Wall clock time and date at job start Mon Mar 30 2020 00:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46946 * 2 1 4 4 N 1.46499 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00276 * 265.53068 * 4 3 2 6 6 H 1.07995 * 120.00267 * 145.61197 * 5 4 3 7 7 C 1.38954 * 119.99525 * 325.60700 * 5 4 3 8 8 N 1.31410 * 120.00391 * 338.48794 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 158.48725 * 7 5 4 10 10 H 1.48503 * 109.46861 * 60.00025 * 9 7 5 11 11 H 1.48492 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47227 * 300.00372 * 9 7 5 13 13 C 1.34778 * 119.99943 * 85.52256 * 4 3 2 14 14 O 1.21300 * 119.99796 * 0.02562 * 13 4 3 15 15 C 1.50698 * 120.00169 * 180.02562 * 13 4 3 16 16 H 1.08999 * 112.85121 * 311.20170 * 15 13 4 17 17 C 1.53784 * 113.68848 * 82.46721 * 15 13 4 18 18 C 1.53784 * 87.08037 * 139.99207 * 17 15 13 19 19 C 1.53782 * 87.08143 * 334.56728 * 18 17 15 20 20 H 1.08994 * 113.61513 * 270.88168 * 19 18 17 21 21 C 1.50701 * 113.68788 * 139.98809 * 19 18 17 22 22 O 1.20819 * 119.99981 * 260.93416 * 21 19 18 23 23 O 1.34234 * 119.99599 * 80.94066 * 21 19 18 24 24 C 1.45200 * 116.99663 * 179.97438 * 23 21 19 25 25 H 1.09007 * 109.47365 * 59.99970 * 1 2 3 26 26 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47320 * 299.99925 * 1 2 3 28 28 H 1.09000 * 109.46994 * 240.00230 * 2 1 3 29 29 H 1.08993 * 109.47236 * 119.99957 * 2 1 3 30 30 H 1.09000 * 109.47087 * 60.00287 * 3 2 1 31 31 H 1.08999 * 109.47427 * 300.00317 * 3 2 1 32 32 H 0.96998 * 119.99777 * 179.97438 * 8 7 5 33 33 H 1.09003 * 113.61687 * 254.54180 * 17 15 13 34 34 H 1.09002 * 113.61549 * 25.35929 * 17 15 13 35 35 H 1.08999 * 113.61645 * 220.02061 * 18 17 15 36 36 H 1.09000 * 113.61374 * 89.11556 * 18 17 15 37 37 H 1.09002 * 109.47121 * 59.99823 * 24 23 21 38 38 H 1.08999 * 109.46637 * 179.97438 * 24 23 21 39 39 H 1.09001 * 109.47126 * 299.99259 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.5354 1.1845 6 1 5.1284 1.0152 1.3076 7 6 3.6769 2.2988 2.2260 8 7 2.8019 3.2470 1.9767 9 14 4.2309 1.9771 3.9808 10 1 5.6993 2.1752 4.0804 11 1 3.5406 2.9188 4.8983 12 1 3.8929 0.5814 4.3587 13 6 4.1793 1.3514 -1.1627 14 8 3.5732 1.2696 -2.2103 15 6 5.6863 1.3509 -1.1621 16 1 6.1096 2.1558 -0.5613 17 6 6.3036 -0.0267 -0.8689 18 6 7.3499 0.3000 -1.9475 19 6 6.3029 1.2409 -2.5666 20 1 5.6521 0.7529 -3.2922 21 6 6.8793 2.5368 -3.0760 22 8 6.8028 3.5376 -2.4035 23 8 7.4776 2.5790 -4.2769 24 6 8.0094 3.8610 -4.7036 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 2.4435 3.7796 2.7038 33 1 6.7224 -0.1132 0.1337 34 1 5.6524 -0.8613 -1.1290 35 1 7.6030 -0.5495 -2.5819 36 1 8.2280 0.8176 -1.5614 37 1 8.7610 4.1983 -3.9898 38 1 8.4651 3.7557 -5.6881 39 1 7.2016 4.5912 -4.7530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285162230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:09 Heat of formation + Delta-G solvation = -106.988021 kcal Electronic energy + Delta-G solvation = -21567.708334 eV Core-core repulsion = 18283.220733 eV Total energy + Delta-G solvation = -3284.487601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56430 -38.99785 -37.08668 -35.91517 -34.89795 -32.76212 -31.24276 -28.41817 -26.85318 -25.97705 -25.40300 -24.00989 -21.35635 -20.85677 -19.52220 -18.72303 -17.71825 -16.89547 -16.62735 -16.00269 -15.67144 -14.64767 -14.56301 -14.04743 -13.97255 -13.57879 -13.40131 -13.12000 -12.69825 -12.47370 -12.17821 -11.89493 -11.56926 -11.48888 -11.36961 -11.26865 -11.09151 -10.91811 -10.65538 -10.59941 -10.49396 -10.32308 -10.25122 -10.10111 -9.85132 -9.71195 -9.04004 -8.34457 -7.49579 -6.35341 -4.02237 2.54860 2.99270 3.12924 3.21766 3.23116 3.85960 4.12062 4.69353 4.79221 4.85045 5.00364 5.11940 5.20073 5.27292 5.37801 5.43390 5.65180 5.81104 5.83991 5.89083 6.02948 6.05748 6.15035 6.28546 6.35852 6.41140 6.54917 6.59234 6.63528 6.71721 6.84882 6.87150 7.15265 7.39707 7.53172 7.95591 8.09736 8.40112 9.09291 9.54940 9.97872 10.65934 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.006313 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.150814 B = 4434.100392 C = 5107.488983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.112 3.888 4 N -0.431 5.431 5 C -0.338 4.338 6 H 0.092 0.908 7 C 0.043 3.957 8 N -0.857 5.857 9 Si 0.913 3.087 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.476 3.524 14 O -0.609 6.609 15 C -0.088 4.088 16 H 0.121 0.879 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.092 4.092 20 H 0.133 0.867 21 C 0.472 3.528 22 O -0.499 6.499 23 O -0.362 6.362 24 C 0.034 3.966 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -4.498 -5.321 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.011 4.011 4 N -0.148 5.148 5 C -0.466 4.466 6 H 0.110 0.890 7 C -0.163 4.163 8 N -0.493 5.493 9 Si 0.739 3.261 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.265 3.735 14 O -0.496 6.496 15 C -0.109 4.109 16 H 0.139 0.861 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.112 4.112 20 H 0.151 0.849 21 C 0.314 3.686 22 O -0.386 6.386 23 O -0.279 6.279 24 C -0.060 4.060 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.283 -4.029 -5.495 9.268 hybrid contribution 0.249 0.326 0.951 1.036 sum 6.532 -3.703 -4.544 8.776 Atomic orbital electron populations 1.21655 0.96654 1.00365 1.01381 1.21825 0.94663 0.99497 1.01200 1.21476 0.81504 0.94496 1.03638 1.43421 1.04716 1.61844 1.04800 1.19424 1.07620 1.29636 0.89937 0.89042 1.25345 0.97048 0.93531 1.00413 1.69932 1.29960 1.16438 1.32977 0.86227 0.79078 0.78451 0.82324 1.19703 1.20934 1.19789 1.20037 0.88613 0.81019 0.83824 1.90503 1.70123 1.57092 1.31880 1.22403 0.94919 0.99819 0.93751 0.86072 1.22721 0.97043 0.96677 0.99239 1.22836 0.96549 0.98408 0.98046 1.22561 0.98932 0.91115 0.98556 0.84941 1.23832 0.74599 0.91551 0.78586 1.90674 1.54205 1.36545 1.57130 1.86528 1.68569 1.36460 1.36391 1.23196 0.98884 0.83731 1.00189 0.93180 0.93676 0.93009 0.92969 0.92382 0.87435 0.93133 0.91981 0.90110 0.89660 0.90234 0.89796 0.92182 0.88518 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.76 6.23 -26.73 -0.17 -2.93 16 3 C 0.11 2.74 4.91 -4.04 -0.02 2.72 16 4 N -0.43 -10.97 2.55 -114.81 -0.29 -11.27 16 5 C -0.34 -8.54 8.56 -14.93 -0.13 -8.67 16 6 H 0.09 2.17 6.54 -52.49 -0.34 1.82 16 7 C 0.04 1.08 4.94 -17.47 -0.09 0.99 16 8 N -0.86 -22.91 11.31 55.50 0.63 -22.29 16 9 Si 0.91 19.41 29.60 -169.99 -5.03 14.38 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.48 11.77 7.14 -10.99 -0.08 11.69 16 14 O -0.61 -16.22 15.56 5.54 0.09 -16.14 16 15 C -0.09 -1.80 2.19 -90.96 -0.20 -2.00 16 16 H 0.12 2.70 7.19 -51.93 -0.37 2.33 16 17 C -0.12 -1.92 7.08 -25.92 -0.18 -2.10 16 18 C -0.12 -1.67 7.63 -25.92 -0.20 -1.87 16 19 C -0.09 -1.63 3.58 -90.96 -0.33 -1.96 16 20 H 0.13 2.39 7.43 -51.93 -0.39 2.00 16 21 C 0.47 8.70 7.49 36.01 0.27 8.97 16 22 O -0.50 -10.78 15.66 -18.74 -0.29 -11.07 16 23 O -0.36 -5.67 10.57 -39.27 -0.41 -6.08 16 24 C 0.03 0.41 10.56 101.05 1.07 1.48 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 2.77 5.34 -51.93 -0.28 2.49 16 31 H 0.05 1.30 7.56 -51.93 -0.39 0.90 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 34 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -31.00 326.46 -6.04 -37.04 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.96 Total: 6.24 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 0.32 Total: 4.26 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.33 Total: -33.55 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.62 Total: -33.29 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.00 -6.04 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285162230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.948 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds