Wall clock time and date at job start Mon Mar 30 2020 01:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47386 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47122 * 119.99571 * 9 7 5 12 12 H 1.48497 * 109.47069 * 239.99599 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 2 17 17 C 1.38232 * 119.98950 * 259.73155 * 16 15 13 18 18 C 1.38188 * 120.05224 * 179.72491 * 17 16 15 19 19 C 1.38491 * 120.02221 * 0.54332 * 18 17 16 20 20 F 1.35103 * 120.01523 * 179.74825 * 19 18 17 21 21 C 1.38399 * 119.97758 * 359.72886 * 19 18 17 22 22 C 1.38435 * 119.95092 * 359.97438 * 21 19 18 23 23 F 1.35099 * 120.01666 * 179.97438 * 22 21 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.07999 * 119.97169 * 359.96987 * 17 16 15 36 36 H 1.08001 * 119.98749 * 180.24604 * 18 17 16 37 37 H 1.08004 * 120.02799 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.5839 -0.2928 1.2649 11 1 6.4872 -0.3669 3.6872 12 1 6.6856 -2.4235 2.4178 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4773 -0.5163 -3.5794 17 6 3.6726 0.0257 -4.0133 18 6 4.3409 -0.5393 -5.0828 19 6 3.8079 -1.6425 -5.7284 20 9 4.4588 -2.1917 -6.7772 21 6 2.6083 -2.1826 -5.2984 22 6 1.9428 -1.6196 -4.2230 23 9 0.7715 -2.1454 -3.8026 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 4.0865 0.8889 -3.5135 36 1 5.2767 -0.1174 -5.4184 37 1 2.1921 -3.0433 -5.8010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297919636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:36 Heat of formation + Delta-G solvation = -60.207576 kcal Electronic energy + Delta-G solvation = -20791.695203 eV Core-core repulsion = 17398.148638 eV Total energy + Delta-G solvation = -3393.546565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07703 -49.05587 -39.18883 -37.52482 -33.19365 -31.88675 -30.88041 -29.59883 -27.39424 -26.67433 -24.35833 -23.16656 -22.84376 -21.16651 -18.77246 -18.23951 -17.22919 -16.47772 -16.17417 -15.96181 -15.61844 -15.51694 -14.86648 -14.55939 -14.39767 -14.05681 -13.92685 -13.37885 -12.93754 -12.71067 -12.26324 -12.04677 -11.77363 -11.74129 -11.53999 -11.29966 -11.24027 -10.92376 -10.63749 -10.60630 -10.39686 -9.97535 -9.23801 -9.09459 -8.98129 -8.63661 -8.25789 -7.51236 -5.88661 -3.86331 0.91757 0.98298 3.31058 3.38016 3.45624 3.50293 3.82927 4.38949 4.52995 4.55815 4.59158 4.75658 4.85166 5.09199 5.47718 5.51875 5.65188 5.72340 5.73940 5.82743 5.90505 5.95073 5.98399 6.02296 6.03599 6.14272 6.32529 6.45445 6.65605 6.70867 6.74125 6.96363 7.50471 7.63170 7.87104 7.99114 8.12290 8.57869 9.19578 9.75319 11.23424 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005709 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.842551 B = 4903.348387 C = 5879.760880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.507 5.507 14 C 0.020 3.980 15 C 0.088 3.912 16 C -0.105 4.105 17 C -0.045 4.045 18 C -0.163 4.163 19 C 0.119 3.881 20 F -0.137 7.137 21 C -0.194 4.194 22 C 0.133 3.867 23 F -0.128 7.128 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 2.892 -16.847 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.230 5.230 14 C -0.128 4.128 15 C -0.040 4.040 16 C -0.106 4.106 17 C -0.063 4.063 18 C -0.182 4.182 19 C 0.099 3.901 20 F -0.115 7.115 21 C -0.214 4.214 22 C 0.113 3.887 23 F -0.106 7.106 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.848 2.709 -16.652 17.109 hybrid contribution 0.095 -0.293 -0.065 0.315 sum -2.753 2.416 -16.717 17.113 Atomic orbital electron populations 1.22531 0.99648 1.01531 1.00655 1.21969 0.90158 0.98333 0.91662 0.91150 1.19212 0.96416 0.95469 0.89675 1.21197 0.91762 1.32891 1.06892 0.92110 1.25008 0.97996 0.95897 0.96032 1.69972 1.35115 1.36997 1.12383 0.86587 0.86487 0.77568 0.77631 1.19782 1.21406 1.21365 1.62235 1.58432 1.02109 1.00244 1.22636 0.96016 0.91347 1.02796 1.21029 0.96759 0.97687 0.88494 1.20061 0.96960 0.95702 0.97890 1.20834 0.92282 0.99293 0.93928 1.21192 1.02074 0.96719 0.98167 1.17267 0.91569 0.94270 0.86972 1.91509 1.80456 1.84907 1.54645 1.20942 0.96634 1.03922 0.99860 1.17138 0.83297 0.93812 0.94426 1.91525 1.44709 1.85432 1.88945 0.92444 0.94229 0.92670 0.96254 0.96173 0.93382 0.92616 0.95988 0.90263 0.94109 0.89633 0.83684 0.84162 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.44 37.16 0.31 -2.81 16 2 C 0.09 1.71 2.26 -67.71 -0.15 1.56 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.97 16 4 C 0.03 0.73 4.37 -27.88 -0.12 0.61 16 5 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.51 -9.47 4.42 -236.33 -1.04 -10.52 16 14 C 0.02 0.37 7.22 60.07 0.43 0.80 16 15 C 0.09 1.32 4.57 -4.97 -0.02 1.29 16 16 C -0.10 -1.45 5.16 -104.54 -0.54 -1.99 16 17 C -0.04 -0.54 9.66 -39.60 -0.38 -0.92 16 18 C -0.16 -1.82 10.03 -39.51 -0.40 -2.21 16 19 C 0.12 1.43 7.30 -39.43 -0.29 1.14 16 20 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 21 C -0.19 -2.37 10.01 -39.45 -0.39 -2.76 16 22 C 0.13 1.82 5.88 -39.43 -0.23 1.59 16 23 F -0.13 -1.84 13.80 2.25 0.03 -1.81 16 24 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.04 0.59 6.91 -51.93 -0.36 0.23 16 26 H 0.05 0.95 6.42 -51.93 -0.33 0.61 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.02 0.54 6.26 -51.93 -0.33 0.21 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.06 0.97 5.06 -51.93 -0.26 0.71 16 31 H 0.02 0.37 6.13 -51.93 -0.32 0.05 16 32 H 0.08 1.65 6.21 -51.93 -0.32 1.33 16 33 H 0.04 0.59 6.86 -51.93 -0.36 0.24 16 34 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 35 H 0.15 1.51 8.03 -52.49 -0.42 1.09 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -30.04 304.89 -7.60 -37.63 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -4.75 Total: -2.58 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.18 Total: -16.21 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.31 Total: -36.98 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.07 Total: -3.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.04 -7.60 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297919636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.573 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds