Wall clock time and date at job start Mon Mar 30 2020 01:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47551 * 239.99839 * 2 1 3 5 5 C 1.50701 * 109.47530 * 174.99752 * 4 2 1 6 6 H 1.07990 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99849 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00429 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46851 * 89.99951 * 9 7 5 11 11 H 1.48496 * 109.47268 * 210.00116 * 9 7 5 12 12 H 1.48505 * 109.46782 * 330.00354 * 9 7 5 13 13 N 1.46899 * 109.47246 * 119.99324 * 2 1 3 14 14 C 1.46899 * 111.00583 * 265.97916 * 13 2 1 15 15 H 1.08996 * 109.47186 * 338.16794 * 14 13 2 16 16 C 1.53003 * 109.46894 * 98.16428 * 14 13 2 17 17 C 1.50696 * 109.47473 * 218.16146 * 14 13 2 18 18 C 1.38259 * 120.00246 * 340.00729 * 17 14 13 19 19 C 1.38214 * 120.07184 * 180.02562 * 18 17 14 20 20 C 1.38257 * 120.06978 * 359.97053 * 19 18 17 21 21 C 1.38367 * 120.00053 * 0.02562 * 20 19 18 22 22 F 1.35098 * 120.03515 * 180.02562 * 21 20 19 23 23 C 1.38367 * 119.99793 * 159.72396 * 17 14 13 24 24 F 1.35100 * 120.03695 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.47149 * 186.07750 * 1 2 3 26 26 H 1.09002 * 109.47306 * 306.08147 * 1 2 3 27 27 H 1.09003 * 109.47391 * 66.07920 * 1 2 3 28 28 H 1.08998 * 109.47076 * 295.00392 * 4 2 1 29 29 H 1.09005 * 109.47105 * 54.99788 * 4 2 1 30 30 H 0.97006 * 120.00551 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99882 * 29.94082 * 13 2 1 32 32 H 1.09002 * 109.47114 * 54.47365 * 16 14 13 33 33 H 1.08996 * 109.47425 * 174.47651 * 16 14 13 34 34 H 1.09002 * 109.47251 * 294.48309 * 16 14 13 35 35 H 1.08002 * 119.95953 * 359.97438 * 18 17 14 36 36 H 1.07999 * 119.96198 * 179.97438 * 19 18 17 37 37 H 1.07996 * 119.99877 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0861 -0.5392 7 6 4.2304 -1.1935 -2.3577 8 7 5.5411 -1.1011 -2.4129 9 14 3.3017 -2.1100 -3.6945 10 1 2.9399 -1.1658 -4.7821 11 1 4.1606 -3.1905 -4.2422 12 1 2.0661 -2.7021 -3.1218 13 7 2.0196 -0.6923 1.1995 14 6 2.2858 0.2603 2.2856 15 1 2.4368 1.2554 1.8672 16 6 1.0942 0.2859 3.2449 17 6 3.5236 -0.1634 3.0334 18 6 3.9720 -1.4683 2.9450 19 6 5.1069 -1.8586 3.6306 20 6 5.7964 -0.9448 4.4060 21 6 5.3503 0.3618 4.4965 22 9 6.0238 1.2554 5.2535 23 6 4.2147 0.7549 3.8038 24 9 3.7807 2.0317 3.8858 25 1 -0.3633 -1.0219 0.1088 26 1 -0.3634 0.6052 0.8305 27 1 -0.3634 0.4167 -0.9394 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1370 30 1 6.0256 -1.5079 -3.1483 31 1 1.3706 -1.4060 1.4954 32 1 0.8817 -0.7268 3.5876 33 1 1.3307 0.9172 4.1014 34 1 0.2210 0.6855 2.7291 35 1 3.4345 -2.1835 2.3401 36 1 5.4553 -2.8784 3.5606 37 1 6.6832 -1.2509 4.9409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276364532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:01 Heat of formation + Delta-G solvation = -69.843026 kcal Electronic energy + Delta-G solvation = -20806.745273 eV Core-core repulsion = 17412.780883 eV Total energy + Delta-G solvation = -3393.964389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.23842 -48.32185 -39.11430 -37.08020 -33.68415 -32.07160 -30.08247 -29.65703 -28.02887 -27.69046 -23.83754 -22.84213 -22.39442 -20.71621 -19.84368 -17.68222 -16.96043 -16.66713 -16.54781 -16.08432 -15.08535 -14.77534 -14.72631 -14.51715 -14.19727 -13.95365 -13.89589 -13.04991 -12.87934 -12.74106 -12.43746 -12.29850 -12.01208 -11.86675 -11.73697 -11.60745 -11.23269 -11.15600 -10.89103 -10.58714 -10.31480 -9.71282 -9.59190 -9.03163 -8.60779 -8.47595 -8.41673 -7.79515 -5.89800 -3.83902 1.19615 1.25707 3.35761 3.43793 3.46068 3.63229 3.96546 4.48186 4.54956 4.61756 4.76568 5.08736 5.11554 5.29310 5.32730 5.39483 5.44476 5.58140 5.65063 5.66301 5.83013 5.97012 6.00490 6.04825 6.13729 6.24584 6.30398 6.45110 6.51282 6.59856 6.79077 7.01641 7.14633 7.28086 7.73841 7.87300 8.00987 8.72618 9.21196 9.73073 11.24156 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.006040 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.928611 B = 4634.655511 C = 5518.016451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.099 3.901 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.488 4.488 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.656 5.656 14 C 0.124 3.876 15 H 0.088 0.912 16 C -0.173 4.173 17 C -0.068 4.068 18 C -0.061 4.061 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.056 3.944 22 F -0.137 7.137 23 C 0.063 3.937 24 F -0.133 7.133 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.334 0.666 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 -0.443 13.696 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.010 4.010 3 H 0.087 0.913 4 C -0.041 4.041 5 C -0.527 4.527 6 H 0.093 0.907 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.285 5.285 14 C 0.013 3.987 15 H 0.106 0.894 16 C -0.231 4.231 17 C -0.070 4.070 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.154 4.154 21 C 0.036 3.964 22 F -0.116 7.116 23 C 0.042 3.958 24 F -0.112 7.112 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.153 0.847 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.716 -0.426 13.386 14.562 hybrid contribution -1.050 0.157 -0.443 1.151 sum -6.766 -0.269 12.943 14.607 Atomic orbital electron populations 1.22635 0.98916 1.01135 1.01332 1.21680 0.90075 0.97891 0.91385 0.91315 1.19615 0.97785 0.95496 0.91227 1.21012 0.89504 1.33686 1.08469 0.90703 1.25010 0.94655 0.96331 0.97853 1.69920 1.06428 1.46244 1.32261 0.86885 0.80183 0.80012 0.82690 1.20740 1.21717 1.19289 1.60407 1.51221 1.13276 1.03632 1.20384 0.90458 0.96858 0.91028 0.89430 1.22507 0.98248 1.02314 1.00054 1.19914 0.97644 0.93295 0.96129 1.21104 0.95523 0.95402 0.95876 1.21128 0.95178 0.99895 0.95980 1.20996 1.01567 0.90963 1.01878 1.17584 0.93149 0.88502 0.97151 1.91483 1.79098 1.67274 1.73698 1.17517 0.95720 0.80095 1.02467 1.91473 1.89116 1.35561 1.95019 0.92894 0.93781 0.92347 0.96450 0.97084 0.93132 0.84707 0.92084 0.92278 0.91929 0.83129 0.84548 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.24 37.15 0.34 -2.27 16 2 C 0.10 1.79 2.60 -67.72 -0.18 1.62 16 3 H 0.07 1.33 7.15 -51.93 -0.37 0.96 16 4 C 0.00 -0.08 3.72 -27.88 -0.10 -0.18 16 5 C -0.49 -13.55 9.39 -34.44 -0.32 -13.87 16 6 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.66 -10.84 4.44 -100.96 -0.45 -11.29 16 14 C 0.12 1.87 2.64 -68.87 -0.18 1.69 16 15 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 16 C -0.17 -2.06 9.17 37.16 0.34 -1.72 16 17 C -0.07 -1.07 5.09 -104.57 -0.53 -1.61 16 18 C -0.06 -0.91 9.33 -39.58 -0.37 -1.28 16 19 C -0.10 -1.36 10.04 -39.58 -0.40 -1.76 16 20 C -0.14 -1.79 10.02 -39.53 -0.40 -2.18 16 21 C 0.06 0.86 7.31 -39.36 -0.29 0.58 16 22 F -0.14 -2.15 17.18 2.25 0.04 -2.11 16 23 C 0.06 1.02 7.25 -39.36 -0.29 0.73 16 24 F -0.13 -2.22 16.57 2.25 0.04 -2.18 16 25 H 0.05 0.71 8.00 -51.93 -0.42 0.30 16 26 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.33 4.76 7.72 -39.29 -0.30 4.46 16 32 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 6.59 -51.93 -0.34 0.36 16 35 H 0.15 2.23 7.13 -52.49 -0.37 1.86 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -30.91 313.20 -6.98 -37.89 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.97 Total: 1.91 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.47 Total: -18.59 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.33 Total: -38.63 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.91 -6.98 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.953 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds