Wall clock time and date at job start Mon Mar 30 2020 00:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 N 1.46504 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99865 * 96.33927 * 4 3 2 6 6 H 1.07997 * 120.00365 * 219.68400 * 5 4 3 7 7 C 1.38955 * 120.00066 * 39.68387 * 5 4 3 8 8 N 1.31409 * 119.99824 * 209.65084 * 7 5 4 9 9 Si 1.86799 * 119.99897 * 29.65364 * 7 5 4 10 10 H 1.48494 * 109.47069 * 94.89201 * 9 7 5 11 11 H 1.48506 * 109.46779 * 214.88842 * 9 7 5 12 12 H 1.48495 * 109.47112 * 334.88786 * 9 7 5 13 13 C 1.34777 * 120.00181 * 276.33748 * 4 3 2 14 14 O 1.21292 * 119.99685 * 6.38915 * 13 4 3 15 15 C 1.50696 * 119.99884 * 186.39447 * 13 4 3 16 16 H 1.08996 * 112.85288 * 342.95871 * 15 13 4 17 17 C 1.53782 * 113.61373 * 211.75865 * 15 13 4 18 18 C 1.53780 * 87.08394 * 270.88780 * 17 15 13 19 19 C 1.53787 * 113.61296 * 114.15394 * 15 13 4 20 20 H 1.09004 * 113.61095 * 203.66002 * 19 15 13 21 21 C 1.50693 * 113.61539 * 334.56498 * 19 15 13 22 22 O 1.20827 * 120.00113 * 350.78196 * 21 19 15 23 23 O 1.34231 * 120.00030 * 170.77665 * 21 19 15 24 24 C 1.45196 * 116.99912 * 179.97438 * 23 21 19 25 25 H 1.08999 * 109.47239 * 59.99834 * 1 2 3 26 26 H 1.09004 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47094 * 299.99947 * 1 2 3 28 28 H 1.09008 * 109.47324 * 120.00133 * 2 1 3 29 29 H 1.09000 * 109.47417 * 239.99646 * 2 1 3 30 30 H 1.08999 * 109.47195 * 300.00192 * 3 2 1 31 31 H 1.09003 * 109.47089 * 60.00050 * 3 2 1 32 32 H 0.97007 * 119.99794 * 180.02562 * 8 7 5 33 33 H 1.09009 * 113.61357 * 25.43041 * 17 15 13 34 34 H 1.08995 * 113.61620 * 156.24887 * 17 15 13 35 35 H 1.08998 * 113.62120 * 89.11527 * 18 17 15 36 36 H 1.09002 * 113.61567 * 219.93938 * 18 17 15 37 37 H 1.08995 * 109.47556 * 300.00210 * 24 23 21 38 38 H 1.08998 * 109.47066 * 60.00752 * 24 23 21 39 39 H 1.09005 * 109.47006 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5734 -1.1791 6 1 5.0843 0.9917 -1.3518 7 6 3.7367 2.4545 -2.1528 8 7 3.9688 2.2073 -3.4224 9 14 2.7963 3.9905 -1.6570 10 1 3.7359 5.1362 -1.5593 11 1 1.7589 4.2867 -2.6776 12 1 2.1464 3.7695 -0.3403 13 6 4.1784 1.3138 1.1610 14 8 3.5772 1.0822 2.1886 15 6 5.6784 1.4578 1.1816 16 1 6.1259 1.3682 0.1918 17 6 6.3658 0.5905 2.2493 18 6 6.1855 1.7742 3.2142 19 6 6.1687 2.6834 1.9706 20 1 7.1575 3.0295 1.6694 21 6 5.1559 3.7965 2.0478 22 8 4.1487 3.7440 1.3824 23 8 5.3725 4.8462 2.8558 24 6 4.3545 5.8813 2.8790 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.6520 2.8226 -4.1022 33 1 5.7922 -0.2929 2.5301 34 1 7.4079 0.3643 2.0235 35 1 5.2393 1.7567 3.7550 36 1 7.0428 1.9403 3.8666 37 1 4.2392 6.3001 1.8794 38 1 3.4071 5.4518 3.2046 39 1 4.6533 6.6692 3.5704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285162233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:13 Heat of formation + Delta-G solvation = -87.826680 kcal Electronic energy + Delta-G solvation = -22546.802347 eV Core-core repulsion = 19263.145644 eV Total energy + Delta-G solvation = -3283.656703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64550 -38.93471 -37.01691 -35.78111 -34.75277 -32.85375 -31.48302 -28.30974 -26.89244 -25.93360 -25.24446 -24.09956 -21.35439 -21.07038 -19.97555 -18.46630 -17.47094 -16.71429 -16.38655 -15.88433 -15.46092 -15.08496 -14.50984 -13.97391 -13.93359 -13.77205 -13.29894 -12.96050 -12.74313 -12.52387 -12.25378 -12.00878 -11.88437 -11.56449 -11.31731 -11.22380 -10.94751 -10.91048 -10.74073 -10.46727 -10.37692 -10.33735 -9.93964 -9.74370 -9.64157 -9.56097 -8.97963 -8.36044 -7.53933 -6.42806 -3.92708 2.73968 3.07535 3.26227 3.35717 3.57716 3.79365 4.32508 4.48652 4.82406 4.89821 5.00930 5.21926 5.32570 5.36224 5.40491 5.55080 5.72100 5.72949 5.78438 5.84526 5.93991 6.03488 6.19484 6.29994 6.31592 6.36953 6.43943 6.49631 6.55209 6.60175 6.77242 6.81696 6.94827 7.09054 7.52858 8.18595 8.29304 8.37744 9.11964 9.54636 9.90300 10.67560 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.009525 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.745409 B = 2939.079471 C = 3446.178244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.128 3.872 4 N -0.446 5.446 5 C -0.345 4.345 6 H 0.097 0.903 7 C 0.075 3.925 8 N -0.855 5.855 9 Si 0.864 3.136 10 H -0.285 1.285 11 H -0.294 1.294 12 H -0.242 1.242 13 C 0.514 3.486 14 O -0.603 6.603 15 C -0.102 4.102 16 H 0.110 0.890 17 C -0.124 4.124 18 C -0.115 4.115 19 C -0.089 4.089 20 H 0.124 0.876 21 C 0.457 3.543 22 O -0.465 6.465 23 O -0.366 6.366 24 C 0.037 3.963 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.272 0.728 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 2.270 9.322 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.004 3.996 4 N -0.164 5.164 5 C -0.471 4.471 6 H 0.115 0.885 7 C -0.133 4.133 8 N -0.489 5.489 9 Si 0.691 3.309 10 H -0.212 1.212 11 H -0.221 1.221 12 H -0.165 1.165 13 C 0.303 3.697 14 O -0.489 6.489 15 C -0.123 4.123 16 H 0.128 0.872 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.109 4.109 20 H 0.142 0.858 21 C 0.299 3.701 22 O -0.349 6.349 23 O -0.284 6.284 24 C -0.058 4.058 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.096 2.217 9.371 9.855 hybrid contribution -0.498 1.264 -0.322 1.396 sum 1.599 3.481 9.049 9.827 Atomic orbital electron populations 1.21692 0.96647 1.00790 1.01201 1.21842 0.94604 0.98748 1.02245 1.21499 0.82383 0.95288 1.00382 1.43391 1.03789 1.63436 1.05747 1.18852 1.12934 1.24271 0.91076 0.88508 1.25315 0.96137 0.97451 0.94374 1.69912 1.44116 1.35095 0.99811 0.87111 0.79764 0.84185 0.79848 1.21209 1.22140 1.16533 1.19364 0.87760 0.79452 0.83074 1.90484 1.70075 1.55113 1.33262 1.22312 0.95922 0.93651 1.00437 0.87180 1.22711 1.00157 0.97665 0.95610 1.22931 1.03192 0.94167 0.94954 1.22493 0.97762 0.89991 1.00612 0.85814 1.23715 0.87703 0.82009 0.76719 1.90766 1.27538 1.76353 1.40198 1.86476 1.48630 1.31091 1.62187 1.23143 0.91114 0.88994 1.02505 0.93097 0.93259 0.93230 0.91996 0.91633 0.92096 0.92361 0.91840 0.90380 0.89742 0.88479 0.91073 0.92325 0.92167 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.81 6.19 -26.73 -0.17 -2.98 16 3 C 0.13 3.04 3.38 -4.04 -0.01 3.03 16 4 N -0.45 -11.13 1.68 -114.81 -0.19 -11.32 16 5 C -0.34 -9.16 8.68 -14.93 -0.13 -9.29 16 6 H 0.10 2.65 6.94 -52.49 -0.36 2.29 16 7 C 0.08 2.05 5.07 -17.47 -0.09 1.97 16 8 N -0.85 -24.11 13.96 55.50 0.77 -23.34 16 9 Si 0.86 21.90 24.80 -169.99 -4.22 17.68 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.24 -6.20 5.47 56.52 0.31 -5.89 16 13 C 0.51 12.11 4.09 -10.99 -0.04 12.06 16 14 O -0.60 -15.05 14.67 -2.75 -0.04 -15.09 16 15 C -0.10 -1.98 3.74 -90.96 -0.34 -2.32 16 16 H 0.11 2.20 6.20 -51.93 -0.32 1.87 16 17 C -0.12 -1.91 7.46 -25.92 -0.19 -2.10 16 18 C -0.12 -1.74 7.21 -25.77 -0.19 -1.93 16 19 C -0.09 -1.50 4.22 -90.81 -0.38 -1.89 16 20 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 21 C 0.46 8.96 7.23 36.00 0.26 9.22 16 22 O -0.47 -10.88 11.69 -22.64 -0.26 -11.15 16 23 O -0.37 -6.17 10.57 -39.26 -0.41 -6.59 16 24 C 0.04 0.52 10.56 101.05 1.07 1.58 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.32 7.88 -51.92 -0.41 0.91 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.48 4.68 -51.93 -0.24 1.24 16 31 H 0.06 1.43 7.65 -51.93 -0.40 1.03 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.28 8.01 -51.92 -0.42 0.87 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.71 7.09 -51.93 -0.37 1.34 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -31.90 312.97 -5.46 -37.37 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.97 Total: 2.47 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 0.15 Total: 5.25 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.58 Total: -34.66 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.72 Total: -32.82 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.22 Total: 17.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.90 -5.46 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285162233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.460 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds