Wall clock time and date at job start Mon Mar 30 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 N 1.46505 * 109.47089 * 184.99747 * 4 2 1 6 6 C 1.34949 * 126.03240 * 125.00122 * 5 4 2 7 7 C 1.35314 * 107.74406 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.92088 * 0.02562 * 7 6 5 9 9 N 1.30843 * 108.19976 * 359.74040 * 8 7 6 10 10 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 11 11 C 1.46905 * 110.99870 * 84.99904 * 10 2 1 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 2 13 13 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 14 14 S 1.80994 * 109.47261 * 179.97438 * 13 12 11 15 15 C 1.76203 * 99.99877 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.38800 * 120.00082 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99855 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47221 * 59.99794 * 19 17 15 21 21 H 1.48500 * 109.47254 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47310 * 300.00015 * 19 17 15 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 1.08004 * 126.12581 * 0.02562 * 6 5 4 29 29 H 1.07998 * 126.04258 * 179.97438 * 7 6 5 30 30 H 1.08004 * 125.90051 * 179.97438 * 8 7 6 31 31 H 1.00901 * 111.00067 * 208.95080 * 10 2 1 32 32 H 1.09001 * 109.46798 * 300.00327 * 11 10 2 33 33 H 1.08998 * 109.46961 * 60.00043 * 11 10 2 34 34 H 1.09001 * 109.47393 * 299.99719 * 12 11 10 35 35 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 36 36 H 1.09001 * 109.46514 * 300.00105 * 13 12 11 37 37 H 1.08998 * 109.46924 * 59.99625 * 13 12 11 38 38 H 0.97005 * 120.00003 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.6179 1.3109 6 6 4.2186 -0.1322 2.3448 7 6 5.5273 -0.2093 2.0098 8 6 5.6115 -0.7604 0.7270 9 7 4.3970 -1.0105 0.3092 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2227 -2.3469 12 6 2.5950 -0.5330 -3.5745 13 6 2.6610 0.4203 -4.7694 14 16 3.2681 -0.4736 -6.2215 15 6 3.2451 0.8252 -7.4120 16 1 2.9169 1.8137 -7.1264 17 6 3.6477 0.5777 -8.7170 18 7 4.0472 -0.6272 -9.0652 19 14 3.6226 1.9544 -9.9793 20 1 4.5149 3.0535 -9.5309 21 1 4.0951 1.4350 -11.2878 22 1 2.2371 2.4692 -10.1228 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 3.8203 0.2488 3.2736 29 1 6.3598 0.1007 2.6240 30 1 6.5218 -0.9505 0.1779 31 1 2.9173 -1.1204 -1.0288 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 3.5903 -0.9270 -3.3692 35 1 1.9183 -1.3563 -3.8030 36 1 1.6658 0.8146 -4.9749 37 1 3.3379 1.2434 -4.5406 38 1 4.3282 -0.8004 -9.9773 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309580345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:27 Heat of formation + Delta-G solvation = 43.336399 kcal Electronic energy + Delta-G solvation = -17699.181337 eV Core-core repulsion = 14896.257913 eV Total energy + Delta-G solvation = -2802.923423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07711 -38.57705 -35.52893 -34.61905 -33.09246 -30.93279 -30.82167 -27.86667 -27.31627 -25.93061 -22.65067 -22.17702 -21.90220 -21.24101 -19.56334 -18.15824 -17.32200 -16.91166 -16.74963 -16.26453 -15.82218 -15.52513 -15.07741 -14.87619 -14.55636 -14.24653 -13.77983 -13.65969 -13.56447 -13.30269 -13.04973 -12.93763 -12.86128 -12.77218 -12.41633 -12.31338 -12.21231 -11.78851 -11.46873 -11.36196 -11.15021 -10.37935 -10.35304 -9.50920 -9.40005 -8.69612 -8.38453 -6.15945 0.99613 1.29622 1.40103 1.46690 1.63918 1.71183 1.95903 2.26841 2.95317 3.10710 3.32391 3.51411 3.91696 3.97350 4.01930 4.12721 4.21507 4.26937 4.34842 4.42046 4.45499 4.63154 4.70358 4.72290 4.74787 4.90355 4.93691 5.00936 5.13379 5.16195 5.24736 5.37199 5.37880 5.70841 6.05266 6.16268 6.18305 6.54083 6.82227 7.02813 8.71020 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.003262 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.463267 B = 8581.844915 C = 9160.097095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 H 0.035 0.965 4 C 0.126 3.874 5 N -0.383 5.383 6 C 0.059 3.941 7 C -0.288 4.288 8 C 0.033 3.967 9 N -0.345 5.345 10 N -0.699 5.699 11 C 0.082 3.918 12 C -0.081 4.081 13 C -0.085 4.085 14 S -0.196 6.196 15 C -0.542 4.542 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.908 5.908 19 Si 0.997 3.003 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.264 1.264 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.214 0.786 29 H 0.167 0.833 30 H 0.192 0.808 31 H 0.358 0.642 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 3.068 26.673 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 H 0.053 0.947 4 C 0.006 3.994 5 N -0.166 5.166 6 C -0.087 4.087 7 C -0.317 4.317 8 C -0.152 4.152 9 N -0.168 5.168 10 N -0.338 5.338 11 C -0.049 4.049 12 C -0.120 4.120 13 C -0.235 4.235 14 S 0.032 5.968 15 C -0.689 4.689 16 H 0.091 0.909 17 C -0.190 4.190 18 N -0.544 5.544 19 Si 0.818 3.182 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.188 1.188 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.111 0.889 28 H 0.230 0.770 29 H 0.184 0.816 30 H 0.209 0.791 31 H 0.184 0.816 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.738 1.124 25.299 25.763 hybrid contribution 1.213 2.575 -0.180 2.852 sum -3.525 3.698 25.119 25.633 Atomic orbital electron populations 1.21746 0.91853 1.03085 1.02603 1.21882 0.97477 0.95471 0.89148 0.94669 1.22293 0.73220 1.03513 1.00405 1.49055 1.07075 1.48001 1.12433 1.23272 0.92235 0.98485 0.94737 1.21868 0.97618 1.13828 0.98399 1.24328 0.95930 0.98353 0.96544 1.76861 1.00774 1.24922 1.14244 1.60793 1.36168 1.32585 1.04214 1.21739 0.99935 0.93187 0.90034 1.21078 1.01237 0.97557 0.92094 1.23124 1.02292 1.00959 0.97110 1.84668 1.86373 1.20950 1.04772 1.23018 1.51745 0.97016 0.97166 0.90948 1.26111 0.93660 0.99321 0.99916 1.70158 1.41960 1.22374 1.19897 0.85035 0.79234 0.77466 0.76474 1.18900 1.19772 1.18820 0.89559 0.93212 0.91544 0.83764 0.88917 0.76983 0.81558 0.79084 0.81633 0.90737 0.96552 0.92807 0.91448 0.91695 0.92446 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.41 71.98 0.68 -1.35 16 2 C 0.07 1.37 2.86 44.91 0.13 1.49 16 3 H 0.04 0.76 7.80 -2.39 -0.02 0.74 16 4 C 0.13 1.79 6.08 86.38 0.53 2.32 16 5 N -0.38 -7.35 3.68 -348.05 -1.28 -8.63 16 6 C 0.06 0.83 11.45 83.54 0.96 1.79 16 7 C -0.29 -4.78 10.80 21.99 0.24 -4.54 16 8 C 0.03 0.73 12.03 85.24 1.03 1.75 16 9 N -0.35 -8.95 9.83 -57.02 -0.56 -9.51 16 10 N -0.70 -18.98 6.31 -491.58 -3.10 -22.09 16 11 C 0.08 2.51 5.48 86.30 0.47 2.98 16 12 C -0.08 -3.00 5.48 30.59 0.17 -2.83 16 13 C -0.09 -3.75 5.67 71.98 0.41 -3.34 16 14 S -0.20 -11.07 21.44 -56.49 -1.21 -12.28 16 15 C -0.54 -32.56 9.50 67.95 0.65 -31.92 16 16 H 0.07 4.18 7.80 -2.91 -0.02 4.16 16 17 C 0.01 0.87 5.49 84.86 0.47 1.34 16 18 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 19 Si 1.00 45.00 29.55 68.60 2.03 47.03 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 24 H 0.05 0.90 7.45 -2.39 -0.02 0.88 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.14 0.78 8.07 -2.39 -0.02 0.76 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 29 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.36 10.66 5.42 -89.69 -0.49 10.18 16 32 H 0.07 2.15 7.44 -2.39 -0.02 2.13 16 33 H 0.02 0.52 8.05 -2.39 -0.02 0.50 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 38 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -75.25 331.12 2.41 -72.83 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.54 Total: 21.03 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 5.71 Total: -32.31 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.66 Total: -96.30 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.21 Total: -12.28 kcal Total: -75.25 2.41 -72.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309580345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.170 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds