Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00342 * 2 1 4 4 O 1.20821 * 119.99996 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99830 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46881 * 180.02562 * 5 3 2 7 7 H 1.09008 * 109.47421 * 55.00270 * 6 5 3 8 8 C 1.52999 * 109.47441 * 294.99956 * 6 5 3 9 9 C 1.52999 * 109.47069 * 174.99910 * 6 5 3 10 10 C 1.50704 * 109.47264 * 185.00048 * 9 6 5 11 11 O 1.21299 * 119.99692 * 359.97438 * 10 9 6 12 12 N 1.34770 * 120.00260 * 180.02562 * 10 9 6 13 13 C 1.37097 * 120.00223 * 180.27444 * 12 10 9 14 14 H 1.08000 * 120.00174 * 224.12217 * 13 12 10 15 15 C 1.38952 * 120.00167 * 44.11354 * 13 12 10 16 16 N 1.31414 * 119.99368 * 18.28561 * 15 13 12 17 17 Si 1.86796 * 120.00471 * 198.28207 * 15 13 12 18 18 H 1.48501 * 109.46888 * 60.00044 * 17 15 13 19 19 H 1.48495 * 109.47453 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46972 * 300.00537 * 17 15 13 21 21 C 1.46505 * 120.00149 * 0.02562 * 12 10 9 22 22 C 1.52995 * 117.50038 * 183.22415 * 21 12 10 23 23 C 1.52995 * 60.00068 * 252.50787 * 22 21 12 24 24 H 1.08991 * 109.47563 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47235 * 300.00387 * 1 2 3 26 26 H 1.09007 * 109.46715 * 59.99522 * 1 2 3 27 27 H 1.08993 * 109.47169 * 60.00462 * 5 3 2 28 28 H 1.09004 * 109.47050 * 300.00062 * 5 3 2 29 29 H 1.09001 * 109.46954 * 59.99926 * 8 6 5 30 30 H 1.09000 * 109.47857 * 179.97438 * 8 6 5 31 31 H 1.08999 * 109.46848 * 300.00593 * 8 6 5 32 32 H 1.08999 * 109.46943 * 65.00114 * 9 6 5 33 33 H 1.08999 * 109.47378 * 304.99659 * 9 6 5 34 34 H 0.97003 * 119.99681 * 174.92152 * 16 15 13 35 35 H 1.09008 * 115.54413 * 328.92945 * 21 12 10 36 36 H 1.08997 * 117.49917 * 359.97438 * 22 21 12 37 37 H 1.08996 * 117.50072 * 145.02102 * 22 21 12 38 38 H 1.08999 * 117.50328 * 252.51493 * 23 22 21 39 39 H 1.08999 * 117.52079 * 107.47704 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 1 3.5378 3.2573 0.8429 8 6 3.5608 3.4042 -1.3062 9 6 5.5229 2.8234 0.1274 10 6 5.9401 4.2662 0.2515 11 8 5.1021 5.1430 0.2395 12 7 7.2445 4.5823 0.3747 13 6 7.6236 5.8944 0.4932 14 1 8.4666 6.2659 -0.0705 15 6 6.9232 6.7464 1.3383 16 7 6.1506 6.2501 2.2784 17 14 7.0799 8.5970 1.1383 18 1 6.6271 8.9880 -0.2208 19 1 6.2392 9.2778 2.1556 20 1 8.4984 8.9964 1.3215 21 6 8.2568 3.5233 0.3875 22 6 9.7126 3.9403 0.6058 23 6 9.2480 3.4794 -0.7772 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7807 0.8909 29 1 2.4761 3.3461 -1.3962 30 1 3.8695 4.4496 -1.3057 31 1 4.0233 2.8888 -2.1480 32 1 5.9848 2.3864 -0.7579 33 1 5.8439 2.2750 1.0130 34 1 5.7198 6.8421 2.9148 35 1 7.9363 2.5718 0.8119 36 1 9.9172 5.0025 0.7395 37 1 10.3503 3.2631 1.1739 38 1 9.5799 2.4990 -1.1188 39 1 9.1466 4.2381 -1.5532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288260207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = -112.574855 kcal Electronic energy + Delta-G solvation = -21245.241094 eV Core-core repulsion = 17960.511230 eV Total energy + Delta-G solvation = -3284.729865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57030 -40.40862 -38.15481 -37.54696 -36.07723 -34.59405 -32.80251 -30.40882 -28.96646 -27.77775 -26.50568 -23.31837 -22.93712 -22.57381 -21.37912 -20.36787 -18.67768 -18.19810 -17.79191 -17.53202 -17.26614 -16.64611 -16.23216 -15.76982 -15.33829 -15.24814 -14.76262 -14.39467 -14.17285 -13.80365 -13.64954 -13.16737 -13.05134 -12.93315 -12.81391 -12.72238 -12.47709 -12.21332 -12.13414 -12.08298 -11.83134 -11.75010 -11.60467 -11.52960 -11.28992 -11.10961 -10.66683 -9.78489 -8.87375 -8.16751 -5.93424 1.23477 1.34442 1.43562 1.46310 1.80103 2.30134 2.51056 3.15003 3.20435 3.43325 3.72637 3.94880 4.03987 4.19375 4.23128 4.32864 4.33443 4.34627 4.44559 4.59074 4.63153 4.71885 4.73536 4.74040 4.83643 4.95807 5.05467 5.06734 5.19101 5.37197 5.42872 5.49799 5.53586 5.55658 5.62235 6.24586 6.80314 7.10271 7.30525 7.80386 8.48725 8.91629 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.005124 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.214414 B = 5462.723511 C = 6372.170332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.459 3.541 4 O -0.541 6.541 5 C -0.099 4.099 6 C -0.055 4.055 7 H 0.038 0.962 8 C -0.146 4.146 9 C -0.114 4.114 10 C 0.466 3.534 11 O -0.582 6.582 12 N -0.450 5.450 13 C -0.354 4.354 14 H 0.073 0.927 15 C 0.023 3.977 16 N -0.873 5.873 17 Si 0.964 3.036 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.256 1.256 21 C 0.048 3.952 22 C -0.176 4.176 23 C -0.179 4.179 24 H 0.135 0.865 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -16.652 -4.823 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.430 6.430 5 C -0.136 4.136 6 C -0.074 4.074 7 H 0.057 0.943 8 C -0.204 4.204 9 C -0.154 4.154 10 C 0.256 3.744 11 O -0.463 6.463 12 N -0.171 5.171 13 C -0.482 4.482 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.508 5.508 17 Si 0.790 3.210 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.180 1.180 21 C -0.057 4.057 22 C -0.214 4.214 23 C -0.218 4.218 24 H 0.153 0.847 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.268 -15.864 -4.708 16.702 hybrid contribution -0.446 1.720 0.323 1.806 sum -2.713 -14.144 -4.385 15.054 Atomic orbital electron populations 1.23504 0.75329 1.05611 1.02134 1.86499 1.24613 1.32747 1.83940 1.24336 0.93198 0.80960 0.71124 1.90677 1.68214 1.37641 1.46494 1.21547 0.85810 0.97720 1.08536 1.20493 0.94370 0.93867 0.98656 0.94329 1.21907 1.00781 1.01072 0.96600 1.21572 0.95565 0.93599 1.04647 1.20870 0.82646 0.91483 0.79433 1.90480 1.51077 1.52236 1.52479 1.43065 1.04223 1.04515 1.65342 1.19000 1.17550 0.85933 1.25725 0.90928 1.25969 0.95435 1.03139 0.93693 1.69922 1.29995 1.36597 1.14308 0.85468 0.78472 0.79840 0.77267 1.20998 1.21588 1.18021 1.22045 0.86637 0.93357 1.03655 1.23095 0.96396 1.01919 0.99989 1.23314 1.03939 1.03156 0.91396 0.84677 0.92653 0.92324 0.84102 0.84976 0.93131 0.94329 0.91397 0.87061 0.88480 0.93443 0.85024 0.90606 0.86506 0.85457 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.14 10.56 -51.42 -0.54 -8.68 16 3 C 0.46 12.74 7.67 71.24 0.55 13.29 16 4 O -0.54 -19.73 13.72 21.98 0.30 -19.43 16 5 C -0.10 -2.29 5.29 29.85 0.16 -2.13 16 6 C -0.05 -1.90 1.68 -10.80 -0.02 -1.92 16 7 H 0.04 1.71 7.77 -2.38 -0.02 1.69 16 8 C -0.15 -5.47 8.67 71.98 0.62 -4.85 16 9 C -0.11 -3.93 3.79 29.85 0.11 -3.82 16 10 C 0.47 23.34 6.68 87.66 0.59 23.92 16 11 O -0.58 -35.18 11.73 -3.09 -0.04 -35.22 16 12 N -0.45 -22.26 2.83 -613.12 -1.74 -24.00 16 13 C -0.35 -19.76 7.93 84.04 0.67 -19.09 16 14 H 0.07 3.94 7.25 -2.91 -0.02 3.92 16 15 C 0.02 1.37 4.38 84.93 0.37 1.74 16 16 N -0.87 -54.23 11.74 21.66 0.25 -53.98 16 17 Si 0.96 47.11 29.59 68.60 2.03 49.14 16 18 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 C 0.05 1.76 5.87 44.99 0.26 2.02 16 22 C -0.18 -5.87 9.80 30.59 0.30 -5.57 16 23 C -0.18 -5.38 10.36 30.59 0.32 -5.06 16 24 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 26 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 27 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.05 1.93 5.96 -2.39 -0.01 1.91 16 30 H 0.04 1.79 5.95 -2.39 -0.01 1.78 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 3.05 8.11 -2.39 -0.02 3.03 16 33 H 0.10 2.92 7.57 -2.39 -0.02 2.90 16 34 H 0.26 15.54 8.32 -92.71 -0.77 14.77 16 35 H 0.13 3.97 6.96 -2.38 -0.02 3.96 16 36 H 0.08 3.00 6.72 -2.39 -0.02 2.98 16 37 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -80.93 322.05 6.43 -74.50 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.04 Total: 17.44 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.13 Total: 0.21 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.48 Total: -77.98 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -0.28 Total: -63.33 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.93 6.43 -74.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288260207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.073 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds