Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46832 * 180.02562 * 12 11 10 14 14 S 1.81011 * 109.46950 * 180.02562 * 13 12 11 15 15 C 1.76200 * 99.99979 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.38798 * 119.99895 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99757 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00011 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47098 * 90.00000 * 19 17 15 21 21 H 1.48504 * 109.46696 * 209.99962 * 19 17 15 22 22 H 1.48496 * 109.47129 * 329.99671 * 19 17 15 23 23 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 24 24 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 25 25 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 27 27 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 28 28 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 29 29 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 30 30 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 31 31 H 1.00904 * 111.00101 * 38.95899 * 10 2 1 32 32 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 33 33 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 34 34 H 1.08995 * 109.47454 * 300.00101 * 12 11 10 35 35 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 36 36 H 1.09000 * 109.47381 * 299.99526 * 13 12 11 37 37 H 1.08995 * 109.47414 * 60.00188 * 13 12 11 38 38 H 0.97002 * 120.00368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 6 2.6597 0.4198 4.7697 14 16 3.2668 -0.4742 6.2219 15 6 3.2423 0.8242 7.4128 16 1 2.9136 1.8126 7.1274 17 6 3.6445 0.5764 8.7179 18 7 3.6257 1.5462 9.6077 19 14 4.2124 -1.1333 9.2117 20 1 5.6779 -1.2480 9.0015 21 1 3.8981 -1.3646 10.6445 22 1 3.5124 -2.1463 8.3816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 4.1058 -2.6958 -1.4554 29 1 6.5342 -1.7002 -1.5146 30 1 6.3374 0.9550 -1.3524 31 1 1.4495 -1.4979 1.4100 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5526 34 1 1.9183 -1.3565 3.8030 35 1 3.5903 -0.9272 3.3692 36 1 3.3363 1.2434 4.5416 37 1 1.6643 0.8135 4.9749 38 1 3.9071 1.3733 10.5198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309580343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = 61.409780 kcal Electronic energy + Delta-G solvation = -17671.886043 eV Core-core repulsion = 14869.746340 eV Total energy + Delta-G solvation = -2802.139703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07553 -37.84761 -34.42879 -32.42847 -32.16886 -30.11990 -29.61488 -26.54889 -25.76232 -24.72111 -21.87445 -21.31562 -20.99077 -20.23427 -17.45595 -17.39010 -16.01342 -15.62618 -15.14482 -14.98410 -14.74209 -14.25492 -13.95215 -13.69555 -13.52836 -12.99188 -12.84410 -12.79889 -12.55572 -12.31885 -12.13224 -11.73640 -11.51915 -11.37220 -11.05874 -11.03079 -10.59919 -10.51790 -10.12850 -9.76890 -9.38034 -8.99335 -8.65997 -8.54971 -8.44284 -6.92772 -6.27183 -3.99303 1.94404 2.51424 2.89881 3.01438 3.31441 3.46224 3.56191 3.93456 4.30883 4.33002 4.64640 4.77004 4.82392 4.87435 4.90383 5.08547 5.11548 5.12936 5.20786 5.35361 5.42064 5.52922 5.61935 5.62164 5.76649 5.82286 5.84667 6.01138 6.02732 6.21948 6.50115 6.62471 6.67360 6.89011 7.01550 7.26235 7.73826 7.96647 8.45549 9.18762 10.82417 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.003440 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.492863 B = 8136.773952 C = 8691.295391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.093 0.907 4 C 0.146 3.854 5 N -0.354 5.354 6 C 0.062 3.938 7 C -0.280 4.280 8 C 0.041 3.959 9 N -0.295 5.295 10 N -0.681 5.681 11 C 0.068 3.932 12 C -0.097 4.097 13 C -0.081 4.081 14 S -0.215 6.215 15 C -0.502 4.502 16 H 0.087 0.913 17 C 0.092 3.908 18 N -0.883 5.883 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.238 1.238 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.339 0.661 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -6.956 -24.108 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.042 4.042 3 H 0.111 0.889 4 C 0.024 3.976 5 N -0.135 5.135 6 C -0.085 4.085 7 C -0.310 4.310 8 C -0.145 4.145 9 N -0.117 5.117 10 N -0.311 5.311 11 C -0.062 4.062 12 C -0.136 4.136 13 C -0.230 4.230 14 S 0.013 5.987 15 C -0.650 4.650 16 H 0.105 0.895 17 C -0.116 4.116 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.162 1.162 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.195 0.805 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.587 -6.961 -23.852 25.104 hybrid contribution -0.397 0.096 0.628 0.749 sum -3.984 -6.866 -23.224 24.543 Atomic orbital electron populations 1.22460 0.96084 1.02529 1.03079 1.21864 0.92790 0.99365 0.90157 0.88898 1.21746 0.75212 1.02258 0.98415 1.48421 1.06058 1.03852 1.55160 1.22431 0.90277 0.94395 1.01417 1.21436 0.97444 0.94560 1.17544 1.23794 0.94523 0.95924 1.00236 1.77264 1.04319 1.06079 1.24026 1.60493 1.56914 1.09867 1.03834 1.21988 0.99364 0.95354 0.89542 1.21276 1.02458 0.97793 0.92032 1.22997 1.03012 1.00586 0.96413 1.84140 1.87113 1.21555 1.05925 1.22134 1.51165 0.96345 0.95352 0.89464 1.24795 0.94012 0.97565 0.95271 1.69939 1.46073 1.32133 1.03796 0.86662 0.80540 0.85085 0.79014 1.19324 1.20111 1.16210 0.91683 0.91715 0.92078 0.89812 0.88839 0.81526 0.84000 0.80511 0.84311 0.90990 0.95186 0.91847 0.90788 0.91435 0.91631 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.16 37.16 0.34 -0.93 16 2 C 0.07 0.63 2.70 -67.71 -0.18 0.45 16 3 H 0.09 1.06 7.71 -51.92 -0.40 0.66 16 4 C 0.15 1.16 6.14 -4.04 -0.02 1.14 16 5 N -0.35 -3.86 3.60 -61.37 -0.22 -4.08 16 6 C 0.06 0.61 11.45 -17.22 -0.20 0.41 16 7 C -0.28 -2.95 10.80 -40.01 -0.43 -3.38 16 8 C 0.04 0.48 12.03 -17.37 -0.21 0.27 16 9 N -0.29 -3.89 12.34 30.63 0.38 -3.52 16 10 N -0.68 -7.41 6.17 -106.73 -0.66 -8.07 16 11 C 0.07 0.89 5.48 -3.83 -0.02 0.87 16 12 C -0.10 -1.53 5.48 -26.73 -0.15 -1.68 16 13 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 14 S -0.22 -5.36 19.41 -107.50 -2.09 -7.45 16 15 C -0.50 -14.87 10.04 30.94 0.31 -14.56 16 16 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 17 C 0.09 2.72 5.50 -17.43 -0.10 2.63 16 18 N -0.88 -27.13 13.97 55.49 0.78 -26.35 16 19 Si 0.86 21.84 27.74 -169.99 -4.72 17.12 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 23 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 24 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.18 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.34 3.24 8.47 -39.29 -0.33 2.91 16 32 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 37 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -33.55 333.34 -8.10 -41.65 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.15 Total: 1.86 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.45 Total: -16.19 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.27 Total: -42.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.55 -8.10 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309580343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.061 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds