Wall clock time and date at job start Mon Mar 30 2020 01:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00171 * 2 1 4 4 O 1.20825 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00248 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.90763 * 48.74964 * 5 3 2 7 7 C 1.53779 * 113.61651 * 277.49718 * 5 3 2 8 8 C 1.53775 * 87.08192 * 220.01668 * 7 5 3 9 9 C 1.53775 * 87.08166 * 25.43312 * 8 7 5 10 10 H 1.09003 * 113.61474 * 89.19739 * 9 8 7 11 11 C 1.50701 * 113.61453 * 220.01433 * 9 8 7 12 12 O 1.21286 * 119.99805 * 100.49133 * 11 9 8 13 13 N 1.34772 * 120.00420 * 280.49405 * 11 9 8 14 14 C 1.46497 * 119.99855 * 0.02562 * 13 11 9 15 15 C 1.46506 * 119.99997 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46912 * 0.02562 * 15 13 11 17 17 C 1.52999 * 109.46817 * 240.00109 * 15 13 11 18 18 C 1.50697 * 109.46529 * 120.00413 * 15 13 11 19 19 H 1.08002 * 120.00599 * 0.02562 * 18 15 13 20 20 C 1.37880 * 119.99675 * 179.97438 * 18 15 13 21 21 N 1.31517 * 120.00210 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00019 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.46845 * 269.99914 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99403 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00010 * 22 20 18 26 26 H 1.08995 * 109.46754 * 300.00027 * 1 2 3 27 27 H 1.08996 * 109.46819 * 59.99747 * 1 2 3 28 28 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09006 * 113.61223 * 105.46674 * 7 5 3 30 30 H 1.09000 * 113.61353 * 334.57315 * 7 5 3 31 31 H 1.08995 * 113.61816 * 270.88205 * 8 7 5 32 32 H 1.09000 * 113.68900 * 139.99193 * 8 7 5 33 33 H 1.08999 * 109.47211 * 269.99803 * 14 13 11 34 34 H 1.09001 * 109.47231 * 29.99762 * 14 13 11 35 35 H 1.09004 * 109.47075 * 149.99714 * 14 13 11 36 36 H 1.08998 * 109.46841 * 180.02562 * 17 15 13 37 37 H 1.09000 * 109.47280 * 299.99966 * 17 15 13 38 38 H 1.08998 * 109.47206 * 60.00371 * 17 15 13 39 39 H 0.96998 * 119.99640 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0250 0.6358 -0.7540 7 6 4.1906 1.1238 1.3978 8 6 5.1807 2.2270 0.9886 9 6 4.1078 2.7142 0.0005 10 1 3.4181 3.4416 0.4286 11 6 4.6656 3.1493 -1.3301 12 8 4.6073 2.4039 -2.2851 13 7 5.2293 4.3667 -1.4590 14 6 5.3004 5.2668 -0.3053 15 6 5.7721 4.7894 -2.7525 16 1 5.6297 3.9938 -3.4837 17 6 7.2657 5.0871 -2.6061 18 6 5.0554 6.0314 -3.2161 19 1 4.2742 6.4630 -2.6079 20 6 5.3978 6.6174 -4.4162 21 7 4.7721 7.7010 -4.8212 22 14 6.7495 5.8715 -5.4678 23 1 8.0565 6.4661 -5.0889 24 1 6.7923 4.4030 -5.2506 25 1 6.4745 6.1523 -6.8999 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 4.6609 0.1545 1.5634 30 1 3.5226 1.4152 2.2083 31 1 6.0807 1.8483 0.5041 32 1 5.3965 2.9392 1.7850 33 1 4.4042 5.8864 -0.2722 34 1 5.3699 4.6793 0.6102 35 1 6.1799 5.9044 -0.3956 36 1 7.6693 5.4020 -3.5683 37 1 7.4076 5.8829 -1.8749 38 1 7.7840 4.1888 -2.2707 39 1 5.0128 8.1130 -5.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285775613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:08 Heat of formation + Delta-G solvation = -90.986120 kcal Electronic energy + Delta-G solvation = -21422.878235 eV Core-core repulsion = 18139.084528 eV Total energy + Delta-G solvation = -3283.793707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01305 -39.53393 -37.52938 -36.23420 -35.42527 -32.72690 -30.53298 -28.67111 -26.71335 -26.34701 -26.14123 -25.06073 -21.90255 -21.44399 -19.54486 -18.51910 -17.83956 -17.04727 -16.80375 -16.35679 -15.99273 -15.74185 -14.85426 -14.52231 -14.20756 -13.50780 -13.43145 -13.05858 -12.99496 -12.63487 -12.39830 -12.21814 -12.17010 -12.01539 -11.85291 -11.56312 -11.49317 -11.17589 -10.98879 -10.84684 -10.67355 -10.64991 -10.24977 -10.12303 -9.64387 -9.32497 -8.97886 -8.61872 -7.71342 -6.12423 -4.12930 2.21164 2.68462 3.19559 3.24008 3.37744 3.40245 3.80404 4.24027 4.36564 4.38288 4.57968 4.70060 5.01237 5.02107 5.09503 5.17219 5.26273 5.42234 5.49119 5.56190 5.60715 5.67095 5.77505 5.82041 6.01020 6.20086 6.24882 6.27960 6.33901 6.35747 6.49856 6.84456 7.12461 7.35988 7.64557 7.76627 8.19656 8.49478 8.85983 8.92400 9.48376 11.00476 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.005078 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.967433 B = 5513.064957 C = 5918.044708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.502 6.502 5 C -0.089 4.089 6 H 0.138 0.862 7 C -0.119 4.119 8 C -0.122 4.122 9 C -0.115 4.115 10 H 0.125 0.875 11 C 0.517 3.483 12 O -0.554 6.554 13 N -0.583 5.583 14 C 0.085 3.915 15 C 0.228 3.772 16 H 0.062 0.938 17 C -0.161 4.161 18 C -0.527 4.527 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.895 5.895 22 Si 0.884 3.116 23 H -0.277 1.277 24 H -0.264 1.264 25 H -0.294 1.294 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -13.388 14.727 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.388 6.388 5 C -0.109 4.109 6 H 0.155 0.845 7 C -0.156 4.156 8 C -0.160 4.160 9 C -0.136 4.136 10 H 0.143 0.857 11 C 0.304 3.696 12 O -0.434 6.434 13 N -0.313 5.313 14 C -0.059 4.059 15 C 0.126 3.874 16 H 0.080 0.920 17 C -0.218 4.218 18 C -0.565 4.565 19 H 0.097 0.903 20 C -0.128 4.128 21 N -0.533 5.533 22 Si 0.714 3.286 23 H -0.204 1.204 24 H -0.188 1.188 25 H -0.222 1.222 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.115 -13.303 14.066 19.393 hybrid contribution 0.330 0.065 -0.746 0.818 sum -0.786 -13.238 13.320 18.796 Atomic orbital electron populations 1.23252 0.76674 1.03459 1.02606 1.86511 1.23195 1.33651 1.84205 1.23619 0.91738 0.81242 0.71831 1.90678 1.66929 1.36370 1.44864 1.22469 0.87280 0.99644 1.01458 0.84470 1.22833 0.98045 1.00495 0.94263 1.22827 0.96908 0.98074 0.98175 1.22775 0.99075 0.96047 0.95750 0.85745 1.20085 0.78343 0.81959 0.89232 1.90633 1.58596 1.53604 1.40530 1.47801 1.57298 1.14016 1.12141 1.21645 1.02855 0.94167 0.87189 1.19302 0.89618 0.97262 0.81208 0.92010 1.22453 0.98647 0.99740 1.01010 1.21171 1.20526 1.08874 1.05921 0.90348 1.24874 0.96325 0.94515 0.97073 1.69881 1.41592 1.19848 1.21972 0.86911 0.81941 0.80572 0.79211 1.20395 1.18843 1.22153 0.92030 0.91810 0.88245 0.89569 0.89366 0.88935 0.89660 0.92773 0.92459 0.90781 0.93159 0.92500 0.94802 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.67 10.57 -39.25 -0.41 -5.08 16 3 C 0.47 7.09 7.48 36.01 0.27 7.36 16 4 O -0.50 -8.98 15.65 -18.75 -0.29 -9.27 16 5 C -0.09 -1.20 3.56 -90.96 -0.32 -1.53 16 6 H 0.14 1.93 7.47 -51.93 -0.39 1.54 16 7 C -0.12 -1.11 7.63 -25.92 -0.20 -1.31 16 8 C -0.12 -1.27 6.78 -25.92 -0.18 -1.45 16 9 C -0.12 -1.71 2.14 -90.96 -0.20 -1.90 16 10 H 0.12 1.86 7.27 -51.93 -0.38 1.48 16 11 C 0.52 10.42 7.20 -10.99 -0.08 10.34 16 12 O -0.55 -13.19 15.25 5.55 0.08 -13.10 16 13 N -0.58 -12.12 2.75 -175.26 -0.48 -12.60 16 14 C 0.09 1.40 9.40 59.85 0.56 1.96 16 15 C 0.23 5.58 2.23 -69.08 -0.15 5.43 16 16 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 17 C -0.16 -3.45 8.65 37.16 0.32 -3.12 16 18 C -0.53 -14.88 8.95 -34.44 -0.31 -15.19 16 19 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 20 C 0.07 2.17 5.45 -17.82 -0.10 2.07 16 21 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 22 Si 0.88 22.10 24.37 -169.99 -4.14 17.96 16 23 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 24 H -0.26 -6.51 6.53 56.52 0.37 -6.15 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.08 0.71 7.54 -51.93 -0.39 0.32 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.71 5.55 -51.93 -0.29 0.42 16 35 H 0.07 1.19 6.42 -51.93 -0.33 0.86 16 36 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 37 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -35.13 314.44 -4.62 -39.76 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.57 Total: 0.17 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 0.69 Total: 4.07 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.29 Total: -39.23 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.62 Total: -27.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.13 -4.62 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285775613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.230 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds