Wall clock time and date at job start Mon Mar 30 2020 00:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46946 * 2 1 4 4 N 1.46499 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00276 * 265.53068 * 4 3 2 6 6 H 1.07995 * 120.00267 * 145.61197 * 5 4 3 7 7 C 1.38954 * 119.99525 * 325.60700 * 5 4 3 8 8 N 1.31410 * 120.00391 * 338.48794 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 158.48725 * 7 5 4 10 10 H 1.48503 * 109.46861 * 60.00025 * 9 7 5 11 11 H 1.48492 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47227 * 300.00372 * 9 7 5 13 13 C 1.34778 * 119.99943 * 85.52256 * 4 3 2 14 14 O 1.21300 * 119.99796 * 0.02562 * 13 4 3 15 15 C 1.50698 * 120.00169 * 180.02562 * 13 4 3 16 16 H 1.08999 * 112.85121 * 311.20170 * 15 13 4 17 17 C 1.53784 * 113.68848 * 82.46721 * 15 13 4 18 18 C 1.53784 * 87.08037 * 139.99207 * 17 15 13 19 19 C 1.53782 * 87.08143 * 334.56728 * 18 17 15 20 20 H 1.08994 * 113.61513 * 270.88168 * 19 18 17 21 21 C 1.50701 * 113.68788 * 139.98809 * 19 18 17 22 22 O 1.20819 * 119.99981 * 260.93416 * 21 19 18 23 23 O 1.34234 * 119.99599 * 80.94066 * 21 19 18 24 24 C 1.45200 * 116.99663 * 179.97438 * 23 21 19 25 25 H 1.09007 * 109.47365 * 59.99970 * 1 2 3 26 26 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47320 * 299.99925 * 1 2 3 28 28 H 1.09000 * 109.46994 * 240.00230 * 2 1 3 29 29 H 1.08993 * 109.47236 * 119.99957 * 2 1 3 30 30 H 1.09000 * 109.47087 * 60.00287 * 3 2 1 31 31 H 1.08999 * 109.47427 * 300.00317 * 3 2 1 32 32 H 0.96998 * 119.99777 * 179.97438 * 8 7 5 33 33 H 1.09003 * 113.61687 * 254.54180 * 17 15 13 34 34 H 1.09002 * 113.61549 * 25.35929 * 17 15 13 35 35 H 1.08999 * 113.61645 * 220.02061 * 18 17 15 36 36 H 1.09000 * 113.61374 * 89.11556 * 18 17 15 37 37 H 1.09002 * 109.47121 * 59.99823 * 24 23 21 38 38 H 1.08999 * 109.46637 * 179.97438 * 24 23 21 39 39 H 1.09001 * 109.47126 * 299.99259 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.5354 1.1845 6 1 5.1284 1.0152 1.3076 7 6 3.6769 2.2988 2.2260 8 7 2.8019 3.2470 1.9767 9 14 4.2309 1.9771 3.9808 10 1 5.6993 2.1752 4.0804 11 1 3.5406 2.9188 4.8983 12 1 3.8929 0.5814 4.3587 13 6 4.1793 1.3514 -1.1627 14 8 3.5732 1.2696 -2.2103 15 6 5.6863 1.3509 -1.1621 16 1 6.1096 2.1558 -0.5613 17 6 6.3036 -0.0267 -0.8689 18 6 7.3499 0.3000 -1.9475 19 6 6.3029 1.2409 -2.5666 20 1 5.6521 0.7529 -3.2922 21 6 6.8793 2.5368 -3.0760 22 8 6.8028 3.5376 -2.4035 23 8 7.4776 2.5790 -4.2769 24 6 8.0094 3.8610 -4.7036 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 2.4435 3.7796 2.7038 33 1 6.7224 -0.1132 0.1337 34 1 5.6524 -0.8613 -1.1290 35 1 7.6030 -0.5495 -2.5819 36 1 8.2280 0.8176 -1.5614 37 1 8.7610 4.1983 -3.9898 38 1 8.4651 3.7557 -5.6881 39 1 7.2016 4.5912 -4.7530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285162230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:08 Heat of formation + Delta-G solvation = -124.977627 kcal Electronic energy + Delta-G solvation = -21568.488422 eV Core-core repulsion = 18283.220733 eV Total energy + Delta-G solvation = -3285.267689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.02236 -40.65634 -38.64698 -37.35394 -36.81978 -34.50693 -33.15695 -29.64493 -28.42519 -27.30501 -27.13601 -25.69684 -22.70042 -22.51150 -21.24604 -20.34469 -19.26452 -18.54336 -18.07511 -17.45110 -17.31331 -16.52833 -16.30211 -15.62199 -15.57450 -15.12106 -15.00258 -14.41190 -14.12862 -13.91782 -13.79032 -13.26050 -13.20813 -13.05977 -12.95672 -12.75721 -12.62819 -12.46894 -12.34991 -12.12664 -12.00613 -11.93068 -11.83392 -11.52056 -11.44899 -11.25942 -10.93682 -10.25046 -9.47635 -8.28666 -6.02126 1.11552 1.43532 1.49074 1.58055 1.73894 2.00176 2.33539 2.98044 3.09049 3.37136 3.55918 3.81182 3.93427 4.13388 4.19528 4.29404 4.30474 4.32384 4.46883 4.60240 4.66108 4.69855 4.76032 4.80693 4.90730 4.97519 5.05118 5.06962 5.09330 5.21981 5.30721 5.36709 5.43061 5.48223 5.59219 6.02687 6.44486 6.70836 7.13251 7.60687 8.03854 8.73921 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.006313 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.150814 B = 4434.100392 C = 5107.488983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.112 3.888 4 N -0.445 5.445 5 C -0.351 4.351 6 H 0.106 0.894 7 C -0.003 4.003 8 N -0.896 5.896 9 Si 0.984 3.016 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.461 3.539 14 O -0.639 6.639 15 C -0.101 4.101 16 H 0.099 0.901 17 C -0.109 4.109 18 C -0.093 4.093 19 C -0.096 4.096 20 H 0.128 0.872 21 C 0.473 3.527 22 O -0.541 6.541 23 O -0.358 6.358 24 C 0.025 3.975 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.023 0.977 32 H 0.271 0.729 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -6.285 -5.035 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.012 4.012 4 N -0.161 5.161 5 C -0.478 4.478 6 H 0.123 0.877 7 C -0.206 4.206 8 N -0.534 5.534 9 Si 0.807 3.193 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.186 1.186 13 C 0.252 3.748 14 O -0.528 6.528 15 C -0.122 4.122 16 H 0.117 0.883 17 C -0.147 4.147 18 C -0.130 4.130 19 C -0.116 4.116 20 H 0.146 0.854 21 C 0.318 3.682 22 O -0.431 6.431 23 O -0.274 6.274 24 C -0.068 4.068 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.974 -5.838 -5.230 11.181 hybrid contribution -0.286 0.978 0.745 1.262 sum 7.687 -4.860 -4.485 10.140 Atomic orbital electron populations 1.21615 0.93777 1.02404 1.01574 1.21694 0.97138 0.96527 1.00622 1.21452 0.81707 0.96602 1.01446 1.43723 1.05133 1.61828 1.05411 1.19833 1.08250 1.29815 0.89939 0.87677 1.26272 0.97026 0.92895 1.04359 1.70056 1.31535 1.17590 1.34181 0.85137 0.78867 0.78502 0.76809 1.18748 1.21237 1.18617 1.20854 0.90626 0.80175 0.83188 1.90458 1.71301 1.58352 1.32707 1.22433 0.91747 1.01955 0.96115 0.88341 1.22733 0.97245 0.93723 1.00994 1.22806 0.95270 0.98256 0.96670 1.22620 1.00211 0.91774 0.96974 0.85419 1.23995 0.74064 0.91169 0.78964 1.90657 1.56074 1.37878 1.58464 1.86509 1.67921 1.38285 1.34703 1.23573 0.98683 0.82105 1.02417 0.93192 0.90655 0.92664 0.93930 0.92314 0.88871 0.95832 0.91953 0.88782 0.89456 0.86558 0.88394 0.91681 0.84256 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.91 71.98 0.71 -3.83 16 2 C -0.12 -5.06 6.23 30.59 0.19 -4.87 16 3 C 0.11 5.66 4.91 86.38 0.42 6.08 16 4 N -0.44 -23.30 2.55 -635.53 -1.62 -24.92 16 5 C -0.35 -17.89 8.56 84.04 0.72 -17.17 16 6 H 0.11 4.93 6.54 -2.91 -0.02 4.91 16 7 C 0.00 -0.16 4.94 84.93 0.42 0.26 16 8 N -0.90 -49.19 11.31 21.66 0.24 -48.95 16 9 Si 0.98 39.49 29.60 68.60 2.03 41.52 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 13 C 0.46 23.50 7.14 87.66 0.63 24.12 16 14 O -0.64 -35.32 15.56 -3.09 -0.05 -35.37 16 15 C -0.10 -4.18 2.19 -11.01 -0.02 -4.20 16 16 H 0.10 4.51 7.19 -2.39 -0.02 4.49 16 17 C -0.11 -3.31 7.08 31.12 0.22 -3.09 16 18 C -0.09 -2.29 7.63 31.12 0.24 -2.05 16 19 C -0.10 -3.34 3.58 -11.01 -0.04 -3.38 16 20 H 0.13 4.57 7.43 -2.39 -0.02 4.55 16 21 C 0.47 17.34 7.49 71.24 0.53 17.88 16 22 O -0.54 -23.86 15.66 21.98 0.34 -23.51 16 23 O -0.36 -10.68 10.57 -51.45 -0.54 -11.23 16 24 C 0.03 0.57 10.56 113.37 1.20 1.76 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 5.00 5.34 -2.39 -0.01 4.98 16 31 H 0.02 1.27 7.56 -2.39 -0.02 1.25 16 32 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.09 2.60 7.86 -2.39 -0.02 2.58 16 34 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 35 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.10 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 Total: -1.00 -70.09 326.46 6.66 -63.43 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.03 Total: 27.52 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.22 Total: 11.51 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.38 Total: -73.87 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: -0.25 Total: -70.11 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -70.09 6.66 -63.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285162230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.547 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds