Wall clock time and date at job start Mon Mar 30 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 N 1.46505 * 109.47089 * 184.99747 * 4 2 1 6 6 C 1.34949 * 126.03240 * 125.00122 * 5 4 2 7 7 C 1.35314 * 107.74406 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.92088 * 0.02562 * 7 6 5 9 9 N 1.30843 * 108.19976 * 359.74040 * 8 7 6 10 10 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 11 11 C 1.46905 * 110.99870 * 84.99904 * 10 2 1 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 2 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 S 1.80994 * 109.47261 * 179.97438 * 13 12 11 15 15 C 1.76203 * 99.99877 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.38800 * 120.00082 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99855 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47221 * 59.99794 * 19 17 15 21 21 H 1.48500 * 109.47254 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47310 * 300.00015 * 19 17 15 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 1.08004 * 126.12581 * 0.02562 * 6 5 4 29 29 H 1.07998 * 126.04258 * 179.97438 * 7 6 5 30 30 H 1.08004 * 125.90051 * 179.97438 * 8 7 6 31 31 H 1.00901 * 111.00067 * 208.95080 * 10 2 1 32 32 H 1.09001 * 109.46798 * 300.00327 * 11 10 2 33 33 H 1.08998 * 109.46961 * 60.00043 * 11 10 2 34 34 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 35 35 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 36 36 H 1.09001 * 109.46514 * 300.00105 * 13 12 11 37 37 H 1.08998 * 109.46924 * 59.99625 * 13 12 11 38 38 H 0.97005 * 120.00003 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.6179 1.3109 6 6 4.2186 -0.1322 2.3448 7 6 5.5273 -0.2093 2.0098 8 6 5.6115 -0.7604 0.7270 9 7 4.3970 -1.0105 0.3092 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2227 -2.3469 12 6 2.5950 -0.5330 -3.5745 13 6 2.6610 0.4203 -4.7694 14 16 3.2681 -0.4736 -6.2215 15 6 3.2451 0.8252 -7.4120 16 1 2.9169 1.8137 -7.1264 17 6 3.6477 0.5777 -8.7170 18 7 4.0472 -0.6272 -9.0652 19 14 3.6226 1.9544 -9.9793 20 1 4.5149 3.0535 -9.5309 21 1 4.0951 1.4350 -11.2878 22 1 2.2371 2.4692 -10.1228 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 3.8203 0.2488 3.2736 29 1 6.3598 0.1007 2.6240 30 1 6.5218 -0.9505 0.1779 31 1 2.9173 -1.1204 -1.0288 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 3.5903 -0.9270 -3.3692 35 1 1.9183 -1.3563 -3.8030 36 1 1.6658 0.8146 -4.9749 37 1 3.3379 1.2434 -4.5406 38 1 4.3282 -0.8004 -9.9773 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309580345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:27 Heat of formation + Delta-G solvation = 65.591087 kcal Electronic energy + Delta-G solvation = -17698.216301 eV Core-core repulsion = 14896.257913 eV Total energy + Delta-G solvation = -2801.958388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37112 -37.60545 -34.33632 -32.38899 -32.10803 -30.22336 -29.75170 -26.62867 -25.65205 -24.51168 -21.52951 -21.30922 -20.98481 -20.38476 -17.50430 -17.38050 -16.34967 -15.57595 -15.03848 -14.76048 -14.65624 -14.28742 -14.04268 -13.71918 -13.35632 -13.01684 -12.95242 -12.53326 -12.40484 -12.26852 -11.98952 -11.45027 -11.34770 -11.20949 -11.01171 -10.79623 -10.65497 -10.56246 -10.28531 -9.62411 -9.45833 -9.00105 -8.81277 -8.32484 -8.22890 -6.45854 -6.17278 -3.86901 1.68595 2.27368 2.67550 3.25354 3.26589 3.31042 3.61876 4.03710 4.25026 4.29207 4.55648 4.69370 4.83411 4.92569 5.12023 5.18238 5.29939 5.35898 5.41239 5.45615 5.53411 5.57286 5.65105 5.75040 5.81354 5.86842 6.00327 6.07350 6.21426 6.42000 6.46601 6.71426 6.77360 6.83907 7.13783 7.45377 7.65229 7.74851 8.41687 9.28552 10.90894 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.003262 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.463267 B = 8581.844915 C = 9160.097095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.045 0.955 4 C 0.127 3.873 5 N -0.375 5.375 6 C 0.051 3.949 7 C -0.276 4.276 8 C 0.051 3.949 9 N -0.295 5.295 10 N -0.690 5.690 11 C 0.068 3.932 12 C -0.093 4.093 13 C -0.111 4.111 14 S -0.131 6.131 15 C -0.517 4.517 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.172 0.828 29 H 0.147 0.853 30 H 0.185 0.815 31 H 0.364 0.636 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 1.471 24.892 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.039 4.039 3 H 0.063 0.937 4 C 0.006 3.994 5 N -0.157 5.157 6 C -0.095 4.095 7 C -0.305 4.305 8 C -0.135 4.135 9 N -0.117 5.117 10 N -0.330 5.330 11 C -0.062 4.062 12 C -0.132 4.132 13 C -0.260 4.260 14 S 0.097 5.903 15 C -0.665 4.665 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.189 0.811 29 H 0.164 0.836 30 H 0.202 0.798 31 H 0.190 0.810 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.825 -0.467 23.499 23.813 hybrid contribution 0.937 3.101 0.255 3.249 sum -2.888 2.634 23.755 24.074 Atomic orbital electron populations 1.21768 0.93379 1.02872 1.01789 1.21758 0.96401 0.96114 0.89582 0.93700 1.22112 0.73978 1.03454 0.99894 1.48867 1.06562 1.47939 1.12376 1.22574 0.92563 1.00194 0.94159 1.21525 0.96313 1.13766 0.98913 1.23962 0.95929 0.98248 0.95351 1.76947 0.99661 1.22889 1.12220 1.60765 1.36419 1.32553 1.03213 1.21977 1.00015 0.93668 0.90581 1.21209 1.01743 0.98220 0.92055 1.23219 1.02655 1.01154 0.98989 1.84632 1.85448 1.18694 1.01525 1.22665 1.50977 0.96733 0.96124 0.91094 1.25009 0.94676 0.96400 0.97707 1.70020 1.41419 1.20033 1.19098 0.86232 0.78638 0.81116 0.79583 1.19972 1.20822 1.19967 0.92646 0.91729 0.91492 0.88058 0.88696 0.81095 0.83559 0.79831 0.81006 0.91556 0.95917 0.91768 0.90853 0.92237 0.92480 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.41 37.15 0.35 -0.87 16 2 C 0.07 0.76 2.86 -67.72 -0.19 0.57 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 4 C 0.13 1.06 6.08 -4.04 -0.02 1.04 16 5 N -0.37 -3.91 3.68 -61.36 -0.23 -4.14 16 6 C 0.05 0.43 11.45 -17.22 -0.20 0.24 16 7 C -0.28 -2.50 10.80 -40.01 -0.43 -2.93 16 8 C 0.05 0.56 12.03 -17.36 -0.21 0.35 16 9 N -0.30 -3.82 9.83 30.63 0.30 -3.52 16 10 N -0.69 -9.52 6.31 -106.73 -0.67 -10.19 16 11 C 0.07 1.05 5.48 -3.82 -0.02 1.03 16 12 C -0.09 -1.71 5.48 -26.73 -0.15 -1.86 16 13 C -0.11 -2.40 5.67 37.16 0.21 -2.19 16 14 S -0.13 -3.59 21.44 -107.50 -2.30 -5.90 16 15 C -0.52 -15.32 9.50 30.94 0.29 -15.03 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 19 Si 0.92 22.03 29.55 -169.99 -5.02 17.01 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.50 8.07 -51.93 -0.42 0.08 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.36 5.37 5.42 -39.29 -0.21 5.15 16 32 H 0.07 0.98 7.44 -51.93 -0.39 0.60 16 33 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -33.97 331.12 -8.67 -42.63 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.00 Total: 2.70 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.47 Total: -17.68 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.14 Total: -43.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.30 Total: -5.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.97 -8.67 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309580345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.226 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds