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276364526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -93.049689 kcal Electronic energy + Delta-G solvation = -20619.361095 eV Core-core repulsion = 17224.390389 eV Total energy + Delta-G solvation = -3394.970706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.47857 -49.56710 -40.35117 -38.40746 -35.31893 -33.99047 -31.30218 -30.88887 -29.81571 -28.96204 -25.27677 -24.46313 -23.68743 -21.88153 -21.05083 -18.93663 -18.86922 -18.15212 -17.88529 -17.32548 -16.60604 -16.41842 -16.03431 -15.93984 -15.57782 -15.43963 -15.01290 -14.64130 -14.33350 -13.92494 -13.85666 -13.68968 -13.45077 -13.16169 -13.03917 -12.83744 -12.64497 -12.55165 -12.33655 -12.06732 -11.81865 -11.72587 -11.28441 -11.20683 -10.71852 -9.83934 -9.69824 -9.28126 -8.24299 -6.26967 -0.01097 0.06782 1.39743 1.41952 1.52446 2.40104 2.46195 2.74928 3.09197 3.26050 3.44321 3.59181 3.91981 3.99026 4.09984 4.21042 4.27814 4.33989 4.51066 4.57506 4.67938 4.78407 4.88501 4.90236 5.02290 5.07857 5.12879 5.15871 5.24483 5.29549 5.34489 5.46401 5.53437 5.70968 5.83996 6.26132 6.32617 6.56010 6.79829 7.37803 8.91297 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.004571 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.423815 B = 6124.078827 C = 6313.282666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.099 3.901 3 H 0.024 0.976 4 C -0.012 4.012 5 C -0.521 4.521 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.250 1.250 13 N -0.669 5.669 14 C 0.126 3.874 15 H 0.083 0.917 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.084 4.084 19 C -0.088 4.088 20 C -0.122 4.122 21 C 0.048 3.952 22 F -0.141 7.141 23 C 0.044 3.956 24 F -0.142 7.142 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.350 0.650 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.173 0.827 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 -2.877 -14.799 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.011 4.011 3 H 0.043 0.957 4 C -0.050 4.050 5 C -0.559 4.559 6 H 0.059 0.941 7 C -0.186 4.186 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.174 1.174 13 N -0.301 5.301 14 C 0.016 3.984 15 H 0.101 0.899 16 C -0.226 4.226 17 C -0.081 4.081 18 C -0.102 4.102 19 C -0.106 4.106 20 C -0.141 4.141 21 C 0.028 3.972 22 F -0.119 7.119 23 C 0.024 3.976 24 F -0.121 7.121 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.191 0.809 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.877 -3.089 -14.893 18.135 hybrid contribution 0.896 0.964 0.859 1.572 sum -8.981 -2.125 -14.033 16.796 Atomic orbital electron populations 1.21763 0.94023 1.02098 1.00997 1.21332 0.95109 0.95100 0.89546 0.95748 1.19705 0.94279 0.96619 0.94379 1.21364 0.91910 1.33873 1.08722 0.94114 1.25863 0.95352 0.96948 1.00441 1.70058 1.08417 1.46983 1.33465 0.85749 0.79588 0.79596 0.78206 1.19237 1.21803 1.17396 1.60730 1.34223 1.31309 1.03849 1.20243 0.97334 0.92444 0.88426 0.89896 1.22342 0.97586 1.00824 1.01842 1.19832 0.99821 0.95856 0.92543 1.21257 0.96980 0.91939 1.00022 1.21495 0.96758 1.02097 0.90261 1.21408 1.00146 0.90749 1.01775 1.17864 1.06012 0.92782 0.80552 1.91483 1.89552 1.83557 1.47337 1.17706 1.07269 0.78273 0.94352 1.91456 1.91751 1.31711 1.97182 0.92114 0.92915 0.92220 0.96019 0.95544 0.92753 0.82971 0.93150 0.92553 0.91671 0.83653 0.80913 0.80912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.40 71.98 0.68 -3.33 16 2 C 0.10 3.66 2.40 44.92 0.11 3.77 16 3 H 0.02 0.97 7.11 -2.39 -0.02 0.95 16 4 C -0.01 -0.53 3.64 29.85 0.11 -0.42 16 5 C -0.52 -27.74 8.67 25.60 0.22 -27.52 16 6 H 0.04 2.37 7.73 -2.91 -0.02 2.34 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.95 -57.17 13.96 21.45 0.30 -56.87 16 9 Si 0.94 42.81 27.47 68.60 1.88 44.69 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 13 N -0.67 -22.91 4.90 -473.31 -2.32 -25.23 16 14 C 0.13 3.91 2.33 44.17 0.10 4.02 16 15 H 0.08 2.62 6.92 -2.39 -0.02 2.60 16 16 C -0.17 -5.40 9.12 71.98 0.66 -4.74 16 17 C -0.08 -2.19 5.09 -19.83 -0.10 -2.29 16 18 C -0.08 -1.99 9.32 22.27 0.21 -1.79 16 19 C -0.09 -1.54 10.04 22.27 0.22 -1.32 16 20 C -0.12 -2.18 10.02 22.31 0.22 -1.96 16 21 C 0.05 1.16 7.31 22.41 0.16 1.33 16 22 F -0.14 -3.61 17.18 44.97 0.77 -2.84 16 23 C 0.04 1.24 7.25 22.41 0.16 1.40 16 24 F -0.14 -4.33 16.58 44.97 0.75 -3.58 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.48 7.43 -2.39 -0.02 1.46 16 27 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 29 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.35 13.38 6.48 -89.70 -0.58 12.80 16 32 H 0.05 1.79 7.43 -2.39 -0.02 1.78 16 33 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.15 3.61 6.84 -2.91 -0.02 3.59 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -61.36 312.60 5.04 -56.32 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.44 Total: 19.28 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.22 Total: -31.77 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.02 Total: -82.10 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.52 Total: -6.42 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -61.36 5.04 -56.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.733 kcal (2) G-P(sol) polarization free energy of solvation -61.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds