Wall clock time and date at job start Mon Mar 30 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 N 1.46498 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00274 * 95.59136 * 4 3 2 6 6 H 1.08005 * 120.00003 * 220.80703 * 5 4 3 7 7 C 1.38949 * 120.00584 * 40.80660 * 5 4 3 8 8 N 1.31417 * 119.99562 * 13.47319 * 7 5 4 9 9 Si 1.86798 * 120.00415 * 193.47503 * 7 5 4 10 10 H 1.48500 * 109.47223 * 90.00024 * 9 7 5 11 11 H 1.48501 * 109.47342 * 209.99645 * 9 7 5 12 12 H 1.48498 * 109.47073 * 329.99800 * 9 7 5 13 13 C 1.34782 * 119.99909 * 275.58377 * 4 3 2 14 14 O 1.21286 * 119.99654 * 0.02562 * 13 4 3 15 15 C 1.50693 * 119.99959 * 180.02562 * 13 4 3 16 16 H 1.09003 * 112.85199 * 27.52964 * 15 13 4 17 17 C 1.53787 * 113.61242 * 158.72663 * 15 13 4 18 18 C 1.54056 * 86.98369 * 89.16068 * 17 15 13 19 19 C 1.53776 * 87.07766 * 25.43024 * 18 17 15 20 20 H 1.09007 * 113.61386 * 89.12044 * 19 18 17 21 21 C 1.50701 * 113.69037 * 220.01094 * 19 18 17 22 22 O 1.20827 * 119.99942 * 4.31454 * 21 19 18 23 23 O 1.34228 * 119.99738 * 184.32146 * 21 19 18 24 24 C 1.45202 * 116.99581 * 179.97438 * 23 21 19 25 25 H 1.09001 * 109.46915 * 300.00184 * 1 2 3 26 26 H 1.09000 * 109.47523 * 60.00286 * 1 2 3 27 27 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46915 * 239.99816 * 2 1 3 29 29 H 1.09004 * 109.47036 * 119.99729 * 2 1 3 30 30 H 1.09004 * 109.46980 * 299.99764 * 3 2 1 31 31 H 1.08998 * 109.47507 * 59.99357 * 3 2 1 32 32 H 0.97003 * 119.99683 * 180.02562 * 8 7 5 33 33 H 1.09002 * 113.61236 * 203.66391 * 17 15 13 34 34 H 1.09001 * 113.61261 * 334.56317 * 17 15 13 35 35 H 1.08994 * 113.60787 * 270.88447 * 18 17 15 36 36 H 1.09003 * 113.69176 * 139.99022 * 18 17 15 37 37 H 1.08999 * 109.47324 * 59.99835 * 24 23 21 38 38 H 1.09002 * 109.47139 * 180.02562 * 24 23 21 39 39 H 1.09000 * 109.47104 * 299.99671 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.5583 -1.1825 6 1 5.0730 0.9611 -1.3556 7 6 3.7483 2.4441 -2.1577 8 7 2.8478 3.3536 -1.8598 9 14 4.4345 2.3420 -3.8921 10 1 3.5974 1.4210 -4.7022 11 1 4.4234 3.6927 -4.5091 12 1 5.8280 1.8312 -3.8438 13 6 4.1793 1.3287 1.1608 14 8 3.5732 1.2259 2.2063 15 6 5.6863 1.3293 1.1602 16 1 6.1090 1.8785 0.3189 17 6 6.3026 1.7101 2.5168 18 6 6.2502 0.2113 2.8694 19 6 6.3028 -0.0656 1.3577 20 1 7.3158 -0.1548 0.9651 21 6 5.4031 -1.1912 0.9166 22 8 4.6715 -1.7279 1.7145 23 8 5.4146 -1.5976 -0.3626 24 6 4.5224 -2.6873 -0.7161 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 2.5391 3.9718 -2.5407 33 1 7.3155 2.1055 2.4405 34 1 5.6511 2.3285 3.1342 35 1 5.3144 -0.0946 3.3370 36 1 7.1286 -0.1426 3.4090 37 1 3.4926 -2.3948 -0.5109 38 1 4.6311 -2.9166 -1.7761 39 1 4.7741 -3.5688 -0.1264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285162231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:11 Heat of formation + Delta-G solvation = -103.966608 kcal Electronic energy + Delta-G solvation = -22630.103411 eV Core-core repulsion = 19345.746828 eV Total energy + Delta-G solvation = -3284.356583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56759 -38.84734 -36.98253 -35.68425 -34.74703 -32.78613 -31.21771 -28.19261 -26.77170 -25.84046 -25.35554 -24.00990 -21.33264 -20.83971 -19.73632 -18.59887 -17.51797 -16.62696 -16.21199 -15.92230 -15.44506 -14.91074 -14.36131 -14.17924 -13.84625 -13.58989 -13.44361 -12.85236 -12.58100 -12.42237 -12.23241 -11.71642 -11.50975 -11.45693 -11.29771 -11.22639 -10.98356 -10.83117 -10.63175 -10.51090 -10.31911 -10.24453 -10.23088 -9.87948 -9.73902 -9.66855 -9.03662 -8.37084 -7.43162 -6.34228 -4.10985 2.72810 3.10797 3.20404 3.21774 3.22966 3.77406 4.09556 4.64912 4.85221 4.94821 5.10840 5.33244 5.43243 5.45850 5.47775 5.57800 5.80751 5.84605 5.86923 5.92566 6.01215 6.12874 6.32724 6.40193 6.46585 6.51833 6.54217 6.57885 6.72010 6.87086 6.88271 6.90248 7.15183 7.39625 7.53109 8.00751 8.29387 8.41215 9.08856 9.52921 9.97223 10.66955 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.009076 C = 0.008428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.721734 B = 3084.297694 C = 3321.656148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.433 5.433 5 C -0.333 4.333 6 H 0.091 0.909 7 C 0.043 3.957 8 N -0.864 5.864 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.481 3.519 14 O -0.590 6.590 15 C -0.098 4.098 16 H 0.109 0.891 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.099 4.099 20 H 0.120 0.880 21 C 0.472 3.528 22 O -0.502 6.502 23 O -0.350 6.350 24 C 0.039 3.961 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -5.930 0.358 7.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.150 5.150 5 C -0.461 4.461 6 H 0.109 0.891 7 C -0.163 4.163 8 N -0.501 5.501 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.269 3.731 14 O -0.475 6.475 15 C -0.120 4.120 16 H 0.127 0.873 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.118 4.118 20 H 0.138 0.862 21 C 0.315 3.685 22 O -0.388 6.388 23 O -0.266 6.266 24 C -0.055 4.055 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.338 -5.996 0.965 7.463 hybrid contribution 0.155 -0.162 -1.225 1.246 sum 4.494 -6.157 -0.260 7.627 Atomic orbital electron populations 1.21643 0.96602 1.00346 1.01348 1.21853 0.94722 0.99680 1.01087 1.21399 0.81574 0.94135 1.03317 1.43381 1.04621 1.62204 1.04824 1.19497 1.12126 1.21860 0.92651 0.89119 1.25452 0.96738 0.93789 1.00275 1.69876 1.30036 1.16057 1.34143 0.86112 0.79685 0.77560 0.82454 1.20329 1.20982 1.19146 1.19794 0.87983 0.81331 0.84039 1.90529 1.69808 1.55359 1.31841 1.22224 0.95425 0.94060 1.00250 0.87283 1.22751 1.00389 0.96640 0.96227 1.22975 1.03626 0.96130 0.92364 1.22522 0.98704 0.91294 0.99322 0.86213 1.23524 0.82004 0.82865 0.80098 1.90625 1.39161 1.55008 1.54048 1.86530 1.60048 1.50262 1.29779 1.23150 0.93957 0.87517 1.00876 0.93141 0.93018 0.93741 0.92791 0.92815 0.87679 0.93225 0.92089 0.89908 0.90060 0.87629 0.91463 0.91907 0.88606 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.91 37.16 0.37 -2.15 16 2 C -0.13 -2.92 6.22 -26.73 -0.17 -3.08 16 3 C 0.12 2.93 4.86 -4.04 -0.02 2.91 16 4 N -0.43 -10.91 2.52 -114.81 -0.29 -11.20 16 5 C -0.33 -8.29 8.13 -14.93 -0.12 -8.41 16 6 H 0.09 2.20 7.29 -52.48 -0.38 1.82 16 7 C 0.04 1.07 5.07 -17.47 -0.09 0.98 16 8 N -0.86 -22.57 11.29 55.50 0.63 -21.94 16 9 Si 0.92 19.19 29.57 -169.99 -5.03 14.17 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.48 11.78 5.70 -10.99 -0.06 11.72 16 14 O -0.59 -15.82 14.92 5.55 0.08 -15.74 16 15 C -0.10 -1.96 3.40 -90.96 -0.31 -2.27 16 16 H 0.11 2.16 7.00 -51.93 -0.36 1.80 16 17 C -0.12 -2.04 7.45 -25.77 -0.19 -2.23 16 18 C -0.11 -1.91 7.04 -25.78 -0.18 -2.09 16 19 C -0.10 -1.73 4.21 -90.96 -0.38 -2.11 16 20 H 0.12 1.67 8.14 -51.92 -0.42 1.25 16 21 C 0.47 9.42 6.25 36.01 0.23 9.64 16 22 O -0.50 -11.19 15.64 -18.75 -0.29 -11.48 16 23 O -0.35 -6.55 10.57 -39.25 -0.41 -6.97 16 24 C 0.04 0.61 10.56 101.05 1.07 1.67 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.11 2.70 5.55 -51.93 -0.29 2.41 16 31 H 0.05 1.28 7.60 -51.93 -0.39 0.89 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16 35 H 0.11 2.13 6.63 -51.93 -0.34 1.79 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.07 8.13 -51.93 -0.42 0.64 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -30.51 324.34 -6.25 -36.76 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.96 Total: 6.93 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.14 Total: 4.58 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.34 Total: -33.14 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.63 Total: -34.19 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.51 -6.25 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285162231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.202 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds