Wall clock time and date at job start Mon Mar 30 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00031 * 2 1 4 4 O 1.20825 * 119.99676 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.91784 * 56.09787 * 5 3 2 7 7 C 1.55392 * 111.18654 * 292.04213 * 5 3 2 8 8 N 1.47431 * 104.87127 * 204.97965 * 7 5 3 9 9 C 1.34777 * 125.64789 * 204.16802 * 8 7 5 10 10 O 1.21277 * 119.99926 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99914 * 359.96268 * 9 8 7 12 12 C 1.52994 * 109.46786 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47118 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00398 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99847 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00147 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46974 * 60.00082 * 17 15 13 19 19 H 1.48499 * 109.46760 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46928 * 299.99907 * 17 15 13 21 21 C 1.47019 * 108.70142 * 24.13359 * 8 7 5 22 22 C 1.54321 * 107.27531 * 358.94050 * 21 8 7 23 23 H 1.09002 * 110.72109 * 96.17040 * 22 21 8 24 24 C 1.53003 * 110.72129 * 219.26706 * 22 21 8 25 25 H 1.08994 * 109.47372 * 299.99793 * 1 2 3 26 26 H 1.09004 * 109.46822 * 59.99979 * 1 2 3 27 27 H 1.09006 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08999 * 110.34334 * 86.13662 * 7 5 3 29 29 H 1.08998 * 110.44545 * 323.87812 * 7 5 3 30 30 H 1.09001 * 109.46884 * 299.99653 * 11 9 8 31 31 H 1.08994 * 109.47114 * 59.99465 * 11 9 8 32 32 H 1.09001 * 109.47065 * 299.99468 * 12 11 9 33 33 H 1.09000 * 109.47462 * 60.00050 * 12 11 9 34 34 H 0.96993 * 119.99970 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.88251 * 239.51790 * 21 8 7 36 36 H 1.09004 * 109.88394 * 118.35703 * 21 8 7 37 37 H 1.08995 * 109.46744 * 56.15366 * 24 22 21 38 38 H 1.09003 * 109.46886 * 176.15524 * 24 22 21 39 39 H 1.08993 * 109.46803 * 296.15500 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9850 0.7280 -0.8442 7 6 4.1550 0.7616 1.3439 8 7 5.4628 1.4315 1.4645 9 6 6.5107 0.9849 2.1849 10 8 7.5431 1.6207 2.2117 11 6 6.3993 -0.3042 2.9574 12 6 7.7179 -0.5796 3.6827 13 6 7.6065 -1.8684 4.4557 14 1 6.6868 -2.4343 4.4323 15 6 8.6780 -2.3247 5.1937 16 7 9.7977 -1.6353 5.2226 17 14 8.5395 -3.9219 6.1525 18 1 8.2476 -5.0372 5.2166 19 1 9.8195 -4.1892 6.8564 20 1 7.4417 -3.8092 7.1461 21 6 5.4348 2.6669 0.6679 22 6 4.0458 2.7505 0.0006 23 1 3.3726 3.3748 0.5881 24 6 4.1634 3.2814 -1.4295 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.2846 -0.3202 1.3121 29 1 3.5076 1.0412 2.1750 30 1 5.5939 -0.2220 3.6872 31 1 6.1846 -1.1223 2.2699 32 1 8.5237 -0.6616 2.9532 33 1 7.9322 0.2386 4.3703 34 1 10.5517 -1.9565 5.7415 35 1 6.2117 2.6332 -0.0959 36 1 5.5869 3.5297 1.3165 37 1 4.8495 2.6515 -1.9956 38 1 3.1822 3.2679 -1.9040 39 1 4.5424 4.3032 -1.4077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291893393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:08 Heat of formation + Delta-G solvation = -133.027127 kcal Electronic energy + Delta-G solvation = -20648.916007 eV Core-core repulsion = 17363.299265 eV Total energy + Delta-G solvation = -3285.616742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07890 -39.59500 -37.61328 -36.57042 -33.48782 -32.96320 -30.97216 -30.66269 -27.85723 -27.07240 -25.22078 -24.24217 -21.99270 -21.22273 -20.09590 -18.81458 -18.05607 -17.20667 -16.86573 -16.61409 -15.92840 -15.42713 -15.02084 -14.44822 -14.38840 -13.97377 -13.83984 -13.43917 -13.26945 -12.94532 -12.69252 -12.38757 -12.28363 -12.14422 -11.99039 -11.39761 -11.26900 -11.13481 -11.11128 -10.96466 -10.89143 -10.75995 -10.60807 -9.95246 -9.66317 -9.20759 -9.04251 -8.50346 -8.30894 -5.95327 -3.99921 1.83824 2.33117 3.17274 3.22669 3.35104 3.39911 3.41688 3.94572 4.21782 4.45628 4.48028 4.73847 4.80491 4.87391 4.87810 5.03290 5.16244 5.22276 5.30535 5.39520 5.43391 5.48812 5.58515 5.65065 5.82480 5.84998 6.01371 6.08328 6.19310 6.21993 6.45648 6.87749 7.40891 7.74453 7.75602 7.86000 8.07408 8.38259 8.69087 9.08110 9.63562 11.15646 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.003991 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.894692 B = 7014.047399 C = 8107.277078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.502 6.502 5 C -0.099 4.099 6 H 0.124 0.876 7 C 0.120 3.880 8 N -0.631 5.631 9 C 0.528 3.472 10 O -0.527 6.527 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.110 3.890 22 C -0.087 4.087 23 H 0.099 0.901 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.398 5.503 -13.504 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.389 6.389 5 C -0.118 4.118 6 H 0.142 0.858 7 C -0.004 4.004 8 N -0.369 5.369 9 C 0.319 3.681 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.013 4.013 22 C -0.106 4.106 23 H 0.117 0.883 24 C -0.199 4.199 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.772 6.115 -13.338 23.046 hybrid contribution -0.391 -0.831 0.496 1.043 sum -18.162 5.284 -12.841 22.863 Atomic orbital electron populations 1.23303 0.76096 1.03926 1.02564 1.86540 1.23592 1.33146 1.83802 1.23301 0.91293 0.81446 0.72094 1.90670 1.66894 1.36355 1.44936 1.22457 0.87535 1.00039 1.01804 0.85772 1.22139 0.85056 0.99032 0.94218 1.48702 1.13439 1.24148 1.50599 1.21374 0.81053 0.87867 0.77809 1.90687 1.28323 1.58743 1.62439 1.21886 1.04405 0.91611 0.98629 1.18916 0.89434 0.96644 0.95116 1.21172 0.99008 1.07068 1.29341 0.92626 1.25021 0.95373 0.97228 0.96702 1.69988 1.03206 1.38566 1.41082 0.86648 0.77258 0.83865 0.80138 1.20234 1.21289 1.20249 1.21988 0.96060 0.88378 0.94895 1.22228 0.96423 0.93431 0.98549 0.88316 1.21763 1.02230 1.01658 0.94294 0.91734 0.91915 0.87889 0.88704 0.90962 0.90214 0.90118 0.95758 0.95791 0.92882 0.91050 0.91153 0.92085 0.92015 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.34 10.57 -39.27 -0.41 -3.76 16 3 C 0.48 4.91 7.29 36.01 0.26 5.17 16 4 O -0.50 -6.20 15.46 -18.75 -0.29 -6.49 16 5 C -0.10 -0.94 3.01 -89.36 -0.27 -1.21 16 6 H 0.12 1.01 8.05 -51.93 -0.42 0.60 16 7 C 0.12 1.35 6.17 -2.26 -0.01 1.34 16 8 N -0.63 -9.37 3.33 -170.21 -0.57 -9.94 16 9 C 0.53 10.41 7.85 -10.98 -0.09 10.32 16 10 O -0.53 -12.66 16.31 5.56 0.09 -12.57 16 11 C -0.13 -2.56 4.65 -27.88 -0.13 -2.69 16 12 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 13 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 C 0.11 1.37 6.46 -3.07 -0.02 1.35 16 22 C -0.09 -0.86 2.66 -88.78 -0.24 -1.09 16 23 H 0.10 1.03 7.39 -51.93 -0.38 0.65 16 24 C -0.14 -1.15 9.14 37.16 0.34 -0.81 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.99 7.47 -51.93 -0.39 0.61 16 29 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.49 7.84 -51.93 -0.41 1.08 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -35.05 330.37 -6.28 -41.33 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.18 Total: -4.33 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 0.38 Total: 0.90 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.17 Total: -36.65 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.61 Total: -22.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.05 -6.28 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291893393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.692 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds