Wall clock time and date at job start Mon Mar 30 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46690 * 2 1 4 4 C 1.53004 * 109.47088 * 119.99794 * 2 1 3 5 5 C 1.52994 * 109.46971 * 65.43359 * 4 2 1 6 6 H 1.09004 * 109.47295 * 305.72362 * 5 4 2 7 7 C 1.53001 * 109.47104 * 185.72750 * 5 4 2 8 8 S 1.80997 * 109.47247 * 65.72831 * 5 4 2 9 9 C 1.76201 * 99.99859 * 185.00077 * 8 5 4 10 10 N 1.32385 * 126.26066 * 0.02562 * 9 8 5 11 11 N 1.28519 * 110.20266 * 179.97438 * 10 9 8 12 12 C 1.33093 * 109.74787 * 0.02562 * 11 10 9 13 13 C 1.39778 * 126.56463 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00127 * 186.24247 * 13 12 11 15 15 C 1.40081 * 119.99695 * 6.24388 * 13 12 11 16 16 N 1.30806 * 120.00431 * 6.48778 * 15 13 12 17 17 Si 1.86806 * 119.99700 * 186.48853 * 15 13 12 18 18 H 1.48498 * 109.47188 * 265.01320 * 17 15 13 19 19 H 1.48502 * 109.46973 * 25.01457 * 17 15 13 20 20 H 1.48501 * 109.46917 * 145.01252 * 17 15 13 21 21 N 1.36678 * 126.25620 * 180.30031 * 9 8 5 22 22 C 1.46496 * 127.15327 * 0.02562 * 21 9 8 23 23 H 1.09002 * 109.47404 * 299.99821 * 1 2 3 24 24 H 1.08999 * 109.47143 * 60.00086 * 1 2 3 25 25 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47114 * 239.99867 * 2 1 3 27 27 H 1.08998 * 109.46846 * 184.72876 * 3 2 1 28 28 H 1.09005 * 109.47340 * 304.72307 * 3 2 1 29 29 H 1.09001 * 109.47537 * 64.73098 * 3 2 1 30 30 H 1.08995 * 109.46715 * 305.43068 * 4 2 1 31 31 H 1.09001 * 109.46715 * 185.43383 * 4 2 1 32 32 H 1.08998 * 109.47118 * 300.00049 * 7 5 4 33 33 H 1.09004 * 109.47169 * 59.99733 * 7 5 4 34 34 H 1.08998 * 109.47349 * 179.97438 * 7 5 4 35 35 H 0.96998 * 120.00666 * 180.02562 * 16 15 13 36 36 H 1.08991 * 109.47559 * 270.20752 * 22 21 9 37 37 H 1.09002 * 109.47117 * 30.21590 * 22 21 9 38 38 H 1.09007 * 109.47128 * 150.21008 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6446 -2.1977 1.1829 6 1 0.5683 -2.2791 1.0307 7 6 2.0279 -2.8878 2.4935 8 16 2.5104 -2.9929 -0.1933 9 6 1.7759 -4.5933 -0.1331 10 7 0.8521 -4.9991 0.7240 11 7 0.5357 -6.2225 0.4894 12 6 1.2434 -6.6803 -0.5407 13 6 1.1786 -7.9637 -1.0906 14 1 1.8738 -8.2557 -1.8638 15 6 0.2118 -8.8712 -0.6389 16 7 -0.7092 -8.4804 0.2037 17 14 0.2379 -10.6398 -1.2398 18 1 -0.6804 -10.7827 -2.3980 19 1 1.6173 -11.0014 -1.6543 20 1 -0.2023 -11.5412 -0.1449 21 7 2.0594 -5.6445 -0.9594 22 6 3.0246 -5.6685 -2.0612 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1266 1.4437 -0.0847 28 1 1.6091 1.9802 -0.8447 29 1 1.7474 1.9314 0.9293 30 1 1.5994 -0.2666 2.1365 31 1 3.1257 -0.6377 1.2992 32 1 3.1042 -2.8064 2.6458 33 1 1.5065 -2.4089 3.3224 34 1 1.7458 -3.9396 2.4464 35 1 -1.3785 -9.1088 0.5168 36 1 2.5319 -5.3585 -2.9826 37 1 3.8451 -4.9858 -1.8403 38 1 3.4150 -6.6792 -2.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295141550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:49 Heat of formation + Delta-G solvation = 41.102062 kcal Electronic energy + Delta-G solvation = -18562.014101 eV Core-core repulsion = 15758.993790 eV Total energy + Delta-G solvation = -2803.020311 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47573 -37.10335 -33.69744 -33.32621 -32.51614 -29.28316 -27.15052 -26.66151 -26.30416 -25.40466 -21.81143 -20.77793 -20.42058 -19.85065 -17.32911 -16.20144 -15.80521 -15.33494 -14.68553 -14.45443 -14.33591 -13.94840 -13.52489 -13.27694 -12.55715 -12.44331 -12.27601 -12.20807 -12.15050 -11.77328 -11.56919 -11.36384 -11.26518 -11.19554 -10.90914 -10.66256 -10.54299 -10.41769 -10.30666 -9.76882 -9.60754 -9.52502 -8.65899 -8.40501 -8.31332 -6.77127 -6.64817 -4.54038 2.16816 2.90437 2.92718 3.07315 3.11291 3.39095 3.88785 4.26875 4.43751 4.77275 4.92372 4.97982 5.33646 5.38265 5.49326 5.56767 5.57693 5.66789 5.76122 5.83160 5.90846 5.91346 5.98319 6.03292 6.05961 6.13429 6.19352 6.32689 6.45656 6.54605 6.73424 6.84737 6.96553 7.27054 7.51974 7.93338 8.20295 8.72372 8.88631 10.28889 10.67080 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.036793 B = 0.004501 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.839172 B = 6218.929084 C = 6449.305186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.096 4.096 5 C -0.059 4.059 6 H 0.098 0.902 7 C -0.148 4.148 8 S -0.062 6.062 9 C 0.052 3.948 10 N -0.284 5.284 11 N -0.337 5.337 12 C 0.347 3.653 13 C -0.450 4.450 14 H 0.083 0.917 15 C 0.081 3.919 16 N -0.739 5.739 17 Si 0.919 3.081 18 H -0.270 1.270 19 H -0.262 1.262 20 H -0.274 1.274 21 N -0.516 5.516 22 C 0.102 3.898 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.279 0.721 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 11.572 -1.582 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.202 4.202 4 C -0.135 4.135 5 C -0.189 4.189 6 H 0.117 0.883 7 C -0.207 4.207 8 S 0.165 5.835 9 C -0.320 4.320 10 N -0.130 5.130 11 N -0.184 5.184 12 C 0.102 3.898 13 C -0.491 4.491 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.363 5.363 17 Si 0.743 3.257 18 H -0.195 1.195 19 H -0.186 1.186 20 H -0.199 1.199 21 N -0.218 5.218 22 C -0.043 4.043 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.154 12.028 -1.008 13.125 hybrid contribution -0.019 -1.504 -0.657 1.641 sum 5.135 10.524 -1.665 11.828 Atomic orbital electron populations 1.21880 0.95171 1.02328 1.01199 1.21232 0.96219 0.95790 0.98934 1.21828 1.00750 0.96168 1.01464 1.21562 1.01240 0.92203 0.98460 1.23135 1.03384 0.96141 0.96206 0.88335 1.22093 1.00735 1.03306 0.94563 1.84307 1.54403 1.01228 1.43582 1.25373 1.09375 0.95149 1.02101 1.74457 1.09946 1.08688 1.19875 1.75419 1.25197 1.00930 1.16875 1.21599 0.86914 0.89354 0.91886 1.18084 1.16462 0.93280 1.21240 0.89862 1.25765 0.93966 1.00658 0.94058 1.69984 1.09211 1.35898 1.21204 0.86136 0.79560 0.80983 0.79035 1.19512 1.18596 1.19925 1.46072 1.36321 1.10607 1.28787 1.21475 0.91372 1.02844 0.88589 0.92991 0.92957 0.92003 0.90079 0.92880 0.92837 0.92935 0.90669 0.91393 0.92829 0.92738 0.89573 0.91005 0.92581 0.91599 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.96 37.16 0.33 -1.43 16 2 C -0.10 -1.20 2.83 -90.62 -0.26 -1.46 16 3 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.10 -1.18 4.13 -26.73 -0.11 -1.29 16 5 C -0.06 -0.95 2.21 -26.73 -0.06 -1.01 16 6 H 0.10 1.77 6.33 -51.91 -0.33 1.44 16 7 C -0.15 -2.46 9.01 37.16 0.33 -2.13 16 8 S -0.06 -1.14 20.00 -107.50 -2.15 -3.29 16 9 C 0.05 1.25 7.77 -87.27 -0.68 0.57 16 10 N -0.28 -7.74 9.74 30.89 0.30 -7.44 16 11 N -0.34 -10.16 10.56 31.26 0.33 -9.83 16 12 C 0.35 9.78 7.50 -154.81 -1.16 8.62 16 13 C -0.45 -12.04 9.05 -38.32 -0.35 -12.39 16 14 H 0.08 2.02 7.26 -52.49 -0.38 1.64 16 15 C 0.08 2.08 5.49 -17.30 -0.09 1.99 16 16 N -0.74 -20.43 12.00 55.56 0.67 -19.76 16 17 Si 0.92 18.64 29.57 -169.99 -5.03 13.62 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 N -0.52 -12.60 3.26 -123.18 -0.40 -13.00 16 22 C 0.10 1.90 10.89 59.84 0.65 2.55 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.86 6.46 -51.93 -0.34 0.53 16 26 H 0.08 1.05 7.00 -51.93 -0.36 0.69 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.79 5.89 -51.93 -0.31 1.49 16 35 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 38 H 0.08 1.35 7.48 -51.92 -0.39 0.96 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -31.75 321.49 -8.35 -40.11 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.87 Total: 1.74 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.05 Total: -7.01 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.90 Total: -50.02 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.15 Total: -3.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.75 -8.35 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295141550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.208 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds