Wall clock time and date at job start Mon Mar 30 2020 01:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00342 * 2 1 4 4 O 1.20821 * 119.99996 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99830 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46881 * 180.02562 * 5 3 2 7 7 H 1.09008 * 109.47421 * 55.00270 * 6 5 3 8 8 C 1.52999 * 109.47441 * 294.99956 * 6 5 3 9 9 C 1.52999 * 109.47069 * 174.99910 * 6 5 3 10 10 C 1.50704 * 109.47264 * 185.00048 * 9 6 5 11 11 O 1.21299 * 119.99692 * 359.97438 * 10 9 6 12 12 N 1.34770 * 120.00260 * 180.02562 * 10 9 6 13 13 C 1.37097 * 120.00223 * 180.27444 * 12 10 9 14 14 H 1.08000 * 120.00174 * 224.12217 * 13 12 10 15 15 C 1.38952 * 120.00167 * 44.11354 * 13 12 10 16 16 N 1.31414 * 119.99368 * 18.28561 * 15 13 12 17 17 Si 1.86796 * 120.00471 * 198.28207 * 15 13 12 18 18 H 1.48501 * 109.46888 * 60.00044 * 17 15 13 19 19 H 1.48495 * 109.47453 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46972 * 300.00537 * 17 15 13 21 21 C 1.46505 * 120.00149 * 0.02562 * 12 10 9 22 22 C 1.52995 * 117.50038 * 183.22415 * 21 12 10 23 23 C 1.52995 * 60.00068 * 252.50787 * 22 21 12 24 24 H 1.08991 * 109.47563 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47235 * 300.00387 * 1 2 3 26 26 H 1.09007 * 109.46715 * 59.99522 * 1 2 3 27 27 H 1.08993 * 109.47169 * 60.00462 * 5 3 2 28 28 H 1.09004 * 109.47050 * 300.00062 * 5 3 2 29 29 H 1.09001 * 109.46954 * 59.99926 * 8 6 5 30 30 H 1.09000 * 109.47857 * 179.97438 * 8 6 5 31 31 H 1.08999 * 109.46848 * 300.00593 * 8 6 5 32 32 H 1.08999 * 109.46943 * 65.00114 * 9 6 5 33 33 H 1.08999 * 109.47378 * 304.99659 * 9 6 5 34 34 H 0.97003 * 119.99681 * 174.92152 * 16 15 13 35 35 H 1.09008 * 115.54413 * 328.92945 * 21 12 10 36 36 H 1.08997 * 117.49917 * 359.97438 * 22 21 12 37 37 H 1.08996 * 117.50072 * 145.02102 * 22 21 12 38 38 H 1.08999 * 117.50328 * 252.51493 * 23 22 21 39 39 H 1.08999 * 117.52079 * 107.47704 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 1 3.5378 3.2573 0.8429 8 6 3.5608 3.4042 -1.3062 9 6 5.5229 2.8234 0.1274 10 6 5.9401 4.2662 0.2515 11 8 5.1021 5.1430 0.2395 12 7 7.2445 4.5823 0.3747 13 6 7.6236 5.8944 0.4932 14 1 8.4666 6.2659 -0.0705 15 6 6.9232 6.7464 1.3383 16 7 6.1506 6.2501 2.2784 17 14 7.0799 8.5970 1.1383 18 1 6.6271 8.9880 -0.2208 19 1 6.2392 9.2778 2.1556 20 1 8.4984 8.9964 1.3215 21 6 8.2568 3.5233 0.3875 22 6 9.7126 3.9403 0.6058 23 6 9.2480 3.4794 -0.7772 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7807 0.8909 29 1 2.4761 3.3461 -1.3962 30 1 3.8695 4.4496 -1.3057 31 1 4.0233 2.8888 -2.1480 32 1 5.9848 2.3864 -0.7579 33 1 5.8439 2.2750 1.0130 34 1 5.7198 6.8421 2.9148 35 1 7.9363 2.5718 0.8119 36 1 9.9172 5.0025 0.7395 37 1 10.3503 3.2631 1.1739 38 1 9.5799 2.4990 -1.1188 39 1 9.1466 4.2381 -1.5532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288260207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:50 Heat of formation + Delta-G solvation = -90.779956 kcal Electronic energy + Delta-G solvation = -21244.295997 eV Core-core repulsion = 17960.511230 eV Total energy + Delta-G solvation = -3283.784767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44157 -38.68090 -36.85900 -36.14038 -34.59548 -32.65193 -30.90159 -29.21351 -27.47700 -26.73699 -24.59749 -21.89034 -21.60999 -21.05195 -19.92604 -18.78057 -17.44721 -16.77666 -16.45212 -16.05562 -15.87062 -14.85665 -14.64816 -14.09056 -13.89229 -13.72536 -13.58058 -13.11057 -12.62870 -12.27213 -12.14389 -11.99465 -11.71034 -11.41792 -11.03437 -10.94593 -10.87657 -10.80666 -10.72246 -10.60966 -10.30852 -10.20044 -10.07135 -10.00553 -9.89076 -9.69245 -8.63725 -7.88368 -6.94378 -6.05772 -3.80873 2.33802 2.77555 3.33520 3.41104 3.44384 4.19412 4.32063 4.80668 4.83630 4.85791 5.02527 5.08625 5.18118 5.22377 5.38450 5.40361 5.57173 5.61849 5.74328 5.79771 5.83255 5.93581 6.09362 6.18838 6.24149 6.26118 6.34968 6.48907 6.51257 6.71200 6.82004 6.93368 6.96308 7.15014 7.66797 7.88031 8.33482 9.13519 9.23934 9.73934 10.38444 11.03453 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.005124 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.214414 B = 5462.723511 C = 6372.170332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.458 3.542 4 O -0.495 6.495 5 C -0.109 4.109 6 C -0.060 4.060 7 H 0.087 0.913 8 C -0.155 4.155 9 C -0.129 4.129 10 C 0.486 3.514 11 O -0.526 6.526 12 N -0.431 5.431 13 C -0.350 4.350 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.834 5.834 17 Si 0.912 3.088 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.077 3.923 22 C -0.175 4.175 23 C -0.209 4.209 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -13.376 -3.900 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.301 3.699 4 O -0.382 6.382 5 C -0.147 4.147 6 C -0.079 4.079 7 H 0.105 0.895 8 C -0.211 4.211 9 C -0.170 4.170 10 C 0.273 3.727 11 O -0.404 6.404 12 N -0.153 5.153 13 C -0.477 4.477 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.468 5.468 17 Si 0.739 3.261 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.029 4.029 22 C -0.213 4.213 23 C -0.248 4.248 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.780 -12.547 -3.776 13.637 hybrid contribution -0.001 0.762 0.111 0.770 sum -3.781 -11.785 -3.665 12.908 Atomic orbital electron populations 1.23200 0.76926 1.03247 1.02506 1.86515 1.23074 1.34214 1.84604 1.24023 0.92525 0.81041 0.72333 1.90676 1.67172 1.36065 1.44256 1.21616 0.86719 1.01057 1.05314 1.20666 0.94897 0.91037 1.01263 0.89480 1.22033 1.01050 1.03394 0.94669 1.21653 0.95296 0.97972 1.02041 1.19699 0.83055 0.89048 0.80865 1.90505 1.49537 1.49913 1.50410 1.42797 1.02827 1.04121 1.65519 1.18772 1.18231 0.83866 1.26791 0.90766 1.25212 0.95334 0.99349 0.93651 1.69809 1.28058 1.35824 1.13069 0.86294 0.77475 0.84070 0.78260 1.19992 1.21252 1.20485 1.21686 0.87068 0.93652 1.00539 1.23049 0.97093 1.02800 0.98328 1.23305 1.06924 1.01672 0.92870 0.88448 0.92011 0.92071 0.87935 0.87884 0.92422 0.89717 0.94426 0.90681 0.90787 0.92612 0.88076 0.87568 0.89902 0.89890 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.37 -4.60 10.56 -39.26 -0.41 -5.01 16 3 C 0.46 6.72 7.67 36.01 0.28 7.00 16 4 O -0.50 -8.93 13.72 -18.75 -0.26 -9.18 16 5 C -0.11 -1.44 5.29 -27.88 -0.15 -1.59 16 6 C -0.06 -1.06 1.68 -90.62 -0.15 -1.21 16 7 H 0.09 1.85 7.77 -51.92 -0.40 1.45 16 8 C -0.15 -2.86 8.67 37.16 0.32 -2.54 16 9 C -0.13 -2.37 3.79 -27.88 -0.11 -2.48 16 10 C 0.49 12.04 6.68 -10.99 -0.07 11.97 16 11 O -0.53 -15.17 11.73 5.54 0.06 -15.10 16 12 N -0.43 -10.68 2.83 -107.73 -0.31 -10.99 16 13 C -0.35 -9.56 7.93 -14.93 -0.12 -9.68 16 14 H 0.07 1.97 7.25 -52.49 -0.38 1.59 16 15 C 0.08 2.12 4.38 -17.47 -0.08 2.05 16 16 N -0.83 -24.88 11.74 55.50 0.65 -24.23 16 17 Si 0.91 22.23 29.59 -169.99 -5.03 17.20 16 18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.08 1.51 5.87 -67.93 -0.40 1.11 16 22 C -0.18 -3.13 9.80 -26.74 -0.26 -3.40 16 23 C -0.21 -3.51 10.36 -26.74 -0.28 -3.78 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.06 0.59 8.13 -51.92 -0.42 0.16 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.07 5.96 -51.93 -0.31 0.76 16 30 H 0.08 1.88 5.95 -51.93 -0.31 1.57 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.07 1.24 7.57 -51.93 -0.39 0.85 16 34 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 35 H 0.10 1.75 6.96 -51.92 -0.36 1.39 16 36 H 0.11 2.13 6.72 -51.93 -0.35 1.78 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -34.07 322.05 -6.25 -40.32 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.87 Total: 3.28 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.05 Total: -1.14 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.35 Total: -35.21 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.61 Total: -29.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.07 -6.25 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288260207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.458 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds