Wall clock time and date at job start Mon Mar 30 2020 01:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47049 * 2 1 4 4 C 1.52999 * 109.46764 * 239.99524 * 2 1 3 5 5 N 1.46897 * 109.47241 * 65.00631 * 4 2 1 6 6 C 1.46904 * 111.00299 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46897 * 179.97438 * 6 5 4 8 8 C 1.50711 * 109.46845 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99497 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99781 * 180.02562 * 8 7 6 11 11 N 1.31524 * 119.99635 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00437 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.46750 * 90.00030 * 12 10 8 14 14 H 1.48502 * 109.47334 * 209.99888 * 12 10 8 15 15 H 1.48500 * 109.47155 * 330.00421 * 12 10 8 16 16 C 1.50701 * 109.46705 * 120.00018 * 2 1 3 17 17 C 1.38210 * 119.96838 * 239.99238 * 16 2 1 18 18 C 1.38474 * 120.02023 * 179.70311 * 17 16 2 19 19 F 1.35099 * 120.01073 * 180.26007 * 18 17 16 20 20 C 1.38415 * 119.97981 * 0.28104 * 18 17 16 21 21 C 1.38420 * 119.94757 * 0.02562 * 20 18 17 22 22 F 1.35097 * 120.01373 * 179.97438 * 21 20 18 23 23 C 1.38201 * 119.97992 * 60.25449 * 16 2 1 24 24 H 1.08996 * 109.46893 * 300.00214 * 1 2 3 25 25 H 1.09000 * 109.46781 * 60.00284 * 1 2 3 26 26 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47061 * 185.00103 * 4 2 1 28 28 H 1.08998 * 109.47878 * 305.00175 * 4 2 1 29 29 H 1.00896 * 111.00318 * 56.03785 * 5 4 2 30 30 H 1.08995 * 109.46850 * 299.99449 * 6 5 4 31 31 H 1.09003 * 109.46848 * 59.99469 * 6 5 4 32 32 H 1.09000 * 109.47649 * 299.99357 * 7 6 5 33 33 H 1.09003 * 109.47428 * 60.00287 * 7 6 5 34 34 H 0.96996 * 119.99720 * 180.02562 * 11 10 8 35 35 H 1.08002 * 119.99274 * 359.97438 * 17 16 2 36 36 H 1.08001 * 120.02888 * 179.97438 * 20 18 17 37 37 H 1.08002 * 119.98829 * 359.97438 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1258 -0.6268 -3.6672 7 6 1.7024 0.1907 -4.8892 8 6 2.1895 -0.4902 -6.1423 9 1 2.7451 -1.4138 -6.0738 10 6 1.9259 0.0660 -7.3760 11 7 2.3506 -0.5285 -8.4697 12 14 0.9644 1.6631 -7.4944 13 1 1.9053 2.8114 -7.4544 14 1 0.2045 1.6901 -8.7700 15 1 0.0192 1.7576 -6.3530 16 6 2.0323 -0.7104 1.2305 17 6 2.8269 -0.0382 2.1398 18 6 3.2840 -0.6881 3.2739 19 9 4.0564 -0.0293 4.1653 20 6 2.9495 -2.0132 3.4939 21 6 2.1588 -2.6872 2.5793 22 9 1.8320 -3.9807 2.7923 23 6 1.7025 -2.0351 1.4461 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6054 -1.7199 -1.2951 29 1 1.9882 0.9871 -2.3967 30 1 3.2126 -0.7039 -3.6401 31 1 1.6920 -1.6248 -3.7299 32 1 0.6154 0.2676 -4.9162 33 1 2.1358 1.1889 -4.8266 34 1 2.1655 -0.1370 -9.3376 35 1 3.0880 0.9956 1.9680 36 1 3.3059 -2.5210 4.3779 37 1 1.0846 -2.5605 0.7329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295554998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:18 Heat of formation + Delta-G solvation = -84.858169 kcal Electronic energy + Delta-G solvation = -19466.666265 eV Core-core repulsion = 16072.050771 eV Total energy + Delta-G solvation = -3394.615495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.31926 -49.28049 -39.71807 -36.77911 -34.31408 -32.57497 -30.70899 -30.32228 -29.16644 -25.93498 -24.18794 -23.30233 -22.65913 -20.77821 -20.15561 -18.00408 -17.39379 -16.78730 -16.72882 -16.28815 -16.00661 -15.59951 -15.43576 -14.84336 -14.61469 -14.45519 -14.09751 -13.49907 -13.10424 -13.03603 -12.77768 -12.47186 -12.28415 -12.22932 -12.09549 -11.58802 -11.29998 -11.18747 -10.97126 -10.86394 -10.09214 -9.90080 -9.77960 -9.25129 -9.19821 -9.07803 -8.55100 -8.00763 -6.05725 -4.04413 0.64345 0.64781 3.01622 3.30847 3.38611 3.43878 3.49435 4.00973 4.11948 4.44892 4.46013 4.54188 4.71314 4.84012 4.85840 5.08698 5.21020 5.28790 5.46603 5.51525 5.61825 5.67320 5.68235 5.72218 5.88616 5.92217 6.15236 6.17849 6.25686 6.32989 6.44745 6.73779 7.07916 7.34192 7.55406 7.70953 7.85958 8.51465 8.98278 9.56461 11.07648 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031222 B = 0.003104 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.597419 B = 9017.937158 C = 9292.302383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 H 0.084 0.916 4 C 0.065 3.935 5 N -0.692 5.692 6 C 0.073 3.927 7 C -0.009 4.009 8 C -0.522 4.522 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.882 3.118 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.011 4.011 17 C -0.162 4.162 18 C 0.131 3.869 19 F -0.133 7.133 20 C -0.201 4.201 21 C 0.133 3.867 22 F -0.131 7.131 23 C -0.157 4.157 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.335 0.665 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.009 0.991 34 H 0.263 0.737 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 0.191 25.048 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.072 4.072 3 H 0.102 0.898 4 C -0.064 4.064 5 N -0.322 5.322 6 C -0.055 4.055 7 C -0.047 4.047 8 C -0.561 4.561 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.543 5.543 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.012 4.012 17 C -0.181 4.181 18 C 0.112 3.888 19 F -0.111 7.111 20 C -0.221 4.221 21 C 0.113 3.887 22 F -0.110 7.110 23 C -0.176 4.176 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.578 -0.119 24.851 24.902 hybrid contribution 0.727 0.789 0.097 1.077 sum -0.852 0.671 24.949 24.972 Atomic orbital electron populations 1.21761 0.92754 1.02397 1.02412 1.20270 0.97494 0.99069 0.90350 0.89782 1.21980 0.97435 0.97913 0.89111 1.60598 1.64346 1.05579 1.01683 1.21960 0.96521 0.98559 0.88413 1.19543 0.97262 0.95099 0.92806 1.21076 1.35727 1.10054 0.89241 0.91141 1.25018 0.95374 0.97398 0.95675 1.69920 1.46684 1.39833 0.97848 0.86738 0.80737 0.83956 0.77635 1.20407 1.21434 1.18734 1.19619 0.93553 0.92683 0.95324 1.21158 1.01120 1.01813 0.94010 1.17249 0.93110 0.90009 0.88477 1.91533 1.72419 1.80552 1.66608 1.20988 1.03999 0.94495 1.02589 1.17268 0.97350 0.79014 0.95037 1.91540 1.90766 1.33924 1.94748 1.21137 1.03498 0.95375 0.97619 0.93248 0.90212 0.92595 0.95388 0.90859 0.84798 0.95977 0.91687 0.95624 0.97305 0.92709 0.83968 0.83617 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.90 37.16 0.33 -1.00 16 2 C -0.05 -0.52 2.70 -91.77 -0.25 -0.77 16 3 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 4 C 0.07 0.81 4.81 -3.83 -0.02 0.79 16 5 N -0.69 -10.57 5.96 -113.78 -0.68 -11.25 16 6 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 7 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 8 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 9 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 12 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 16 C -0.01 -0.10 4.78 -104.64 -0.50 -0.60 16 17 C -0.16 -1.46 9.65 -39.50 -0.38 -1.84 16 18 C 0.13 1.23 7.30 -39.43 -0.29 0.95 16 19 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 20 C -0.20 -1.82 10.01 -39.45 -0.39 -2.22 16 21 C 0.13 1.29 7.30 -39.43 -0.29 1.01 16 22 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 23 C -0.16 -1.50 8.74 -39.51 -0.35 -1.85 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 26 H 0.05 0.54 7.40 -51.93 -0.38 0.15 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.92 7.55 -51.93 -0.39 0.52 16 29 H 0.33 4.78 8.73 -39.29 -0.34 4.44 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.14 1.06 7.94 -52.49 -0.42 0.65 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.28 7.16 -52.49 -0.38 0.91 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -30.14 318.02 -7.60 -37.74 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.19 Total: -0.74 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.70 Total: -17.79 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.10 Total: -38.36 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.14 -7.60 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295554998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.121 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds