Wall clock time and date at job start Mon Mar 30 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00031 * 2 1 4 4 O 1.20825 * 119.99676 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.91784 * 56.09787 * 5 3 2 7 7 C 1.55392 * 111.18654 * 292.04213 * 5 3 2 8 8 N 1.47431 * 104.87127 * 204.97965 * 7 5 3 9 9 C 1.34777 * 125.64789 * 204.16802 * 8 7 5 10 10 O 1.21277 * 119.99926 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99914 * 359.96268 * 9 8 7 12 12 C 1.52994 * 109.46786 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47118 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00398 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99847 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00147 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46974 * 60.00082 * 17 15 13 19 19 H 1.48499 * 109.46760 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46928 * 299.99907 * 17 15 13 21 21 C 1.47019 * 108.70142 * 24.13359 * 8 7 5 22 22 C 1.54321 * 107.27531 * 358.94050 * 21 8 7 23 23 H 1.09002 * 110.72109 * 96.17040 * 22 21 8 24 24 C 1.53003 * 110.72129 * 219.26706 * 22 21 8 25 25 H 1.08994 * 109.47372 * 299.99793 * 1 2 3 26 26 H 1.09004 * 109.46822 * 59.99979 * 1 2 3 27 27 H 1.09006 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.08999 * 110.34334 * 86.13662 * 7 5 3 29 29 H 1.08998 * 110.44545 * 323.87812 * 7 5 3 30 30 H 1.09001 * 109.46884 * 299.99653 * 11 9 8 31 31 H 1.08994 * 109.47114 * 59.99465 * 11 9 8 32 32 H 1.09001 * 109.47065 * 299.99468 * 12 11 9 33 33 H 1.09000 * 109.47462 * 60.00050 * 12 11 9 34 34 H 0.96993 * 119.99970 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.88251 * 239.51790 * 21 8 7 36 36 H 1.09004 * 109.88394 * 118.35703 * 21 8 7 37 37 H 1.08995 * 109.46744 * 56.15366 * 24 22 21 38 38 H 1.09003 * 109.46886 * 176.15524 * 24 22 21 39 39 H 1.08993 * 109.46803 * 296.15500 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9850 0.7280 -0.8442 7 6 4.1550 0.7616 1.3439 8 7 5.4628 1.4315 1.4645 9 6 6.5107 0.9849 2.1849 10 8 7.5431 1.6207 2.2117 11 6 6.3993 -0.3042 2.9574 12 6 7.7179 -0.5796 3.6827 13 6 7.6065 -1.8684 4.4557 14 1 6.6868 -2.4343 4.4323 15 6 8.6780 -2.3247 5.1937 16 7 9.7977 -1.6353 5.2226 17 14 8.5395 -3.9219 6.1525 18 1 8.2476 -5.0372 5.2166 19 1 9.8195 -4.1892 6.8564 20 1 7.4417 -3.8092 7.1461 21 6 5.4348 2.6669 0.6679 22 6 4.0458 2.7505 0.0006 23 1 3.3726 3.3748 0.5881 24 6 4.1634 3.2814 -1.4295 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.2846 -0.3202 1.3121 29 1 3.5076 1.0412 2.1750 30 1 5.5939 -0.2220 3.6872 31 1 6.1846 -1.1223 2.2699 32 1 8.5237 -0.6616 2.9532 33 1 7.9322 0.2386 4.3703 34 1 10.5517 -1.9565 5.7415 35 1 6.2117 2.6332 -0.0959 36 1 5.5869 3.5297 1.3165 37 1 4.8495 2.6515 -1.9956 38 1 3.1822 3.2679 -1.9040 39 1 4.5424 4.3032 -1.4077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291893393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:08 Heat of formation + Delta-G solvation = -155.934477 kcal Electronic energy + Delta-G solvation = -20649.909344 eV Core-core repulsion = 17363.299265 eV Total energy + Delta-G solvation = -3286.610079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94347 -40.83185 -38.80953 -37.43143 -35.57111 -34.13606 -32.84666 -31.57935 -28.56001 -28.44522 -26.76478 -25.29719 -23.48336 -22.43322 -20.95576 -20.21570 -18.97211 -18.68496 -17.93461 -17.68787 -17.30044 -16.72534 -16.50446 -16.33318 -15.43726 -14.93436 -14.73741 -14.58567 -14.28862 -14.15202 -13.93561 -13.74865 -13.45339 -13.32186 -13.08983 -12.87869 -12.76082 -12.51191 -12.17883 -12.07694 -11.92980 -11.79767 -11.74175 -11.63570 -11.55131 -11.30705 -10.77988 -10.54119 -9.76074 -8.16045 -6.30240 1.03632 1.43990 1.48581 1.56060 1.57606 1.64663 2.02495 2.45171 3.10153 3.17060 3.31904 3.70376 3.91863 3.99315 4.06614 4.15556 4.33883 4.37942 4.42214 4.46143 4.49909 4.57572 4.66513 4.74292 4.76946 4.81824 4.95743 5.02499 5.13464 5.29752 5.31601 5.36799 5.51590 5.63462 5.86258 6.18572 6.38404 6.65538 6.87799 7.18560 7.40085 8.96566 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.003991 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.894692 B = 7014.047399 C = 8107.277078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.483 3.517 4 O -0.524 6.524 5 C -0.090 4.090 6 H 0.144 0.856 7 C 0.112 3.888 8 N -0.622 5.622 9 C 0.527 3.473 10 O -0.585 6.585 11 C -0.113 4.113 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.263 1.263 21 C 0.105 3.895 22 C -0.076 4.076 23 H 0.094 0.906 24 C -0.138 4.138 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.108 0.892 32 H -0.016 1.016 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 3.839 -14.226 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.326 3.674 4 O -0.413 6.413 5 C -0.110 4.110 6 H 0.162 0.838 7 C -0.011 4.011 8 N -0.357 5.357 9 C 0.318 3.682 10 O -0.464 6.464 11 C -0.153 4.153 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.017 4.017 22 C -0.095 4.095 23 H 0.112 0.888 24 C -0.195 4.195 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.002 0.998 33 H 0.000 1.000 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.455 4.441 -14.095 25.235 hybrid contribution 0.342 -0.268 0.679 0.806 sum -20.113 4.173 -13.416 24.535 Atomic orbital electron populations 1.23576 0.74567 1.05756 1.02662 1.86528 1.25108 1.32445 1.83362 1.23264 0.91287 0.81405 0.71445 1.90670 1.67388 1.37154 1.46116 1.22418 0.87381 0.99723 1.01437 0.83789 1.22413 0.83195 0.99763 0.95697 1.48523 1.13463 1.24807 1.48877 1.21109 0.81355 0.87466 0.78229 1.90665 1.30832 1.60203 1.64719 1.21636 1.01131 0.93187 0.99312 1.18702 0.91830 0.95213 0.93848 1.21673 0.99833 1.07448 1.29111 0.90460 1.26135 0.94822 1.01476 0.97931 1.70174 1.04334 1.40994 1.42338 0.85374 0.77419 0.78771 0.78682 1.18553 1.21447 1.18725 1.22162 0.97994 0.86967 0.94566 1.22136 0.94209 0.93881 0.99308 0.88801 1.21746 1.02689 1.02153 0.92950 0.91922 0.91602 0.85268 0.87157 0.90077 0.88017 0.87417 0.99768 1.00046 0.92870 0.91037 0.91980 0.91231 0.91653 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.73 10.57 -51.45 -0.54 -6.28 16 3 C 0.48 8.72 7.29 71.24 0.52 9.24 16 4 O -0.52 -11.92 15.46 21.97 0.34 -11.58 16 5 C -0.09 -1.48 3.01 -9.98 -0.03 -1.51 16 6 H 0.14 1.85 8.05 -2.39 -0.02 1.83 16 7 C 0.11 2.24 6.17 87.02 0.54 2.78 16 8 N -0.62 -17.83 3.33 -810.82 -2.70 -20.53 16 9 C 0.53 20.99 7.85 87.66 0.69 21.68 16 10 O -0.58 -29.40 16.31 -3.02 -0.05 -29.45 16 11 C -0.11 -4.56 4.65 29.85 0.14 -4.43 16 12 C 0.04 2.33 4.26 29.85 0.13 2.46 16 13 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 14 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 15 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 16 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 17 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 C 0.11 2.55 6.46 86.73 0.56 3.11 16 22 C -0.08 -1.36 2.66 -9.60 -0.03 -1.38 16 23 H 0.09 1.81 7.39 -2.39 -0.02 1.80 16 24 C -0.14 -1.93 9.14 71.98 0.66 -1.27 16 25 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 26 H 0.07 0.68 8.13 -2.38 -0.02 0.66 16 27 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.11 1.93 7.47 -2.39 -0.02 1.91 16 29 H 0.08 1.54 8.04 -2.39 -0.02 1.53 16 30 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.11 3.74 7.84 -2.39 -0.02 3.73 16 32 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 33 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -79.00 330.37 5.45 -73.55 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.02 Total: 5.83 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.07 Total: 1.76 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.41 Total: -79.88 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.25 Total: -47.30 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.00 5.45 -73.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291893393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.380 kcal (2) G-P(sol) polarization free energy of solvation -79.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds