Wall clock time and date at job start Mon Mar 30 2020 01:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47386 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47122 * 119.99571 * 9 7 5 12 12 H 1.48497 * 109.47069 * 239.99599 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 2 17 17 C 1.38232 * 119.98950 * 259.73155 * 16 15 13 18 18 C 1.38188 * 120.05224 * 179.72491 * 17 16 15 19 19 C 1.38491 * 120.02221 * 0.54332 * 18 17 16 20 20 F 1.35103 * 120.01523 * 179.74825 * 19 18 17 21 21 C 1.38399 * 119.97758 * 359.72886 * 19 18 17 22 22 C 1.38435 * 119.95092 * 359.97438 * 21 19 18 23 23 F 1.35099 * 120.01666 * 179.97438 * 22 21 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.07999 * 119.97169 * 359.96987 * 17 16 15 36 36 H 1.08001 * 119.98749 * 180.24604 * 18 17 16 37 37 H 1.08004 * 120.02799 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.5839 -0.2928 1.2649 11 1 6.4872 -0.3669 3.6872 12 1 6.6856 -2.4235 2.4178 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4773 -0.5163 -3.5794 17 6 3.6726 0.0257 -4.0133 18 6 4.3409 -0.5393 -5.0828 19 6 3.8079 -1.6425 -5.7284 20 9 4.4588 -2.1917 -6.7772 21 6 2.6083 -2.1826 -5.2984 22 6 1.9428 -1.6196 -4.2230 23 9 0.7715 -2.1454 -3.8026 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 4.0865 0.8889 -3.5135 36 1 5.2767 -0.1174 -5.4184 37 1 2.1921 -3.0433 -5.8010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297919636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:35 Heat of formation + Delta-G solvation = -77.182640 kcal Electronic energy + Delta-G solvation = -20792.431297 eV Core-core repulsion = 17398.148638 eV Total energy + Delta-G solvation = -3394.282659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.12354 -49.99389 -40.27372 -38.88105 -35.07725 -33.39609 -31.86864 -30.96347 -29.20957 -27.99543 -25.79161 -24.66209 -24.09377 -22.33097 -20.35225 -19.21047 -18.35090 -18.22281 -17.63501 -17.00260 -16.66929 -16.63945 -16.32951 -16.12670 -15.56291 -15.39760 -14.98918 -14.65481 -14.46525 -14.01154 -13.82209 -13.54497 -13.27953 -12.98214 -12.85291 -12.70492 -12.59714 -12.47503 -12.32028 -12.17108 -12.09683 -11.74890 -11.05636 -11.04666 -10.46251 -10.03936 -9.65967 -8.92915 -8.07532 -6.11888 -0.05643 0.05270 1.42782 1.44253 1.56648 2.34302 2.49478 2.87603 3.21521 3.33931 3.43500 3.61488 3.70752 3.91492 4.14151 4.22459 4.34497 4.44246 4.49508 4.60539 4.69542 4.73474 4.81711 4.88813 4.97105 4.99251 5.08369 5.13647 5.23197 5.27089 5.34956 5.51701 5.72153 5.79255 5.92387 6.30003 6.36969 6.51573 7.02749 7.53923 9.04921 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005709 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.842551 B = 4903.348387 C = 5879.760880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.075 0.925 4 C 0.034 3.966 5 C -0.494 4.494 6 H 0.063 0.937 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.288 1.288 13 N -0.526 5.526 14 C 0.032 3.968 15 C 0.092 3.908 16 C -0.120 4.120 17 C -0.046 4.046 18 C -0.155 4.155 19 C 0.114 3.886 20 F -0.137 7.137 21 C -0.195 4.195 22 C 0.117 3.883 23 F -0.136 7.136 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.047 0.953 27 H -0.007 1.007 28 H -0.006 1.006 29 H 0.257 0.743 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 4.023 -18.651 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.093 0.907 4 C -0.003 4.003 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.214 1.214 13 N -0.249 5.249 14 C -0.117 4.117 15 C -0.035 4.035 16 C -0.122 4.122 17 C -0.064 4.064 18 C -0.174 4.174 19 C 0.094 3.906 20 F -0.116 7.116 21 C -0.214 4.214 22 C 0.097 3.903 23 F -0.115 7.115 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.845 3.852 -18.478 18.965 hybrid contribution -0.218 -0.656 0.437 0.818 sum -2.064 3.197 -18.041 18.438 Atomic orbital electron populations 1.22403 0.97373 1.01535 1.02111 1.21673 0.91954 0.97561 0.90104 0.90661 1.19079 0.95396 0.94319 0.91550 1.21542 0.93142 1.32072 1.06522 0.91926 1.25870 1.02832 0.95776 0.95860 1.70108 1.36996 1.38248 1.13167 0.85537 0.80755 0.77492 0.78082 1.18400 1.20893 1.21435 1.62101 1.59057 1.02456 1.01336 1.22472 0.96785 0.91248 1.01152 1.21050 0.97540 0.97857 0.87084 1.20087 0.97874 0.96294 0.97924 1.21069 0.91577 0.99690 0.94070 1.21474 1.02662 0.95937 0.97277 1.17409 0.91551 0.94572 0.87032 1.91512 1.80406 1.84968 1.54670 1.21090 0.96673 1.04217 0.99444 1.17302 0.83416 0.94306 0.95228 1.91495 1.45227 1.85628 1.89138 0.92239 0.91467 0.93395 0.98868 0.98815 0.93415 0.91879 0.94858 0.93784 0.93453 0.88099 0.81954 0.81597 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 8.44 71.98 0.61 -5.14 16 2 C 0.09 3.72 2.26 44.92 0.10 3.82 16 3 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 4 C 0.03 1.74 4.37 29.85 0.13 1.87 16 5 C -0.49 -27.59 8.84 25.60 0.23 -27.36 16 6 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 7 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 8 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 N -0.53 -19.17 4.42 -901.60 -3.98 -23.16 16 14 C 0.03 1.16 7.22 127.69 0.92 2.08 16 15 C 0.09 2.55 4.57 85.55 0.39 2.94 16 16 C -0.12 -3.08 5.16 -19.81 -0.10 -3.18 16 17 C -0.05 -0.97 9.66 22.26 0.22 -0.76 16 18 C -0.15 -2.99 10.03 22.32 0.22 -2.77 16 19 C 0.11 2.47 7.30 22.37 0.16 2.63 16 20 F -0.14 -3.00 17.27 44.97 0.78 -2.23 16 21 C -0.19 -4.41 10.01 22.36 0.22 -4.19 16 22 C 0.12 3.03 5.88 22.37 0.13 3.16 16 23 F -0.14 -3.78 13.80 44.97 0.62 -3.16 16 24 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.07 1.83 6.91 -2.39 -0.02 1.82 16 26 H 0.05 1.62 6.42 -2.39 -0.02 1.61 16 27 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 28 H -0.01 -0.36 6.26 -2.39 -0.01 -0.38 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.06 2.19 5.06 -2.39 -0.01 2.18 16 31 H 0.03 1.12 6.13 -2.39 -0.01 1.11 16 32 H 0.04 1.90 6.21 -2.38 -0.01 1.88 16 33 H 0.05 1.26 6.86 -2.39 -0.02 1.24 16 34 H 0.10 2.46 7.79 -2.39 -0.02 2.44 16 35 H 0.16 2.84 8.03 -2.91 -0.02 2.81 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -64.67 304.89 4.50 -60.17 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.08 Total: 5.83 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.70 Total: -26.88 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.70 Total: -80.86 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.40 Total: -5.39 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.67 4.50 -60.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297919636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.009 kcal (2) G-P(sol) polarization free energy of solvation -64.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds