Wall clock time and date at job start Mon Mar 30 2020 01:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99789 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46825 * 90.00623 * 9 7 5 11 11 H 1.48498 * 109.46945 * 210.00104 * 9 7 5 12 12 H 1.48492 * 109.47198 * 330.00631 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 2 17 17 C 1.38423 * 120.02693 * 269.72999 * 16 15 13 18 18 F 1.35102 * 120.00971 * 359.97130 * 17 16 15 19 19 C 1.38474 * 119.97584 * 179.70120 * 17 16 15 20 20 C 1.38212 * 120.02377 * 0.59062 * 19 17 16 21 21 C 1.38207 * 120.04737 * 359.67886 * 20 19 17 22 22 C 1.38418 * 120.02533 * 89.99825 * 16 15 13 23 23 F 1.35101 * 120.01272 * 359.97438 * 22 16 15 24 24 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 25 25 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.96995 * 119.99558 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.07997 * 119.99025 * 180.32125 * 19 17 16 36 36 H 1.07997 * 119.97450 * 179.70703 * 20 19 17 37 37 H 1.08005 * 119.98508 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 5.5412 -1.1003 2.4133 9 14 3.3016 -2.1089 3.6952 10 1 3.1701 -3.5388 3.3167 11 1 4.0455 -2.0023 4.9760 12 1 1.9509 -1.5132 3.8561 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4773 -0.5163 -3.5794 17 6 3.7650 -0.1118 -3.8863 18 9 4.3729 0.8337 -3.1368 19 6 4.4320 -0.6807 -4.9582 20 6 3.8079 -1.6432 -5.7290 21 6 2.5201 -2.0438 -5.4270 22 6 1.8534 -1.4807 -4.3519 23 9 0.5948 -1.8730 -4.0565 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 6.0256 -1.5078 3.1483 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 5.4386 -0.3690 -5.1946 36 1 4.3271 -2.0830 -6.5677 37 1 2.0332 -2.7958 -6.0303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297988797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:40 Heat of formation + Delta-G solvation = -58.030049 kcal Electronic energy + Delta-G solvation = -21139.735496 eV Core-core repulsion = 17746.283356 eV Total energy + Delta-G solvation = -3393.452140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.99788 -48.70581 -39.04447 -37.67784 -33.28288 -32.00549 -30.26780 -29.98626 -27.85235 -26.88847 -24.51451 -22.76654 -22.60328 -21.10325 -18.80575 -18.04436 -17.20945 -16.56506 -16.30799 -15.99198 -15.47476 -15.17301 -15.08400 -14.53614 -14.27452 -14.06242 -13.83117 -13.16149 -12.80406 -12.68930 -12.36006 -12.15100 -12.03410 -11.91508 -11.68674 -11.49047 -11.24840 -11.00836 -10.85434 -10.68421 -10.05789 -9.74710 -9.52990 -9.04148 -8.83593 -8.69829 -8.39160 -7.55218 -5.87480 -3.81456 0.98231 1.02742 3.35214 3.37392 3.44929 3.47243 3.97597 4.46583 4.50091 4.56733 4.63221 4.73721 4.86054 5.14135 5.44947 5.51339 5.58524 5.63696 5.77348 5.84134 5.89566 5.94323 5.96574 5.99843 6.03056 6.12627 6.16450 6.37260 6.51469 6.57816 6.78067 6.80401 7.14060 7.32563 7.72864 7.79819 7.96970 8.75605 9.26159 9.75235 11.26591 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.006046 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.691771 B = 4629.890100 C = 5201.441160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.077 0.923 4 C -0.006 4.006 5 C -0.490 4.490 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.504 5.504 14 C 0.024 3.976 15 C 0.091 3.909 16 C -0.140 4.140 17 C 0.155 3.845 18 F -0.119 7.119 19 C -0.168 4.168 20 C -0.068 4.068 21 C -0.171 4.171 22 C 0.130 3.870 23 F -0.132 7.132 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -0.203 -16.600 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.095 0.905 4 C -0.044 4.044 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.227 5.227 14 C -0.124 4.124 15 C -0.037 4.037 16 C -0.142 4.142 17 C 0.135 3.865 18 F -0.097 7.097 19 C -0.187 4.187 20 C -0.086 4.086 21 C -0.190 4.190 22 C 0.110 3.890 23 F -0.110 7.110 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.046 -0.272 -16.373 17.827 hybrid contribution -1.316 -0.493 0.904 1.671 sum -8.362 -0.765 -15.469 17.602 Atomic orbital electron populations 1.22568 0.99532 1.01540 1.01006 1.21739 0.89992 0.98579 0.90876 0.90502 1.19693 0.98072 0.95052 0.91542 1.21066 0.89364 1.33848 1.08579 0.90251 1.25011 0.94660 0.96338 0.97776 1.69917 1.06391 1.46159 1.32295 0.86914 0.80429 0.80621 0.82057 1.20623 1.21618 1.19309 1.62145 1.58387 1.01956 1.00205 1.22448 0.95950 0.91433 1.02540 1.20902 0.96741 0.97874 0.88181 1.19909 0.95146 0.99831 0.99349 1.17200 0.90066 0.88929 0.90355 1.91581 1.82281 1.61023 1.74837 1.21220 1.01593 0.99685 0.96197 1.20763 0.93595 0.95422 0.98806 1.21104 0.96368 1.03154 0.98396 1.17216 0.80382 0.95769 0.95590 1.91506 1.37211 1.89427 1.92873 0.93816 0.92679 0.92365 0.96288 0.96880 0.93113 0.92864 0.96008 0.90423 0.93810 0.89470 0.84129 0.84260 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 8.44 37.16 0.31 -2.79 16 2 C 0.10 1.93 2.26 -67.71 -0.15 1.78 16 3 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 4 C -0.01 -0.15 3.44 -27.88 -0.10 -0.25 16 5 C -0.49 -14.16 9.39 -34.44 -0.32 -14.48 16 6 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -28.72 13.96 55.43 0.77 -27.95 16 9 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.17 16 13 N -0.50 -9.89 4.42 -236.33 -1.04 -10.94 16 14 C 0.02 0.44 7.54 60.07 0.45 0.90 16 15 C 0.09 1.50 4.36 -4.97 -0.02 1.48 16 16 C -0.14 -2.16 4.89 -104.49 -0.51 -2.67 16 17 C 0.15 2.35 7.24 -39.43 -0.29 2.07 16 18 F -0.12 -2.09 16.47 2.25 0.04 -2.05 16 19 C -0.17 -2.00 10.03 -39.50 -0.40 -2.39 16 20 C -0.07 -0.67 10.04 -39.60 -0.40 -1.06 16 21 C -0.17 -1.86 10.02 -39.51 -0.40 -2.26 16 22 C 0.13 1.78 5.93 -39.43 -0.23 1.54 16 23 F -0.13 -1.85 15.09 2.25 0.03 -1.82 16 24 H 0.04 0.65 6.91 -51.93 -0.36 0.29 16 25 H 0.05 0.90 6.42 -51.93 -0.33 0.56 16 26 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.02 0.46 7.20 -51.92 -0.37 0.08 16 28 H 0.01 0.32 5.69 -51.93 -0.30 0.02 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.05 0.93 5.90 -51.93 -0.31 0.63 16 31 H 0.02 0.36 6.41 -51.93 -0.33 0.03 16 32 H 0.08 1.54 6.21 -51.93 -0.32 1.22 16 33 H 0.04 0.67 6.56 -51.93 -0.34 0.33 16 34 H 0.09 1.44 7.42 -51.93 -0.39 1.06 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -32.10 302.47 -7.19 -39.29 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.74 Total: -2.23 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.15 Total: -16.39 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.27 Total: -38.89 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.07 Total: -3.87 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.10 -7.19 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297988797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.737 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds