Wall clock time and date at job start Mon Mar 30 2020 01:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00002 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99789 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46825 * 90.00623 * 9 7 5 11 11 H 1.48498 * 109.46945 * 210.00104 * 9 7 5 12 12 H 1.48492 * 109.47198 * 330.00631 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 2 17 17 C 1.38423 * 120.02693 * 269.72999 * 16 15 13 18 18 F 1.35102 * 120.00971 * 359.97130 * 17 16 15 19 19 C 1.38474 * 119.97584 * 179.70120 * 17 16 15 20 20 C 1.38212 * 120.02377 * 0.59062 * 19 17 16 21 21 C 1.38207 * 120.04737 * 359.67886 * 20 19 17 22 22 C 1.38418 * 120.02533 * 89.99825 * 16 15 13 23 23 F 1.35101 * 120.01272 * 359.97438 * 22 16 15 24 24 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 25 25 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.96995 * 119.99558 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.07997 * 119.99025 * 180.32125 * 19 17 16 36 36 H 1.07997 * 119.97450 * 179.70703 * 20 19 17 37 37 H 1.08005 * 119.98508 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 5.5412 -1.1003 2.4133 9 14 3.3016 -2.1089 3.6952 10 1 3.1701 -3.5388 3.3167 11 1 4.0455 -2.0023 4.9760 12 1 1.9509 -1.5132 3.8561 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4773 -0.5163 -3.5794 17 6 3.7650 -0.1118 -3.8863 18 9 4.3729 0.8337 -3.1368 19 6 4.4320 -0.6807 -4.9582 20 6 3.8079 -1.6432 -5.7290 21 6 2.5201 -2.0438 -5.4270 22 6 1.8534 -1.4807 -4.3519 23 9 0.5948 -1.8730 -4.0565 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 6.0256 -1.5078 3.1483 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 5.4386 -0.3690 -5.1946 36 1 4.3271 -2.0830 -6.5677 37 1 2.0332 -2.7958 -6.0303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297988797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:39 Heat of formation + Delta-G solvation = -78.310165 kcal Electronic energy + Delta-G solvation = -21140.614908 eV Core-core repulsion = 17746.283356 eV Total energy + Delta-G solvation = -3394.331552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.03084 -49.93505 -40.18768 -39.01697 -35.11698 -33.70823 -31.48091 -31.21041 -29.62506 -28.21352 -25.91455 -24.40295 -23.77114 -22.38337 -20.43377 -19.09022 -18.79226 -18.29299 -17.61244 -17.04952 -16.55333 -16.51935 -16.33023 -16.24270 -15.54000 -15.41058 -15.25552 -14.68901 -14.41428 -13.93337 -13.83817 -13.68636 -13.61063 -13.02437 -12.99246 -12.87332 -12.65987 -12.44398 -12.31289 -12.22328 -11.80042 -11.70512 -11.39679 -11.17912 -10.67730 -9.90196 -9.69824 -8.98735 -8.17759 -6.17150 0.00724 0.03607 1.35856 1.37705 1.48842 2.38283 2.41207 2.96592 3.10177 3.24702 3.47469 3.55247 3.70320 3.93668 4.09408 4.24618 4.26466 4.35440 4.39682 4.54265 4.58055 4.66245 4.85801 4.87487 4.95343 5.02121 5.06194 5.09900 5.11680 5.17458 5.22912 5.23276 5.50858 5.73920 5.83469 6.26492 6.28813 6.50206 6.90930 7.43077 9.00011 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.006046 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.691771 B = 4629.890100 C = 5201.441160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.059 0.941 4 C -0.002 4.002 5 C -0.491 4.491 6 H 0.030 0.970 7 C -0.004 4.004 8 N -0.958 5.958 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.534 5.534 14 C 0.033 3.967 15 C 0.098 3.902 16 C -0.164 4.164 17 C 0.116 3.884 18 F -0.146 7.146 19 C -0.166 4.166 20 C -0.051 4.051 21 C -0.158 4.158 22 C 0.117 3.883 23 F -0.136 7.136 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 -1.859 -17.999 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 H 0.078 0.922 4 C -0.040 4.040 5 C -0.530 4.530 6 H 0.049 0.951 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.169 1.169 13 N -0.258 5.258 14 C -0.115 4.115 15 C -0.030 4.030 16 C -0.166 4.166 17 C 0.096 3.904 18 F -0.124 7.124 19 C -0.184 4.184 20 C -0.069 4.069 21 C -0.177 4.177 22 C 0.097 3.903 23 F -0.115 7.115 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.975 -1.919 -17.791 20.019 hybrid contribution -0.632 0.046 1.184 1.343 sum -9.607 -1.873 -16.608 19.277 Atomic orbital electron populations 1.22411 0.96107 1.02384 1.02485 1.21545 0.92637 0.97056 0.89837 0.92225 1.19625 0.94620 0.95908 0.93836 1.21278 0.92008 1.32629 1.07065 0.95115 1.25971 0.95526 0.97589 1.00742 1.70097 1.08509 1.47909 1.33573 0.85735 0.79759 0.79295 0.78257 1.19699 1.21364 1.16941 1.62014 1.59700 1.02929 1.01137 1.22342 0.97066 0.90513 1.01556 1.20795 0.97631 0.96950 0.87608 1.19896 0.95607 1.01365 0.99709 1.17683 0.90802 0.89933 0.91940 1.91507 1.82768 1.62296 1.75871 1.21570 1.02355 0.99483 0.95038 1.21303 0.93090 0.93632 0.98859 1.21556 0.96467 1.02607 0.97070 1.17413 0.80460 0.95917 0.96466 1.91488 1.37485 1.89427 1.93060 0.91968 0.92031 0.91315 0.95766 0.96291 0.93042 0.92500 0.94049 0.92491 0.92500 0.90817 0.82285 0.79725 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.45 8.44 71.98 0.61 -4.85 16 2 C 0.10 3.95 2.26 44.92 0.10 4.05 16 3 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 4 C 0.00 -0.12 3.44 29.85 0.10 -0.01 16 5 C -0.49 -29.41 9.39 25.60 0.24 -29.17 16 6 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 7 C 0.00 -0.22 5.47 84.66 0.46 0.25 16 8 N -0.96 -62.83 13.96 21.45 0.30 -62.53 16 9 Si 0.95 45.95 27.47 68.60 1.88 47.83 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 N -0.53 -21.35 4.42 -901.60 -3.98 -25.34 16 14 C 0.03 1.19 7.54 127.69 0.96 2.15 16 15 C 0.10 3.30 4.36 85.55 0.37 3.67 16 16 C -0.16 -5.06 4.89 -19.78 -0.10 -5.16 16 17 C 0.12 3.62 7.24 22.37 0.16 3.78 16 18 F -0.15 -5.50 16.47 44.97 0.74 -4.76 16 19 C -0.17 -3.69 10.03 22.32 0.22 -3.47 16 20 C -0.05 -0.81 10.04 22.26 0.22 -0.59 16 21 C -0.16 -2.88 10.02 22.32 0.22 -2.66 16 22 C 0.12 3.00 5.93 22.37 0.13 3.14 16 23 F -0.14 -3.56 15.09 44.97 0.68 -2.88 16 24 H 0.06 1.71 6.91 -2.39 -0.02 1.69 16 25 H 0.06 1.84 6.42 -2.39 -0.02 1.83 16 26 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.02 1.14 7.20 -2.38 -0.02 1.12 16 28 H 0.02 0.89 5.69 -2.39 -0.01 0.88 16 29 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.06 1.96 5.90 -2.39 -0.01 1.95 16 31 H 0.04 1.30 6.41 -2.39 -0.02 1.28 16 32 H 0.06 2.24 6.21 -2.38 -0.01 2.23 16 33 H 0.06 1.72 6.56 -2.39 -0.02 1.71 16 34 H 0.07 2.60 7.42 -2.39 -0.02 2.58 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -73.21 302.47 4.36 -68.84 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.02 Total: 7.69 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.72 Total: -28.86 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.68 Total: -87.86 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.42 Total: -7.64 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -73.21 4.36 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297988797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.465 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds