Wall clock time and date at job start Mon Mar 30 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46832 * 180.02562 * 12 11 10 14 14 S 1.81011 * 109.46950 * 180.02562 * 13 12 11 15 15 C 1.76200 * 99.99979 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.38798 * 119.99895 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99757 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00011 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47098 * 90.00000 * 19 17 15 21 21 H 1.48504 * 109.46696 * 209.99962 * 19 17 15 22 22 H 1.48496 * 109.47129 * 329.99671 * 19 17 15 23 23 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 24 24 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 25 25 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 27 27 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 28 28 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 29 29 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 30 30 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 31 31 H 1.00904 * 111.00101 * 38.95899 * 10 2 1 32 32 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 33 33 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 34 34 H 1.08995 * 109.47454 * 300.00101 * 12 11 10 35 35 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 36 36 H 1.09000 * 109.47381 * 299.99526 * 13 12 11 37 37 H 1.08995 * 109.47414 * 60.00188 * 13 12 11 38 38 H 0.97002 * 120.00368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 6 2.6597 0.4198 4.7697 14 16 3.2668 -0.4742 6.2219 15 6 3.2423 0.8242 7.4128 16 1 2.9136 1.8126 7.1274 17 6 3.6445 0.5764 8.7179 18 7 3.6257 1.5462 9.6077 19 14 4.2124 -1.1333 9.2117 20 1 5.6779 -1.2480 9.0015 21 1 3.8981 -1.3646 10.6445 22 1 3.5124 -2.1463 8.3816 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 4.1058 -2.6958 -1.4554 29 1 6.5342 -1.7002 -1.5146 30 1 6.3374 0.9550 -1.3524 31 1 1.4495 -1.4979 1.4100 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5526 34 1 1.9183 -1.3565 3.8030 35 1 3.5903 -0.9272 3.3692 36 1 3.3363 1.2434 4.5416 37 1 1.6643 0.8135 4.9749 38 1 3.9071 1.3733 10.5198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309580343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:24 Heat of formation + Delta-G solvation = 38.750186 kcal Electronic energy + Delta-G solvation = -17672.868636 eV Core-core repulsion = 14869.746340 eV Total energy + Delta-G solvation = -2803.122296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84200 -38.70488 -35.51297 -34.70970 -33.10246 -30.98519 -30.47291 -28.00522 -27.20003 -26.01142 -22.68284 -22.54519 -21.75546 -21.04279 -19.62328 -18.14400 -17.14879 -16.96635 -16.64742 -16.15302 -15.87699 -15.51372 -14.96506 -14.91393 -14.54843 -14.44912 -13.94826 -13.65401 -13.49744 -13.39857 -13.33485 -13.02780 -12.96641 -12.73563 -12.58196 -12.11223 -12.02105 -11.84516 -11.61204 -11.38349 -11.18382 -10.60718 -10.19574 -9.49089 -9.24746 -9.01971 -8.54071 -6.26069 1.10342 1.17501 1.31453 1.46424 1.71180 1.83773 2.09608 2.23495 2.65187 2.83965 3.06901 3.63115 3.92067 4.01541 4.10485 4.18004 4.21386 4.23891 4.31026 4.40420 4.50768 4.55391 4.68003 4.72383 4.78901 4.88653 4.97465 5.05221 5.14263 5.20669 5.24321 5.27948 5.67200 5.87819 5.96303 6.07229 6.32941 6.49568 6.89626 6.93654 8.59341 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.003440 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.492863 B = 8136.773952 C = 8691.295391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.141 3.859 5 N -0.358 5.358 6 C 0.062 3.938 7 C -0.297 4.297 8 C 0.024 3.976 9 N -0.337 5.337 10 N -0.684 5.684 11 C 0.082 3.918 12 C -0.081 4.081 13 C -0.070 4.070 14 S -0.215 6.215 15 C -0.527 4.527 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.923 5.923 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.228 1.228 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.201 0.799 29 H 0.157 0.843 30 H 0.190 0.810 31 H 0.350 0.650 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -9.686 -25.470 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 H 0.082 0.918 4 C 0.020 3.980 5 N -0.140 5.140 6 C -0.085 4.085 7 C -0.327 4.327 8 C -0.161 4.161 9 N -0.160 5.160 10 N -0.315 5.315 11 C -0.049 4.049 12 C -0.120 4.120 13 C -0.219 4.219 14 S 0.013 5.987 15 C -0.674 4.674 16 H 0.066 0.934 17 C -0.167 4.167 18 N -0.561 5.561 19 Si 0.748 3.252 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.151 1.151 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.218 0.782 29 H 0.175 0.825 30 H 0.207 0.793 31 H 0.170 0.830 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.239 -9.682 -25.228 27.352 hybrid contribution -0.238 1.035 0.956 1.429 sum -4.476 -8.647 -24.272 26.152 Atomic orbital electron populations 1.22378 0.94135 1.03757 1.03085 1.21804 0.94206 0.97823 0.89851 0.91792 1.22007 0.73858 1.04049 0.98099 1.48674 1.07063 1.03452 1.54783 1.23024 0.89940 0.95646 0.99940 1.21765 0.98673 0.94247 1.17984 1.24189 0.94661 0.97118 1.00096 1.77196 1.05212 1.07921 1.25693 1.60409 1.57914 1.09880 1.03347 1.21692 0.99035 0.94848 0.89339 1.21134 1.02500 0.97223 0.91157 1.23066 1.02335 1.00832 0.95694 1.83783 1.87708 1.20522 1.06654 1.22357 1.51276 0.96480 0.97298 0.93422 1.25807 0.93809 1.01956 0.95088 1.70040 1.46916 1.34592 1.04536 0.85689 0.80276 0.79772 0.79446 1.18613 1.18501 1.15107 0.92954 0.90473 0.90183 0.88431 0.85888 0.78198 0.82487 0.79304 0.83025 0.92926 0.94466 0.90559 0.91625 0.92425 0.91567 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.16 71.98 0.66 -1.33 16 2 C 0.07 1.21 2.70 44.92 0.12 1.33 16 3 H 0.06 1.45 7.71 -2.38 -0.02 1.43 16 4 C 0.14 1.87 6.14 86.38 0.53 2.40 16 5 N -0.36 -7.22 3.60 -348.07 -1.25 -8.47 16 6 C 0.06 1.08 11.45 83.54 0.96 2.04 16 7 C -0.30 -5.89 10.80 21.99 0.24 -5.65 16 8 C 0.02 0.56 12.03 85.24 1.03 1.58 16 9 N -0.34 -8.85 12.34 -57.02 -0.70 -9.55 16 10 N -0.68 -13.46 6.17 -491.57 -3.04 -16.49 16 11 C 0.08 2.07 5.48 86.30 0.47 2.54 16 12 C -0.08 -2.45 5.48 30.59 0.17 -2.28 16 13 C -0.07 -2.79 5.67 71.98 0.41 -2.38 16 14 S -0.21 -10.58 19.41 -56.49 -1.10 -11.68 16 15 C -0.53 -31.87 10.04 67.95 0.68 -31.19 16 16 H 0.05 3.15 8.03 -2.91 -0.02 3.12 16 17 C 0.04 2.28 5.50 84.86 0.47 2.74 16 18 N -0.92 -57.71 13.97 21.65 0.30 -57.41 16 19 Si 0.93 44.64 27.74 68.60 1.90 46.54 16 20 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.23 -10.51 6.74 99.48 0.67 -9.84 16 23 H 0.05 0.75 7.45 -2.39 -0.02 0.73 16 24 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 0.64 8.13 -2.39 -0.02 0.62 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 28 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 29 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.35 5.58 8.47 -89.69 -0.76 4.82 16 32 H 0.05 1.54 8.05 -2.39 -0.02 1.52 16 33 H 0.04 0.89 7.44 -2.39 -0.02 0.87 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 37 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 38 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -73.94 333.34 2.07 -71.87 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.23 Total: 15.38 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 5.73 Total: -30.18 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.69 Total: -91.93 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -10.58 SS G_CDS: -1.10 Total: -11.68 kcal Total: -73.94 2.07 -71.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309580343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.618 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds