Wall clock time and date at job start Mon Mar 30 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 N 1.46504 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99865 * 96.33927 * 4 3 2 6 6 H 1.07997 * 120.00365 * 219.68400 * 5 4 3 7 7 C 1.38955 * 120.00066 * 39.68387 * 5 4 3 8 8 N 1.31409 * 119.99824 * 209.65084 * 7 5 4 9 9 Si 1.86799 * 119.99897 * 29.65364 * 7 5 4 10 10 H 1.48494 * 109.47069 * 94.89201 * 9 7 5 11 11 H 1.48506 * 109.46779 * 214.88842 * 9 7 5 12 12 H 1.48495 * 109.47112 * 334.88786 * 9 7 5 13 13 C 1.34777 * 120.00181 * 276.33748 * 4 3 2 14 14 O 1.21292 * 119.99685 * 6.38915 * 13 4 3 15 15 C 1.50696 * 119.99884 * 186.39447 * 13 4 3 16 16 H 1.08996 * 112.85288 * 342.95871 * 15 13 4 17 17 C 1.53782 * 113.61373 * 211.75865 * 15 13 4 18 18 C 1.53780 * 87.08394 * 270.88780 * 17 15 13 19 19 C 1.53787 * 113.61296 * 114.15394 * 15 13 4 20 20 H 1.09004 * 113.61095 * 203.66002 * 19 15 13 21 21 C 1.50693 * 113.61539 * 334.56498 * 19 15 13 22 22 O 1.20827 * 120.00113 * 350.78196 * 21 19 15 23 23 O 1.34231 * 120.00030 * 170.77665 * 21 19 15 24 24 C 1.45196 * 116.99912 * 179.97438 * 23 21 19 25 25 H 1.08999 * 109.47239 * 59.99834 * 1 2 3 26 26 H 1.09004 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47094 * 299.99947 * 1 2 3 28 28 H 1.09008 * 109.47324 * 120.00133 * 2 1 3 29 29 H 1.09000 * 109.47417 * 239.99646 * 2 1 3 30 30 H 1.08999 * 109.47195 * 300.00192 * 3 2 1 31 31 H 1.09003 * 109.47089 * 60.00050 * 3 2 1 32 32 H 0.97007 * 119.99794 * 180.02562 * 8 7 5 33 33 H 1.09009 * 113.61357 * 25.43041 * 17 15 13 34 34 H 1.08995 * 113.61620 * 156.24887 * 17 15 13 35 35 H 1.08998 * 113.62120 * 89.11527 * 18 17 15 36 36 H 1.09002 * 113.61567 * 219.93938 * 18 17 15 37 37 H 1.08995 * 109.47556 * 300.00210 * 24 23 21 38 38 H 1.08998 * 109.47066 * 60.00752 * 24 23 21 39 39 H 1.09005 * 109.47006 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5734 -1.1791 6 1 5.0843 0.9917 -1.3518 7 6 3.7367 2.4545 -2.1528 8 7 3.9688 2.2073 -3.4224 9 14 2.7963 3.9905 -1.6570 10 1 3.7359 5.1362 -1.5593 11 1 1.7589 4.2867 -2.6776 12 1 2.1464 3.7695 -0.3403 13 6 4.1784 1.3138 1.1610 14 8 3.5772 1.0822 2.1886 15 6 5.6784 1.4578 1.1816 16 1 6.1259 1.3682 0.1918 17 6 6.3658 0.5905 2.2493 18 6 6.1855 1.7742 3.2142 19 6 6.1687 2.6834 1.9706 20 1 7.1575 3.0295 1.6694 21 6 5.1559 3.7965 2.0478 22 8 4.1487 3.7440 1.3824 23 8 5.3725 4.8462 2.8558 24 6 4.3545 5.8813 2.8790 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.6520 2.8226 -4.1022 33 1 5.7922 -0.2929 2.5301 34 1 7.4079 0.3643 2.0235 35 1 5.2393 1.7567 3.7550 36 1 7.0428 1.9403 3.8666 37 1 4.2392 6.3001 1.8794 38 1 3.4071 5.4518 3.2046 39 1 4.6533 6.6692 3.5704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285162233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:12 Heat of formation + Delta-G solvation = -107.315207 kcal Electronic energy + Delta-G solvation = -22547.647433 eV Core-core repulsion = 19263.145644 eV Total energy + Delta-G solvation = -3284.501789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16128 -40.54805 -38.61092 -37.28784 -36.62816 -34.68592 -33.42716 -29.59913 -28.46876 -27.19953 -27.09754 -25.79876 -22.87154 -22.57728 -21.61607 -20.28806 -18.95823 -18.43347 -18.01464 -17.40327 -17.16724 -16.85760 -16.08808 -15.68943 -15.61179 -15.32562 -14.97721 -14.46798 -14.33590 -14.24458 -13.76822 -13.66768 -13.30180 -13.13343 -13.02679 -12.73024 -12.65996 -12.51393 -12.35644 -12.15840 -11.81291 -11.78822 -11.68974 -11.49680 -11.22356 -11.13677 -11.00597 -10.22484 -9.53647 -8.54909 -6.03227 1.15584 1.24483 1.31715 1.53452 1.75434 2.02431 2.25543 2.73974 2.94054 3.48575 3.65661 3.86801 3.94251 4.04794 4.19507 4.23040 4.25590 4.27668 4.42586 4.51113 4.60186 4.63519 4.68925 4.73580 4.83756 4.97778 4.98032 5.07544 5.09055 5.11904 5.24625 5.34342 5.40681 5.49901 5.55578 6.08442 6.37025 6.83183 7.04765 7.58905 7.96146 8.59403 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.009525 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.745409 B = 2939.079471 C = 3446.178244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.126 3.874 4 N -0.462 5.462 5 C -0.332 4.332 6 H 0.084 0.916 7 C 0.045 3.955 8 N -0.886 5.886 9 Si 0.910 3.090 10 H -0.294 1.294 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.513 3.487 14 O -0.621 6.621 15 C -0.124 4.124 16 H 0.100 0.900 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.087 4.087 20 H 0.164 0.836 21 C 0.451 3.549 22 O -0.513 6.513 23 O -0.359 6.359 24 C 0.031 3.969 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.276 0.724 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 2.480 10.796 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.003 3.997 4 N -0.181 5.181 5 C -0.459 4.459 6 H 0.102 0.898 7 C -0.160 4.160 8 N -0.523 5.523 9 Si 0.737 3.263 10 H -0.221 1.221 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.304 3.696 14 O -0.508 6.508 15 C -0.145 4.145 16 H 0.118 0.882 17 C -0.145 4.145 18 C -0.139 4.139 19 C -0.106 4.106 20 H 0.182 0.818 21 C 0.294 3.706 22 O -0.401 6.401 23 O -0.276 6.276 24 C -0.062 4.062 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.275 2.435 10.870 11.611 hybrid contribution -0.849 1.220 -0.672 1.631 sum 2.426 3.655 10.197 11.101 Atomic orbital electron populations 1.21657 0.93498 1.02748 1.01775 1.21746 0.97368 0.96348 1.01116 1.21496 0.82232 0.96922 0.99051 1.43545 1.04223 1.64495 1.05862 1.18753 1.12396 1.23307 0.91457 0.89836 1.25650 0.97164 0.98774 0.94403 1.69937 1.45956 1.36048 1.00339 0.86421 0.78853 0.82030 0.79033 1.22103 1.21481 1.17609 1.20059 0.89695 0.77632 0.82214 1.90458 1.71179 1.55512 1.33669 1.22426 0.93064 0.97402 1.01636 0.88174 1.22777 1.01704 0.96619 0.93387 1.22837 1.03519 0.92946 0.94628 1.22759 0.98505 0.88434 1.00923 0.81822 1.24348 0.87458 0.82798 0.75983 1.90747 1.29593 1.77460 1.42276 1.86469 1.49121 1.30881 1.61092 1.23428 0.90513 0.89126 1.03176 0.92565 0.90616 0.92632 0.93019 0.92665 0.93054 0.93860 0.91449 0.91771 0.85517 0.91484 0.86586 0.93334 0.93248 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.83 16 2 C -0.13 -5.30 6.19 30.59 0.19 -5.11 16 3 C 0.13 6.13 3.38 86.38 0.29 6.42 16 4 N -0.46 -23.53 1.68 -635.54 -1.07 -24.60 16 5 C -0.33 -17.97 8.68 84.04 0.73 -17.24 16 6 H 0.08 4.68 6.94 -2.91 -0.02 4.66 16 7 C 0.05 2.50 5.07 84.93 0.43 2.93 16 8 N -0.89 -50.60 13.96 21.66 0.30 -50.29 16 9 Si 0.91 46.25 24.80 68.60 1.70 47.95 16 10 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.25 -13.15 5.47 99.48 0.54 -12.60 16 13 C 0.51 24.38 4.09 87.66 0.36 24.74 16 14 O -0.62 -31.40 14.67 4.87 0.07 -31.32 16 15 C -0.12 -4.69 3.74 -11.01 -0.04 -4.73 16 16 H 0.10 3.95 6.20 -2.39 -0.01 3.93 16 17 C -0.11 -3.01 7.46 31.12 0.23 -2.78 16 18 C -0.10 -2.77 7.21 31.21 0.23 -2.54 16 19 C -0.09 -2.73 4.22 -10.92 -0.05 -2.78 16 20 H 0.16 3.82 8.14 -2.39 -0.02 3.80 16 21 C 0.45 17.20 7.23 71.23 0.52 17.71 16 22 O -0.51 -24.24 11.69 25.68 0.30 -23.94 16 23 O -0.36 -11.43 10.57 -51.42 -0.54 -11.97 16 24 C 0.03 0.83 10.56 113.37 1.20 2.03 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 2.23 7.88 -2.38 -0.02 2.21 16 29 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 2.54 4.68 -2.39 -0.01 2.53 16 31 H 0.04 2.19 7.65 -2.39 -0.02 2.17 16 32 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 33 H 0.06 1.99 8.01 -2.38 -0.02 1.97 16 34 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.25 7.09 -2.39 -0.02 2.24 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 38 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 39 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -71.03 312.97 6.43 -64.60 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.87 Total: 14.76 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 4.79 Total: 14.81 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -0.77 Total: -74.89 kcal Atomic # 8 Polarization: -67.06 SS G_CDS: -0.17 Total: -67.23 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.70 Total: 47.95 kcal Total: -71.03 6.43 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285162233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.712 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds