Wall clock time and date at job start Mon Mar 30 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46690 * 2 1 4 4 C 1.53004 * 109.47088 * 119.99794 * 2 1 3 5 5 C 1.52994 * 109.46971 * 65.43359 * 4 2 1 6 6 H 1.09004 * 109.47295 * 305.72362 * 5 4 2 7 7 C 1.53001 * 109.47104 * 185.72750 * 5 4 2 8 8 S 1.80997 * 109.47247 * 65.72831 * 5 4 2 9 9 C 1.76201 * 99.99859 * 185.00077 * 8 5 4 10 10 N 1.32385 * 126.26066 * 0.02562 * 9 8 5 11 11 N 1.28519 * 110.20266 * 179.97438 * 10 9 8 12 12 C 1.33093 * 109.74787 * 0.02562 * 11 10 9 13 13 C 1.39778 * 126.56463 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00127 * 186.24247 * 13 12 11 15 15 C 1.40081 * 119.99695 * 6.24388 * 13 12 11 16 16 N 1.30806 * 120.00431 * 6.48778 * 15 13 12 17 17 Si 1.86806 * 119.99700 * 186.48853 * 15 13 12 18 18 H 1.48498 * 109.47188 * 265.01320 * 17 15 13 19 19 H 1.48502 * 109.46973 * 25.01457 * 17 15 13 20 20 H 1.48501 * 109.46917 * 145.01252 * 17 15 13 21 21 N 1.36678 * 126.25620 * 180.30031 * 9 8 5 22 22 C 1.46496 * 127.15327 * 0.02562 * 21 9 8 23 23 H 1.09002 * 109.47404 * 299.99821 * 1 2 3 24 24 H 1.08999 * 109.47143 * 60.00086 * 1 2 3 25 25 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47114 * 239.99867 * 2 1 3 27 27 H 1.08998 * 109.46846 * 184.72876 * 3 2 1 28 28 H 1.09005 * 109.47340 * 304.72307 * 3 2 1 29 29 H 1.09001 * 109.47537 * 64.73098 * 3 2 1 30 30 H 1.08995 * 109.46715 * 305.43068 * 4 2 1 31 31 H 1.09001 * 109.46715 * 185.43383 * 4 2 1 32 32 H 1.08998 * 109.47118 * 300.00049 * 7 5 4 33 33 H 1.09004 * 109.47169 * 59.99733 * 7 5 4 34 34 H 1.08998 * 109.47349 * 179.97438 * 7 5 4 35 35 H 0.96998 * 120.00666 * 180.02562 * 16 15 13 36 36 H 1.08991 * 109.47559 * 270.20752 * 22 21 9 37 37 H 1.09002 * 109.47117 * 30.21590 * 22 21 9 38 38 H 1.09007 * 109.47128 * 150.21008 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6446 -2.1977 1.1829 6 1 0.5683 -2.2791 1.0307 7 6 2.0279 -2.8878 2.4935 8 16 2.5104 -2.9929 -0.1933 9 6 1.7759 -4.5933 -0.1331 10 7 0.8521 -4.9991 0.7240 11 7 0.5357 -6.2225 0.4894 12 6 1.2434 -6.6803 -0.5407 13 6 1.1786 -7.9637 -1.0906 14 1 1.8738 -8.2557 -1.8638 15 6 0.2118 -8.8712 -0.6389 16 7 -0.7092 -8.4804 0.2037 17 14 0.2379 -10.6398 -1.2398 18 1 -0.6804 -10.7827 -2.3980 19 1 1.6173 -11.0014 -1.6543 20 1 -0.2023 -11.5412 -0.1449 21 7 2.0594 -5.6445 -0.9594 22 6 3.0246 -5.6685 -2.0612 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1266 1.4437 -0.0847 28 1 1.6091 1.9802 -0.8447 29 1 1.7474 1.9314 0.9293 30 1 1.5994 -0.2666 2.1365 31 1 3.1257 -0.6377 1.2992 32 1 3.1042 -2.8064 2.6458 33 1 1.5065 -2.4089 3.3224 34 1 1.7458 -3.9396 2.4464 35 1 -1.3785 -9.1088 0.5168 36 1 2.5319 -5.3585 -2.9826 37 1 3.8451 -4.9858 -1.8403 38 1 3.4150 -6.6792 -2.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295141550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:49 Heat of formation + Delta-G solvation = 23.515064 kcal Electronic energy + Delta-G solvation = -18562.776731 eV Core-core repulsion = 15758.993790 eV Total energy + Delta-G solvation = -2803.782941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.42741 -38.13515 -35.62368 -35.14516 -33.73170 -31.25588 -28.29096 -28.00178 -27.66727 -27.18746 -23.17675 -22.74009 -22.11120 -20.89375 -19.24142 -17.83722 -17.30891 -16.88666 -16.50892 -16.03430 -15.39947 -15.38492 -14.95292 -14.59612 -13.99928 -13.86642 -13.66503 -13.55118 -13.26516 -13.01590 -12.96624 -12.78940 -12.70581 -12.63928 -12.42815 -11.99505 -11.68515 -11.67686 -11.56232 -11.40070 -11.32015 -11.10262 -10.54060 -10.33198 -10.20207 -8.56122 -8.46443 -6.55998 0.56537 1.21393 1.35337 1.41207 1.58071 1.62750 2.18794 2.46444 2.53073 3.34485 3.69566 3.87935 4.04902 4.08183 4.26796 4.41451 4.44128 4.45618 4.60448 4.76337 4.81732 4.84882 4.89616 4.91662 4.95936 4.98713 5.05628 5.12592 5.14915 5.30573 5.35580 5.44947 5.51139 5.55369 5.58894 6.07976 6.23064 6.76685 6.94221 8.41494 8.67525 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.036793 B = 0.004501 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.839172 B = 6218.929084 C = 6449.305186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.087 4.087 5 C -0.059 4.059 6 H 0.077 0.923 7 C -0.144 4.144 8 S -0.018 6.018 9 C 0.058 3.942 10 N -0.322 5.322 11 N -0.393 5.393 12 C 0.318 3.682 13 C -0.476 4.476 14 H 0.102 0.898 15 C 0.032 3.968 16 N -0.791 5.791 17 Si 1.006 2.994 18 H -0.260 1.260 19 H -0.248 1.248 20 H -0.271 1.271 21 N -0.523 5.523 22 C 0.094 3.906 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.284 0.716 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 12.796 -2.500 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.197 4.197 4 C -0.127 4.127 5 C -0.189 4.189 6 H 0.095 0.905 7 C -0.203 4.203 8 S 0.209 5.791 9 C -0.315 4.315 10 N -0.167 5.167 11 N -0.239 5.239 12 C 0.071 3.929 13 C -0.516 4.516 14 H 0.120 0.880 15 C -0.189 4.189 16 N -0.416 5.416 17 Si 0.824 3.176 18 H -0.185 1.185 19 H -0.172 1.172 20 H -0.196 1.196 21 N -0.225 5.225 22 C -0.048 4.048 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.838 13.271 -1.938 15.054 hybrid contribution -0.478 -1.666 -0.359 1.770 sum 6.360 11.605 -2.297 13.432 Atomic orbital electron populations 1.21874 0.95593 1.00738 1.02329 1.21222 0.95861 0.97261 0.97802 1.21777 1.01189 0.94285 1.02421 1.21588 1.02234 0.89033 0.99797 1.23298 1.01987 0.98519 0.95060 0.90511 1.22012 1.01936 1.00645 0.95707 1.84092 1.53407 0.96934 1.44674 1.26496 1.07558 0.97366 1.00099 1.74364 1.12201 1.08317 1.21771 1.75276 1.27375 1.02453 1.18782 1.22018 0.87876 0.90754 0.92287 1.18601 1.17506 0.93432 1.22097 0.88047 1.26955 0.92762 1.05642 0.93544 1.70129 1.10404 1.38011 1.23046 0.84859 0.80237 0.73977 0.78479 1.18456 1.17155 1.19610 1.46418 1.36572 1.09800 1.29704 1.21820 0.91107 1.04403 0.87508 0.91662 0.92117 0.94888 0.91594 0.92123 0.92197 0.91788 0.88551 0.90004 0.91283 0.90510 0.94151 0.90563 0.90997 0.89157 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.96 71.98 0.65 -2.67 16 2 C -0.10 -2.15 2.83 -10.79 -0.03 -2.18 16 3 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 4 C -0.09 -1.92 4.13 30.59 0.13 -1.79 16 5 C -0.06 -1.86 2.21 30.59 0.07 -1.79 16 6 H 0.08 2.80 6.33 -2.39 -0.02 2.79 16 7 C -0.14 -4.72 9.01 71.98 0.65 -4.07 16 8 S -0.02 -0.62 20.00 -56.49 -1.13 -1.75 16 9 C 0.06 2.86 7.77 179.18 1.39 4.26 16 10 N -0.32 -18.42 9.74 -56.17 -0.55 -18.97 16 11 N -0.39 -24.91 10.56 -55.02 -0.58 -25.50 16 12 C 0.32 18.51 7.50 133.23 1.00 19.51 16 13 C -0.48 -25.97 9.05 23.09 0.21 -25.76 16 14 H 0.10 4.91 7.26 -2.91 -0.02 4.89 16 15 C 0.03 1.65 5.49 85.29 0.47 2.12 16 16 N -0.79 -45.54 12.00 21.85 0.26 -45.28 16 17 Si 1.01 38.35 29.57 68.60 2.03 40.38 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 19 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 N -0.52 -25.87 3.26 -543.63 -1.77 -27.64 16 22 C 0.09 3.40 10.89 127.77 1.39 4.79 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.03 0.92 6.46 -2.39 -0.02 0.90 16 26 H 0.07 1.58 7.00 -2.39 -0.02 1.57 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.04 1.72 5.89 -2.39 -0.01 1.71 16 35 H 0.28 14.76 8.30 -92.71 -0.77 13.99 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 38 H 0.09 2.96 7.48 -2.38 -0.02 2.94 16 Total: -1.00 -73.60 321.49 5.88 -67.72 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.04 Total: 20.13 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.58 Total: -9.10 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -2.64 Total: -117.38 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.13 Total: -1.75 kcal Total: -73.60 5.88 -67.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295141550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.236 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds