Wall clock time and date at job start Mon Mar 30 2020 01:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00171 * 2 1 4 4 O 1.20825 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00248 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.90763 * 48.74964 * 5 3 2 7 7 C 1.53779 * 113.61651 * 277.49718 * 5 3 2 8 8 C 1.53775 * 87.08192 * 220.01668 * 7 5 3 9 9 C 1.53775 * 87.08166 * 25.43312 * 8 7 5 10 10 H 1.09003 * 113.61474 * 89.19739 * 9 8 7 11 11 C 1.50701 * 113.61453 * 220.01433 * 9 8 7 12 12 O 1.21286 * 119.99805 * 100.49133 * 11 9 8 13 13 N 1.34772 * 120.00420 * 280.49405 * 11 9 8 14 14 C 1.46497 * 119.99855 * 0.02562 * 13 11 9 15 15 C 1.46506 * 119.99997 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46912 * 0.02562 * 15 13 11 17 17 C 1.52999 * 109.46817 * 240.00109 * 15 13 11 18 18 C 1.50697 * 109.46529 * 120.00413 * 15 13 11 19 19 H 1.08002 * 120.00599 * 0.02562 * 18 15 13 20 20 C 1.37880 * 119.99675 * 179.97438 * 18 15 13 21 21 N 1.31517 * 120.00210 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00019 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.46845 * 269.99914 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99403 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00010 * 22 20 18 26 26 H 1.08995 * 109.46754 * 300.00027 * 1 2 3 27 27 H 1.08996 * 109.46819 * 59.99747 * 1 2 3 28 28 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09006 * 113.61223 * 105.46674 * 7 5 3 30 30 H 1.09000 * 113.61353 * 334.57315 * 7 5 3 31 31 H 1.08995 * 113.61816 * 270.88205 * 8 7 5 32 32 H 1.09000 * 113.68900 * 139.99193 * 8 7 5 33 33 H 1.08999 * 109.47211 * 269.99803 * 14 13 11 34 34 H 1.09001 * 109.47231 * 29.99762 * 14 13 11 35 35 H 1.09004 * 109.47075 * 149.99714 * 14 13 11 36 36 H 1.08998 * 109.46841 * 180.02562 * 17 15 13 37 37 H 1.09000 * 109.47280 * 299.99966 * 17 15 13 38 38 H 1.08998 * 109.47206 * 60.00371 * 17 15 13 39 39 H 0.96998 * 119.99640 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0250 0.6358 -0.7540 7 6 4.1906 1.1238 1.3978 8 6 5.1807 2.2270 0.9886 9 6 4.1078 2.7142 0.0005 10 1 3.4181 3.4416 0.4286 11 6 4.6656 3.1493 -1.3301 12 8 4.6073 2.4039 -2.2851 13 7 5.2293 4.3667 -1.4590 14 6 5.3004 5.2668 -0.3053 15 6 5.7721 4.7894 -2.7525 16 1 5.6297 3.9938 -3.4837 17 6 7.2657 5.0871 -2.6061 18 6 5.0554 6.0314 -3.2161 19 1 4.2742 6.4630 -2.6079 20 6 5.3978 6.6174 -4.4162 21 7 4.7721 7.7010 -4.8212 22 14 6.7495 5.8715 -5.4678 23 1 8.0565 6.4661 -5.0889 24 1 6.7923 4.4030 -5.2506 25 1 6.4745 6.1523 -6.8999 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 4.6609 0.1545 1.5634 30 1 3.5226 1.4152 2.2083 31 1 6.0807 1.8483 0.5041 32 1 5.3965 2.9392 1.7850 33 1 4.4042 5.8864 -0.2722 34 1 5.3699 4.6793 0.6102 35 1 6.1799 5.9044 -0.3956 36 1 7.6693 5.4020 -3.5683 37 1 7.4076 5.8829 -1.8749 38 1 7.7840 4.1888 -2.2707 39 1 5.0128 8.1130 -5.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285775613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:08 Heat of formation + Delta-G solvation = -115.777060 kcal Electronic energy + Delta-G solvation = -21423.953251 eV Core-core repulsion = 18139.084528 eV Total energy + Delta-G solvation = -3284.868723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.17066 -40.88436 -38.77268 -37.40670 -37.13319 -34.77176 -32.40518 -29.62672 -27.93233 -27.58192 -27.22563 -27.10521 -23.30083 -22.66902 -20.80229 -19.88421 -19.16807 -18.77148 -18.15350 -17.56866 -17.49935 -17.25116 -16.58974 -15.97798 -15.23288 -15.12403 -14.85108 -14.45711 -14.13349 -14.01985 -13.97466 -13.78511 -13.63002 -13.16693 -13.06316 -13.03570 -12.77158 -12.57951 -12.54547 -12.15558 -12.04140 -11.85615 -11.59283 -11.52219 -11.36691 -11.33182 -10.81958 -10.56468 -9.41936 -8.37321 -6.42567 1.07265 1.24149 1.34043 1.43093 1.64631 1.72316 2.25885 2.30715 2.97806 3.18500 3.44438 3.63534 3.68365 3.88363 4.17863 4.28136 4.28490 4.39612 4.45205 4.56552 4.60370 4.61076 4.65399 4.67856 4.74242 4.82893 4.96417 4.96884 5.04246 5.08371 5.29398 5.31098 5.36762 5.48514 5.70806 6.17863 6.59418 6.65118 6.72336 7.18080 7.33958 8.79225 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.005078 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.967433 B = 5513.064957 C = 5918.044708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.541 6.541 5 C -0.100 4.100 6 H 0.128 0.872 7 C -0.095 4.095 8 C -0.107 4.107 9 C -0.121 4.121 10 H 0.123 0.877 11 C 0.507 3.493 12 O -0.601 6.601 13 N -0.592 5.592 14 C 0.082 3.918 15 C 0.229 3.771 16 H 0.029 0.971 17 C -0.152 4.152 18 C -0.530 4.530 19 H 0.038 0.962 20 C 0.020 3.980 21 N -0.941 5.941 22 Si 0.946 3.054 23 H -0.249 1.249 24 H -0.262 1.262 25 H -0.296 1.296 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -15.154 17.038 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.431 6.431 5 C -0.120 4.120 6 H 0.146 0.854 7 C -0.132 4.132 8 C -0.145 4.145 9 C -0.142 4.142 10 H 0.141 0.859 11 C 0.296 3.704 12 O -0.483 6.483 13 N -0.321 5.321 14 C -0.060 4.060 15 C 0.125 3.875 16 H 0.047 0.953 17 C -0.209 4.209 18 C -0.568 4.568 19 H 0.057 0.943 20 C -0.178 4.178 21 N -0.581 5.581 22 Si 0.773 3.227 23 H -0.174 1.174 24 H -0.187 1.187 25 H -0.224 1.224 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.725 -15.081 16.429 22.313 hybrid contribution -0.418 0.590 -1.455 1.625 sum 0.307 -14.491 14.974 20.840 Atomic orbital electron populations 1.23566 0.75014 1.05837 1.02310 1.86504 1.24870 1.32561 1.83577 1.24010 0.92450 0.81184 0.70729 1.90659 1.67861 1.37615 1.46936 1.22654 0.86370 0.98595 1.04337 0.85397 1.22843 0.97085 1.01683 0.91628 1.22891 0.95798 0.98639 0.97146 1.22898 1.01061 0.96685 0.93548 0.85934 1.21102 0.77261 0.81164 0.90840 1.90596 1.60207 1.54879 1.42656 1.47900 1.57320 1.15015 1.11889 1.21871 1.02320 0.94267 0.87505 1.18987 0.91682 0.94051 0.82760 0.95312 1.22287 0.95888 1.01604 1.01148 1.21392 1.19776 1.09986 1.05651 0.94338 1.25716 0.98876 0.94827 0.98421 1.70020 1.43672 1.21610 1.22800 0.85907 0.80059 0.79775 0.77000 1.17370 1.18689 1.22358 0.91358 0.93158 0.84544 0.86767 0.87841 0.88689 0.86543 0.94375 0.87672 0.90249 0.94025 0.90893 0.92023 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.95 10.57 -51.40 -0.54 -9.49 16 3 C 0.47 13.91 7.48 71.24 0.53 14.45 16 4 O -0.54 -19.60 15.65 21.97 0.34 -19.25 16 5 C -0.10 -2.56 3.56 -11.02 -0.04 -2.60 16 6 H 0.13 3.54 7.47 -2.39 -0.02 3.52 16 7 C -0.10 -1.40 7.63 31.12 0.24 -1.16 16 8 C -0.11 -1.80 6.78 31.12 0.21 -1.59 16 9 C -0.12 -3.40 2.14 -11.02 -0.02 -3.42 16 10 H 0.12 3.53 7.27 -2.39 -0.02 3.51 16 11 C 0.51 20.46 7.20 87.66 0.63 21.09 16 12 O -0.60 -29.38 15.25 -3.05 -0.05 -29.42 16 13 N -0.59 -24.53 2.75 -826.80 -2.28 -26.81 16 14 C 0.08 2.61 9.40 127.77 1.20 3.81 16 15 C 0.23 11.28 2.23 44.24 0.10 11.38 16 16 H 0.03 1.61 5.96 -2.39 -0.01 1.60 16 17 C -0.15 -6.20 8.65 71.98 0.62 -5.58 16 18 C -0.53 -30.92 8.95 25.60 0.23 -30.69 16 19 H 0.04 2.48 7.89 -2.91 -0.02 2.46 16 20 C 0.02 1.19 5.45 84.65 0.46 1.65 16 21 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 22 Si 0.95 45.91 24.37 68.60 1.67 47.58 16 23 H -0.25 -10.89 6.87 99.48 0.68 -10.20 16 24 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.05 1.07 8.13 -2.39 -0.02 1.06 16 28 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 32 H 0.12 1.28 7.54 -2.39 -0.02 1.26 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 2.26 5.55 -2.39 -0.01 2.25 16 35 H 0.08 2.41 6.42 -2.38 -0.02 2.39 16 36 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 37 H 0.07 2.72 6.66 -2.39 -0.02 2.70 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -81.39 314.44 5.78 -75.61 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.97 Total: 11.85 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.36 Total: 9.02 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.98 Total: -85.89 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.25 Total: -58.17 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -81.39 5.78 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285775613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.168 kcal (2) G-P(sol) polarization free energy of solvation -81.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds