Wall clock time and date at job start Mon Mar 30 2020 01:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47049 * 2 1 4 4 C 1.52999 * 109.46764 * 239.99524 * 2 1 3 5 5 N 1.46897 * 109.47241 * 65.00631 * 4 2 1 6 6 C 1.46904 * 111.00299 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46897 * 179.97438 * 6 5 4 8 8 C 1.50711 * 109.46845 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99497 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99781 * 180.02562 * 8 7 6 11 11 N 1.31524 * 119.99635 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00437 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.46750 * 90.00030 * 12 10 8 14 14 H 1.48502 * 109.47334 * 209.99888 * 12 10 8 15 15 H 1.48500 * 109.47155 * 330.00421 * 12 10 8 16 16 C 1.50701 * 109.46705 * 120.00018 * 2 1 3 17 17 C 1.38210 * 119.96838 * 239.99238 * 16 2 1 18 18 C 1.38474 * 120.02023 * 179.70311 * 17 16 2 19 19 F 1.35099 * 120.01073 * 180.26007 * 18 17 16 20 20 C 1.38415 * 119.97981 * 0.28104 * 18 17 16 21 21 C 1.38420 * 119.94757 * 0.02562 * 20 18 17 22 22 F 1.35097 * 120.01373 * 179.97438 * 21 20 18 23 23 C 1.38201 * 119.97992 * 60.25449 * 16 2 1 24 24 H 1.08996 * 109.46893 * 300.00214 * 1 2 3 25 25 H 1.09000 * 109.46781 * 60.00284 * 1 2 3 26 26 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47061 * 185.00103 * 4 2 1 28 28 H 1.08998 * 109.47878 * 305.00175 * 4 2 1 29 29 H 1.00896 * 111.00318 * 56.03785 * 5 4 2 30 30 H 1.08995 * 109.46850 * 299.99449 * 6 5 4 31 31 H 1.09003 * 109.46848 * 59.99469 * 6 5 4 32 32 H 1.09000 * 109.47649 * 299.99357 * 7 6 5 33 33 H 1.09003 * 109.47428 * 60.00287 * 7 6 5 34 34 H 0.96996 * 119.99720 * 180.02562 * 11 10 8 35 35 H 1.08002 * 119.99274 * 359.97438 * 17 16 2 36 36 H 1.08001 * 120.02888 * 179.97438 * 20 18 17 37 37 H 1.08002 * 119.98829 * 359.97438 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1258 -0.6268 -3.6672 7 6 1.7024 0.1907 -4.8892 8 6 2.1895 -0.4902 -6.1423 9 1 2.7451 -1.4138 -6.0738 10 6 1.9259 0.0660 -7.3760 11 7 2.3506 -0.5285 -8.4697 12 14 0.9644 1.6631 -7.4944 13 1 1.9053 2.8114 -7.4544 14 1 0.2045 1.6901 -8.7700 15 1 0.0192 1.7576 -6.3530 16 6 2.0323 -0.7104 1.2305 17 6 2.8269 -0.0382 2.1398 18 6 3.2840 -0.6881 3.2739 19 9 4.0564 -0.0293 4.1653 20 6 2.9495 -2.0132 3.4939 21 6 2.1588 -2.6872 2.5793 22 9 1.8320 -3.9807 2.7923 23 6 1.7025 -2.0351 1.4461 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6054 -1.7199 -1.2951 29 1 1.9882 0.9871 -2.3967 30 1 3.2126 -0.7039 -3.6401 31 1 1.6920 -1.6248 -3.7299 32 1 0.6154 0.2676 -4.9162 33 1 2.1358 1.1889 -4.8266 34 1 2.1655 -0.1370 -9.3376 35 1 3.0880 0.9956 1.9680 36 1 3.3059 -2.5210 4.3779 37 1 1.0846 -2.5605 0.7329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295554998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:18 Heat of formation + Delta-G solvation = -102.330440 kcal Electronic energy + Delta-G solvation = -19467.423920 eV Core-core repulsion = 16072.050771 eV Total energy + Delta-G solvation = -3395.373149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.05968 -50.03801 -40.47364 -37.92346 -35.70916 -34.38756 -31.80987 -31.38019 -30.25132 -27.22187 -25.45211 -24.20081 -23.65396 -22.32117 -21.23362 -18.98549 -18.72237 -18.14259 -17.42032 -17.04525 -16.77450 -16.72786 -16.35491 -16.31608 -15.80509 -15.34159 -15.30337 -14.87741 -14.61077 -14.30915 -13.87874 -13.61681 -13.41689 -13.00153 -12.98309 -12.91701 -12.83246 -12.30574 -12.10926 -11.85373 -11.79034 -11.65794 -11.45192 -11.40406 -10.75449 -9.94876 -9.80203 -9.28658 -8.28682 -6.33599 -0.07796 -0.06988 1.38734 1.41602 1.54515 2.29125 2.38627 2.76080 3.07253 3.19744 3.32562 3.63273 3.75850 3.94954 3.99505 4.13043 4.22019 4.38740 4.48763 4.55279 4.73004 4.75155 4.80854 4.86803 4.96103 4.97272 4.99275 5.06934 5.15482 5.31987 5.41380 5.51401 5.55854 5.65871 5.73173 6.13164 6.26937 6.57641 6.76070 7.31595 8.88174 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031222 B = 0.003104 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.597419 B = 9017.937158 C = 9292.302383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 H 0.098 0.902 4 C 0.066 3.934 5 N -0.687 5.687 6 C 0.087 3.913 7 C -0.004 4.004 8 C -0.536 4.536 9 H 0.029 0.971 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.956 3.044 13 H -0.266 1.266 14 H -0.286 1.286 15 H -0.244 1.244 16 C -0.015 4.015 17 C -0.156 4.156 18 C 0.122 3.878 19 F -0.136 7.136 20 C -0.197 4.197 21 C 0.120 3.880 22 F -0.138 7.138 23 C -0.159 4.159 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.345 0.655 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 2.033 26.737 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.117 0.883 4 C -0.063 4.063 5 N -0.318 5.318 6 C -0.042 4.042 7 C -0.042 4.042 8 C -0.574 4.574 9 H 0.048 0.952 10 C -0.194 4.194 11 N -0.594 5.594 12 Si 0.779 3.221 13 H -0.191 1.191 14 H -0.212 1.212 15 H -0.167 1.167 16 C -0.016 4.016 17 C -0.175 4.175 18 C 0.103 3.897 19 F -0.115 7.115 20 C -0.217 4.217 21 C 0.101 3.899 22 F -0.117 7.117 23 C -0.178 4.178 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.313 1.723 26.575 26.731 hybrid contribution 1.015 0.117 -0.391 1.094 sum -1.298 1.839 26.184 26.280 Atomic orbital electron populations 1.21734 0.92628 1.02336 1.02429 1.20146 0.97475 0.99433 0.89015 0.88340 1.22024 0.97500 0.97832 0.88958 1.60474 1.64158 1.06086 1.01069 1.21608 0.95931 0.97687 0.89008 1.19432 0.96910 0.95599 0.92212 1.21455 1.35167 1.09032 0.91753 0.95227 1.26053 0.96575 1.01666 0.95108 1.70080 1.48543 1.42109 0.98665 0.85566 0.79470 0.78833 0.78189 1.19065 1.21213 1.16723 1.19529 0.94098 0.92567 0.95381 1.21337 1.00154 1.02571 0.93417 1.17325 0.93482 0.90176 0.88747 1.91527 1.72564 1.80605 1.66759 1.21148 1.03250 0.94493 1.02790 1.17357 0.98092 0.78917 0.95523 1.91523 1.90926 1.34387 1.94827 1.21247 1.03337 0.95620 0.97598 0.91883 0.91475 0.92772 0.95430 0.91217 0.83733 0.96708 0.92764 0.95676 0.96143 0.92480 0.82258 0.82262 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.90 71.98 0.64 -1.67 16 2 C -0.04 -0.72 2.70 -11.54 -0.03 -0.75 16 3 H 0.10 1.44 7.87 -2.39 -0.02 1.42 16 4 C 0.07 1.51 4.81 86.30 0.42 1.93 16 5 N -0.69 -19.66 5.96 -513.89 -3.06 -22.72 16 6 C 0.09 3.30 5.62 86.30 0.49 3.79 16 7 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 8 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 9 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 10 C 0.00 0.15 5.47 84.65 0.46 0.61 16 11 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 12 Si 0.96 44.01 27.47 68.60 1.88 45.89 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 15 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 16 C -0.01 -0.25 4.78 -19.88 -0.10 -0.34 16 17 C -0.16 -2.41 9.65 22.32 0.22 -2.19 16 18 C 0.12 2.06 7.30 22.37 0.16 2.22 16 19 F -0.14 -2.44 17.27 44.97 0.78 -1.67 16 20 C -0.20 -3.25 10.01 22.36 0.22 -3.03 16 21 C 0.12 2.20 7.30 22.37 0.16 2.36 16 22 F -0.14 -2.76 17.27 44.97 0.78 -1.99 16 23 C -0.16 -2.80 8.74 22.32 0.20 -2.60 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.34 7.75 -2.39 -0.02 1.33 16 26 H 0.05 0.94 7.40 -2.39 -0.02 0.92 16 27 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 1.65 7.55 -2.39 -0.02 1.64 16 29 H 0.34 8.89 8.73 -89.70 -0.78 8.11 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 33 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.16 1.87 7.94 -2.91 -0.02 1.85 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.15 2.45 7.16 -2.91 -0.02 2.43 16 Total: -1.00 -65.05 318.02 4.12 -60.93 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.23 Total: 9.73 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.21 Total: -30.39 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.76 Total: -82.50 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.55 Total: -3.65 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -65.05 4.12 -60.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295554998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.404 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds