Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47551 * 239.99839 * 2 1 3 5 5 C 1.50701 * 109.47530 * 174.99752 * 4 2 1 6 6 H 1.07990 * 119.99782 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99849 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00429 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46851 * 89.99951 * 9 7 5 11 11 H 1.48496 * 109.47268 * 210.00116 * 9 7 5 12 12 H 1.48505 * 109.46782 * 330.00354 * 9 7 5 13 13 N 1.46899 * 109.47246 * 119.99324 * 2 1 3 14 14 C 1.46899 * 111.00583 * 265.97916 * 13 2 1 15 15 H 1.08996 * 109.47186 * 338.16794 * 14 13 2 16 16 C 1.53003 * 109.46894 * 98.16428 * 14 13 2 17 17 C 1.50696 * 109.47473 * 218.16146 * 14 13 2 18 18 C 1.38259 * 120.00246 * 340.00729 * 17 14 13 19 19 C 1.38214 * 120.07184 * 180.02562 * 18 17 14 20 20 C 1.38257 * 120.06978 * 359.97053 * 19 18 17 21 21 C 1.38367 * 120.00053 * 0.02562 * 20 19 18 22 22 F 1.35098 * 120.03515 * 180.02562 * 21 20 19 23 23 C 1.38367 * 119.99793 * 159.72396 * 17 14 13 24 24 F 1.35100 * 120.03695 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.47149 * 186.07750 * 1 2 3 26 26 H 1.09002 * 109.47306 * 306.08147 * 1 2 3 27 27 H 1.09003 * 109.47391 * 66.07920 * 1 2 3 28 28 H 1.08998 * 109.47076 * 295.00392 * 4 2 1 29 29 H 1.09005 * 109.47105 * 54.99788 * 4 2 1 30 30 H 0.97006 * 120.00551 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99882 * 29.94082 * 13 2 1 32 32 H 1.09002 * 109.47114 * 54.47365 * 16 14 13 33 33 H 1.08996 * 109.47425 * 174.47651 * 16 14 13 34 34 H 1.09002 * 109.47251 * 294.48309 * 16 14 13 35 35 H 1.08002 * 119.95953 * 359.97438 * 18 17 14 36 36 H 1.07999 * 119.96198 * 179.97438 * 19 18 17 37 37 H 1.07996 * 119.99877 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0861 -0.5392 7 6 4.2304 -1.1935 -2.3577 8 7 5.5411 -1.1011 -2.4129 9 14 3.3017 -2.1100 -3.6945 10 1 2.9399 -1.1658 -4.7821 11 1 4.1606 -3.1905 -4.2422 12 1 2.0661 -2.7021 -3.1218 13 7 2.0196 -0.6923 1.1995 14 6 2.2858 0.2603 2.2856 15 1 2.4368 1.2554 1.8672 16 6 1.0942 0.2859 3.2449 17 6 3.5236 -0.1634 3.0334 18 6 3.9720 -1.4683 2.9450 19 6 5.1069 -1.8586 3.6306 20 6 5.7964 -0.9448 4.4060 21 6 5.3503 0.3618 4.4965 22 9 6.0238 1.2554 5.2535 23 6 4.2147 0.7549 3.8038 24 9 3.7807 2.0317 3.8858 25 1 -0.3633 -1.0219 0.1088 26 1 -0.3634 0.6052 0.8305 27 1 -0.3634 0.4167 -0.9394 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1370 30 1 6.0256 -1.5079 -3.1483 31 1 1.3706 -1.4060 1.4954 32 1 0.8817 -0.7268 3.5876 33 1 1.3307 0.9172 4.1014 34 1 0.2210 0.6855 2.7291 35 1 3.4345 -2.1835 2.3401 36 1 5.4553 -2.8784 3.5606 37 1 6.6832 -1.2509 4.9409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276364532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = -88.023363 kcal Electronic energy + Delta-G solvation = -20807.533631 eV Core-core repulsion = 17412.780883 eV Total energy + Delta-G solvation = -3394.752748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.48024 -49.57058 -40.29540 -38.39237 -35.28386 -33.93605 -31.27948 -30.95540 -29.59919 -28.94848 -24.96723 -24.61051 -23.67352 -21.92536 -21.39881 -18.90459 -18.72498 -18.15367 -17.86371 -17.32156 -16.55230 -16.08809 -16.02747 -15.84551 -15.58759 -15.39926 -15.13206 -14.65015 -14.25360 -13.92845 -13.76625 -13.69429 -13.48670 -13.32829 -12.95823 -12.78541 -12.63714 -12.36991 -12.29761 -12.12719 -11.93428 -11.58182 -11.28408 -11.04481 -10.63132 -9.76714 -9.66729 -9.08851 -8.12297 -6.10833 0.01464 0.11070 1.40979 1.42584 1.53688 2.46407 2.48246 2.79227 3.19151 3.28803 3.43877 3.62425 3.96486 4.01088 4.11456 4.24322 4.31595 4.33209 4.44616 4.58347 4.64834 4.87026 4.92523 4.95436 5.01995 5.08514 5.14296 5.20433 5.29021 5.31953 5.39313 5.44160 5.59510 5.81424 5.87312 6.32246 6.52133 6.78500 6.97645 7.49679 9.05111 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.006040 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.928611 B = 4634.655511 C = 5518.016451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.046 0.954 4 C -0.002 4.002 5 C -0.484 4.484 6 H 0.029 0.971 7 C -0.005 4.005 8 N -0.960 5.960 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.244 1.244 13 N -0.669 5.669 14 C 0.128 3.872 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.082 4.082 18 C -0.074 4.074 19 C -0.098 4.098 20 C -0.128 4.128 21 C 0.042 3.958 22 F -0.142 7.142 23 C 0.039 3.961 24 F -0.143 7.143 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.349 0.651 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.168 0.832 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -2.059 13.967 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 H 0.064 0.936 4 C -0.040 4.040 5 C -0.523 4.523 6 H 0.048 0.952 7 C -0.199 4.199 8 N -0.603 5.603 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.167 1.167 13 N -0.301 5.301 14 C 0.017 3.983 15 H 0.080 0.920 16 C -0.219 4.219 17 C -0.083 4.083 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.146 4.146 21 C 0.022 3.978 22 F -0.120 7.120 23 C 0.018 3.982 24 F -0.121 7.121 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.169 0.831 36 H 0.185 0.815 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.656 -2.037 13.680 15.809 hybrid contribution -0.359 0.696 -0.464 0.910 sum -8.015 -1.341 13.216 15.515 Atomic orbital electron populations 1.22482 0.95239 1.02651 1.02456 1.21431 0.92887 0.96018 0.90270 0.93551 1.19591 0.94228 0.96395 0.93801 1.21274 0.92208 1.32017 1.06770 0.95239 1.25946 0.95448 0.97734 1.00795 1.70101 1.08531 1.48182 1.33498 0.85737 0.79401 0.78511 0.79305 1.20113 1.21879 1.16750 1.60203 1.52052 1.14071 1.03725 1.20294 0.91765 0.95080 0.91160 0.92024 1.22394 0.96908 1.03457 0.99168 1.20071 0.98116 0.93768 0.96384 1.21265 0.96470 0.95089 0.96419 1.21508 0.94092 1.01316 0.94622 1.21363 1.02147 0.89794 1.01331 1.17872 0.93153 0.89399 0.97407 1.91464 1.79123 1.67636 1.73822 1.17767 0.96700 0.79985 1.03718 1.91436 1.89328 1.36166 1.95205 0.91346 0.91634 0.92107 0.95851 0.96699 0.93264 0.83053 0.90396 0.92384 0.90731 0.83136 0.81455 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 9.24 71.98 0.66 -3.72 16 2 C 0.10 3.67 2.60 44.91 0.12 3.79 16 3 H 0.05 1.83 7.15 -2.38 -0.02 1.82 16 4 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 5 C -0.48 -27.36 9.39 25.60 0.24 -27.12 16 6 H 0.03 1.89 7.99 -2.92 -0.02 1.86 16 7 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 8 N -0.96 -61.06 13.96 21.45 0.30 -60.76 16 9 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 13 N -0.67 -21.65 4.44 -473.33 -2.10 -23.75 16 14 C 0.13 3.87 2.64 44.17 0.12 3.99 16 15 H 0.06 2.17 6.91 -2.39 -0.02 2.15 16 16 C -0.16 -3.58 9.17 71.98 0.66 -2.92 16 17 C -0.08 -2.60 5.09 -19.83 -0.10 -2.70 16 18 C -0.07 -2.18 9.33 22.27 0.21 -1.97 16 19 C -0.10 -2.40 10.04 22.27 0.22 -2.18 16 20 C -0.13 -3.19 10.02 22.31 0.22 -2.96 16 21 C 0.04 1.28 7.31 22.41 0.16 1.44 16 22 F -0.14 -4.45 17.18 44.97 0.77 -3.68 16 23 C 0.04 1.29 7.25 22.41 0.16 1.45 16 24 F -0.14 -4.96 16.57 44.97 0.75 -4.21 16 25 H 0.07 1.58 8.00 -2.39 -0.02 1.56 16 26 H 0.06 1.43 6.59 -2.39 -0.02 1.41 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 29 H 0.01 0.65 7.57 -2.38 -0.02 0.63 16 30 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 31 H 0.35 9.23 7.72 -89.70 -0.69 8.54 16 32 H 0.08 1.48 8.02 -2.39 -0.02 1.46 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.47 6.59 -2.39 -0.02 1.46 16 35 H 0.15 4.36 7.13 -2.91 -0.02 4.34 16 36 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -68.84 313.20 5.19 -63.65 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.33 Total: 15.22 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.25 Total: -32.72 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.80 Total: -84.51 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 1.52 Total: -7.89 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -68.84 5.19 -63.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276364532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.372 kcal (2) G-P(sol) polarization free energy of solvation -68.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds